Wall clock time and date at job start Sat Apr 11 2020 06:56:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 C 1.40342 * 119.85155 * 2 1
4 4 C 1.35455 * 119.46208 * 180.02562 * 3 2 1
5 5 C 1.50704 * 120.42251 * 179.97438 * 4 3 2
6 6 N 1.36660 * 119.14438 * 359.97438 * 4 3 2
7 7 N 1.39959 * 132.34256 * 180.02562 * 6 4 3
8 8 C 1.32373 * 108.72859 * 179.71825 * 7 6 4
9 9 C 1.47882 * 125.68876 * 180.28225 * 8 7 6
10 10 O 1.21553 * 119.99611 * 173.53220 * 9 8 7
11 11 N 1.34771 * 120.00333 * 353.52512 * 9 8 7
12 12 C 1.47084 * 120.88134 * 183.62041 * 11 9 8
13 13 C 1.53692 * 108.27773 * 128.75484 * 12 11 9
14 14 N 1.46898 * 109.25911 * 54.07969 * 13 12 11
15 15 C 1.46898 * 111.00061 * 172.60722 * 14 13 12
16 16 C 1.50698 * 109.47281 * 294.29992 * 15 14 13
17 17 H 1.08003 * 120.00037 * 0.02562 * 16 15 14
18 18 C 1.37877 * 120.00183 * 179.97438 * 16 15 14
19 19 N 1.31511 * 120.00278 * 0.02562 * 18 16 15
20 20 Si 1.86806 * 120.00079 * 180.02562 * 18 16 15
21 21 H 1.48503 * 109.47117 * 0.02562 * 20 18 16
22 22 H 1.48504 * 109.46823 * 119.99993 * 20 18 16
23 23 H 1.48495 * 109.47184 * 240.00157 * 20 18 16
24 24 C 1.46896 * 111.27088 * 296.75720 * 14 13 12
25 25 C 1.47080 * 120.88321 * 3.89163 * 11 9 8
26 26 C 1.39894 * 108.61189 * 0.40515 * 8 7 6
27 27 C 1.37256 * 119.75718 * 0.02562 * 6 4 3
28 28 N 1.31128 * 119.85035 * 180.02562 * 2 1 3
29 29 H 1.08995 * 109.47098 * 89.99798 * 1 2 3
30 30 H 1.09007 * 109.47075 * 210.00134 * 1 2 3
31 31 H 1.08997 * 109.46893 * 329.99793 * 1 2 3
32 32 H 1.08002 * 120.26404 * 359.97438 * 3 2 1
33 33 H 1.08990 * 109.47202 * 270.01605 * 5 4 3
34 34 H 1.08999 * 109.47603 * 30.02592 * 5 4 3
35 35 H 1.09010 * 109.46580 * 150.01960 * 5 4 3
36 36 H 1.09005 * 109.62570 * 248.52091 * 12 11 9
37 37 H 1.08997 * 109.62893 * 9.09915 * 12 11 9
38 38 H 1.09003 * 109.64910 * 294.07815 * 13 12 11
39 39 H 1.09006 * 109.42171 * 173.94350 * 13 12 11
40 40 H 1.08997 * 109.46884 * 54.30221 * 15 14 13
41 41 H 1.08998 * 109.47066 * 174.30576 * 15 14 13
42 42 H 0.97002 * 120.00569 * 179.97438 * 19 18 16
43 43 H 1.09006 * 109.49220 * 303.14682 * 24 14 13
44 44 H 1.08994 * 109.49533 * 183.06204 * 24 14 13
45 45 H 1.09003 * 109.62547 * 350.90230 * 25 11 9
46 46 H 1.09007 * 109.62744 * 111.47489 * 25 11 9
47 47 H 1.08009 * 126.19907 * 179.85368 * 26 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.2056 1.2172 0.0000
4 6 3.5601 1.2080 -0.0005
5 6 4.3321 2.5023 -0.0011
6 7 4.2176 0.0099 -0.0005
7 7 5.5780 -0.3189 -0.0005
8 6 5.6966 -1.6373 0.0057
9 6 6.9702 -2.3889 0.0137
10 8 6.9614 -3.5980 0.1375
11 7 8.1404 -1.7332 -0.1164
12 6 9.4129 -2.4673 -0.1903
13 6 10.1852 -1.9702 -1.4225
14 7 10.3151 -0.5085 -1.3558
15 6 11.1954 -0.0090 -2.4204
16 6 12.5973 -0.5117 -2.1901
17 1 12.8127 -1.1397 -1.3383
18 6 13.6048 -0.1706 -3.0674
