Wall clock time and date at job start Sat Apr 11 2020 06:56:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50689 * 1
3 3 C 1.39968 * 119.94739 * 2 1
4 4 C 1.35751 * 119.35768 * 180.24978 * 3 2 1
5 5 C 1.50703 * 120.42346 * 179.78574 * 4 3 2
6 6 N 1.36320 * 119.15453 * 359.51175 * 4 3 2
7 7 N 1.39912 * 132.15892 * 180.25214 * 6 4 3
8 8 C 1.30700 * 109.51287 * 179.97438 * 7 6 4
9 9 C 1.40641 * 108.73085 * 0.02562 * 8 7 6
10 10 C 1.46583 * 126.53680 * 180.02562 * 9 8 7
11 11 O 1.21711 * 119.99626 * 179.97438 * 10 9 8
12 12 N 1.34770 * 120.00146 * 359.97438 * 10 9 8
13 13 C 1.46507 * 120.00108 * 180.02562 * 12 10 9
14 14 C 1.52997 * 109.47299 * 179.97438 * 13 12 10
15 15 H 1.09000 * 109.46870 * 64.99556 * 14 13 12
16 16 N 1.46502 * 109.47116 * 305.00228 * 14 13 12
17 17 C 1.36936 * 119.99880 * 155.00119 * 16 14 13
18 18 H 1.07997 * 120.00106 * 359.97438 * 17 16 14
19 19 C 1.38817 * 119.99964 * 179.97438 * 17 16 14
20 20 N 1.31620 * 119.99559 * 359.97438 * 19 17 16
21 21 Si 1.86795 * 120.00262 * 179.97438 * 19 17 16
22 22 H 1.48502 * 109.46900 * 89.99900 * 21 19 17
23 23 H 1.48499 * 109.47457 * 210.00238 * 21 19 17
24 24 H 1.48505 * 109.47140 * 330.00222 * 21 19 17
25 25 C 1.52992 * 109.47336 * 184.99666 * 14 13 12
26 26 C 1.52998 * 117.50239 * 248.75111 * 25 14 13
27 27 C 1.53001 * 117.50028 * 180.08612 * 25 14 13
28 28 C 1.36596 * 119.72985 * 0.24967 * 6 4 3
29 29 N 1.31499 * 119.95233 * 179.75562 * 2 1 3
30 30 H 1.09005 * 109.46990 * 270.24416 * 1 2 3
31 31 H 1.09001 * 109.47873 * 30.24196 * 1 2 3
32 32 H 1.08998 * 109.47170 * 150.24518 * 1 2 3
33 33 H 1.07997 * 120.32289 * 0.03367 * 3 2 1
34 34 H 1.09002 * 109.47152 * 269.72159 * 5 4 3
35 35 H 1.09001 * 109.46980 * 149.72260 * 5 4 3
36 36 H 1.09004 * 109.47113 * 29.72240 * 5 4 3
37 37 H 1.07998 * 125.63085 * 180.02562 * 8 7 6
38 38 H 0.96994 * 120.00322 * 0.02562 * 12 10 9
39 39 H 1.09001 * 109.46914 * 299.99811 * 13 12 10
40 40 H 1.09002 * 109.47059 * 59.99593 * 13 12 10
41 41 H 0.97004 * 119.99896 * 334.99725 * 16 14 13
42 42 H 0.97002 * 119.99748 * 179.97438 * 20 19 17
43 43 H 1.09004 * 115.54873 * 34.41919 * 25 14 13
44 44 H 1.09002 * 117.49840 * 359.97438 * 26 25 14
45 45 H 1.08997 * 117.49978 * 145.01956 * 26 25 14
46 46 H 1.08999 * 117.49984 * 214.98312 * 27 25 14
47 47 H 1.08998 * 117.50145 * 359.97438 * 27 25 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2056 1.2128 0.0000
4 6 3.5630 1.1988 -0.0052
5 6 4.3395 2.4904 -0.0101
6 7 4.2149 0.0016 -0.0001
7 7 5.5748 -0.3272 0.0013
8 6 5.7096 -1.6272 0.0074
9 6 4.4314 -2.2138 0.0097
10 6 4.1295 -3.6482 0.0167
11 8 2.9727 -4.0266 0.0185
12 7 5.1328 -4.5480 0.0213
13 6 4.8310 -5.9817 0.0278
14 6 6.1375 -6.7779 0.0313
15 1 6.6738 -6.5918 0.9618
16 7 6.9668 -6.3605 -1.1021
17 6 8.3264 -6.5152 -1.0492
18 1 8.7873 -6.9444 -0.1720
19 6 9.1121 -6.1203 -2.1233
20 7 8.5501 -5.5977 -3.1927
21 14 10.9668 -6.3305 -2.0511
22 1 11.3352 -7.6637 -2.5916
23 1 11.6172 -5.2704 -2.8624
24 1 11.4224 -6.2246 -0.6416
25 6 5.8253 -8.2708 -0.0876
26 6 6.1048 -9.1505 1.1327
27 6 7.0081 -9.2412 -0.0998
28 6 3.4970 -1.1605 0.0049
29 7 2.1634 -1.1394 0.0049
30 1 -0.3633 0.0044 1.0277
31 1 -0.3635 0.8878 -0.5176
32 1 -0.3633 -0.8922 -0.5100
33 1 1.6701 2.1506 0.0005
34 1 4.5271 2.7977 -1.0390
35 1 5.2893 2.3454 0