19 7 13.3426 0.5937 -4.1050
20 14 15.3425 -0.7943 -2.7823
21 1 15.3734 -1.6299 -1.5550
22 1 15.7730 -1.6095 -3.9465
23 1 16.2622 0.3601 -2.6190
24 6 9.0011 0.1462 -1.4089
25 6 8.1797 -0.2644 -0.1822
26 6 4.4162 -2.2008 0.0005
27 6 3.5007 -1.1605 -0.0005
28 7 2.1597 -1.1373 -0.0005
29 1 -0.3633 0.0000 -1.0276
30 1 -0.3633 -0.8900 0.5139
31 1 -0.3633 0.8900 0.5139
32 1 1.6675 2.1536 -0.0004
33 1 4.5175 2.8143 -1.0288
34 1 3.7543 3.2703 0.5131
35 1 5.2830 2.3584 0.5121
36 1 9.9963 -2.2803 0.7113
37 1 9.2147 -3.5347 -0.2867
38 1 9.6464 -2.2465 -2.3289
39 1 11.1766 -2.4231 -1.4359
40 1 10.8359 -0.3648 -3.3859
41 1 11.1943 1.0809 -2.4114
42 1 14.0515 0.8340 -4.7220
43 1 8.4787 -0.1596 -2.3154
44 1 9.1336 1.2280 -1.4123
45 1 7.1657 0.1252 -0.2733
46 1 8.6468 0.1302 0.7202
47 1 4.1834 -3.2555 0.0013
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001150588173.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:56:02
Heat of formation + Delta-G solvation = 82.646419 kcal
Electronic energy + Delta-G solvation = -29680.170205 eV
Core-core repulsion = 25671.822951 eV
Total energy + Delta-G solvation = -4008.347254 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-43.55780 -41.36266 -39.43715 -38.89550 -36.13319 -36.12433 -34.47027 -33.45812
-32.14409 -31.32978 -30.20081 -29.45452 -28.61997 -27.52394 -25.92170 -24.60292
-23.86784 -23.26687 -22.57708 -21.69938 -20.33752 -19.19675 -19.10581 -18.49327
-17.51782 -17.32808 -16.85763 -16.61867 -16.47556 -16.23067 -16.01213 -15.57371
-15.43724 -15.28591 -14.96966 -14.74124 -14.46980 -14.39243 -14.21860 -14.10406
-13.88782 -13.65131 -13.30618 -13.19531 -13.01401 -12.84478 -12.75632 -12.68819
-12.60830 -12.39037 -12.25965 -11.95805 -11.90491 -11.73223 -11.48555 -11.26130
-10.76603 -10.63082 -10.52227 -9.93805 -9.13988 -9.08979 -8.21880 -6.31774
-0.61530 -0.41972 0.59327 0.72161 1.41544 1.42207 1.55783 1.68298
2.00040 2.27196 2.39773 2.66642 2.67577 3.10319 3.21205 3.22042
3.43389 3.80749 3.89003 3.96765 4.09987 4.13021 4.17229 4.23470
4.29699 4.36755 4.40635 4.48366 4.56877 4.59335 4.76639 4.77343
4.81678 4.86562 4.88192 4.89929 4.95475 5.06148 5.10738 5.17537
5.19049 5.30140 5.33435 5.48166 5.63028 5.96981 6.00483 6.16653
6.25175 6.53186 6.55961 6.78103 6.83731 7.37984 8.89580
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.021240 B = 0.002332 C = 0.002159
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1317.964257 B =12003.038075 C =12964.443078
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 C 0.210 3.790
3 C -0.201 4.201
4 C 0.170 3.830
5 C -0.120 4.120
6 N -0.311 5.311
7 N -0.290 5.290
8 C 0.069 3.931
9 C 0.594 3.406
10 O -0.555 6.555
11 N -0.592 5.592
12 C 0.125 3.875
13 C 0.056 3.944
14 N -0.538 5.538
15 C 0.209 3.791
16 C -0.522 4.522
17 H 0.067 0.933
18 C 0.001 3.999
19 N -0.935 5.935
20 Si 0.970 3.030
21 H -0.262 1.262
22 H -0.281 1.281
23 H -0.278 1.278
24 C 0.045 3.955
25 C 0.096 3.904
26 C -0.235 4.235
27 C 0.262 3.738
28 N -0.502 5.502
29 H 0.106 0.894
30 H 0.080 0.920
31 H 0.122 0.878
32 H 0.220 0.780
33 H 0.103 0.897
34 H 0.134 0.866
35 H 0.075 0.925
36 H 0.090 0.910
37 H 0.095 0.905
38 H 0.011 0.989
39 H 0.088 0.912
40 H -0.042 1.042
41 H 0.011 0.989
42 H 0.264 0.736
43 H 0.012 0.988
44 H 0.090 0.910
45 H 0.143 0.857
46 H 0.085 0.915
47 H 0.166 0.834
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.686 6.451 10.477 31.214
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.048 3.952
3 C -0.224 4.224
4 C 0.057 3.943
5 C -0.176 4.176
6 N -0.084 5.084
7 N -0.120 5.120
8 C -0.088 4.088
9 C 0.379 3.621
10 O -0.432 6.432
11 N -0.323 5.323
12 C 0.003 3.997
13 C -0.073 4.073
14 N -0.263 5.263
15 C 0.083 3.917
16 C -0.560 4.560
17 H 0.085 0.915
18 C -0.197 4.197
19 N -0.575 5.575
20 Si 0.795 3.205
21 H -0.185 1.185
22 H -0.207 1.207
23 H -0.204 1.204
24 C -0.084 4.084
25 C -0.027 4.027
26 C -0.267 4.267
27 C 0.033 3.967
28 N -0.218 5.218
29 H 0.124 0.876
30 H 0.098 0.902
31 H 0.140 0.860
32 H 0.237 0.763
33 H 0.121 0.879
34 H 0.152 0.848
35 H 0.094 0.906
36 H 0.109 0.891
37 H 0.114 0.886
38 H 0.029 0.971
39 H 0.106 0.894
40 H -0.024 1.024
41 H 0.029 0.971
42 H 0.073 0.927
43 H 0.031 0.969
44 H 0.108 0.892
45 H 0.160 0.840
46 H 0.103 0.897
47 H 0.183 0.817
Dipole moment (debyes) X Y Z Total
from point charges -27.908 6.135 10.850 30.565
hybrid contribution 1.028 -0.703 -1.300 1.800
sum -26.880 5.432 9.551 29.039
Atomic orbital electron populations
1.21041 0.83726 1.06030 1.05447 1.22840 0.99836 0.87066 0.85447
1.22187 0.90631 1.02631 1.06991 1.21693 0.93148 0.86180 0.93263
1.21190 1.00761 0.89947 1.05736 1.47677 1.06640 1.07180 1.46871
1.77575 0.90160 1.12630 1.31671 1.21816 0.94691 0.91475 1.00860
1.17230 0.81961 0.85916 0.76961 1.90760 1.86710 1.13967 1.51775
1.48179 1.05736 1.08867 1.69556 1.21936 0.82227 0.96822 0.98692
1.22381 1.00308 0.89210 0.95421 1.62046 1.10916 1.04712 1.48606
1.19385 0.91595 0.94421 0.86327 1.21487 0.93508 1.31030 1.09986
0.91471 1.25921 1.03745 0.95354 0.94694 1.70089 1.34538 1.37863
1.15024 0.85316 0.78698 0.78168 0.78328 1.18541 1.20694 1.20383
1.22448 0.89440 1.00130 0.96352 1.22855 1.03907 0.77674 0.98258
1.20890 0.88034 0.99647 1.18121 1.20568 0.89068 0.86494 1.00548
1.68176 1.02713 1.31035 1.19854 0.87619 0.90158 0.86002 0.76310
0.87887 0.84788 0.90627 0.89149 0.88626 0.97063 0.89371 1.02431
0.97069 0.92695 0.96930 0.89192 0.84039 0.89666 0.81667
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.34 10.19 71.24 0.73 0.38 16
2 C 0.21 2.57 6.83 43.18 0.29 2.86 16
3 C -0.20 -1.57 9.37 22.14 0.21 -1.36 16
4 C 0.17 2.40 6.86 41.16 0.28 2.69 16
5 C -0.12 -0.93 10.09 71.24 0.72 -0.21 16
6 N -0.31 -7.40 3.90 -180.78 -0.70 -8.11 16
7 N -0.29 -8.18 8.81 -48.79 -0.43 -8.61 16
8 C 0.07 2.19 6.84 42.02 0.29 2.48 16
9 C 0.59 21.03 7.71 86.80 0.67 21.70 16
10 O -0.55 -22.07 16.36 -3.88 -0.06 -22.13 16
11 N -0.59 -20.18 3.00 -820.40 -2.46 -22.64 16
12 C 0.13 4.31 6.62 86.50 0.57 4.88 16
13 C 0.06 2.27 5.47 86.54 0.47 2.75 16
14 N -0.54 -23.57 4.62 -898.91 -4.15 -27.72 16
15 C 0.21 11.18 4.72 85.56 0.40 11.58 16
16 C -0.52 -29.40 8.41 25.60 0.22 -29.18 16
17 H 0.07 3.68 7.13 -2.91 -0.02 3.66 16
18 C 0.00 0.05 5.46 84.66 0.46 0.51 16
19 N -0.93 -56.24 13.29 21.45 0.28 -55.95 16
20 Si 0.97 44.27 29.54 68.60 2.03 46.30 16
21 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16
22 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16
23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16
24 C 0.05 1.67 5.62 86.38 0.49 2.16 16
25 C 0.10 3.00 6.45 86.35 0.56 3.55 16
26 C -0.24 -7.18 10.66 22.75 0.24 -6.94 16
27 C 0.26 7.01 7.90 133.00 1.05 8.06 16
28 N -0.50 -11.09 10.40 -180.70 -1.88 -12.97 16
29 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16
30 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16
31 H 0.12 -0.43 8.09 -2.39 -0.02 -0.45 16
32 H 0.22 -0.69 8.06 -2.91 -0.02 -0.71 16
33 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16
34 H 0.13 0.00 8.09 -2.39 -0.02 -0.02 16
35 H 0.07 0.89 8.12 -2.38 -0.02 0.87 16
36 H 0.09 2.91 8.14 -2.38 -0.02 2.89 16
37 H 0.10 3.22 7.08 -2.39 -0.02 3.21 16
38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16
39 H 0.09 3.76 6.67 -2.38 -0.02 3.74 16
40 H -0.04 -2.48 8.12 -2.39 -0.02 -2.50 16
41 H 0.01 0.64 7.97 -2.39 -0.02 0.62 16
42 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16
43 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16
44 H 0.09 3.12 7.99 -2.39 -0.02 3.10 16
45 H 0.14 4.12 3.77 -84.66 -0.32 3.80 16
46 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16
47 H 0.17 4.93 8.06 -2.91 -0.02 4.91 16
Total: -1.00 -79.22 384.88 0.95 -78.27
By element:
Atomic # 1 Polarization: 6.95 SS G_CDS: 0.68 Total: 7.63 kcal
Atomic # 6 Polarization: 18.28 SS G_CDS: 7.65 Total: 25.93 kcal
Atomic # 7 Polarization: -126.65 SS G_CDS: -9.35 Total: -135.99 kcal
Atomic # 8 Polarization: -22.07 SS G_CDS: -0.06 Total: -22.13 kcal
Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal
Total: -79.22 0.95 -78.27 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001150588173.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 160.920 kcal
(2) G-P(sol) polarization free energy of solvation -79.220 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.700 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.274 kcal
(6) G-S(sol) free energy of system = (1) + (5) 82.646 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds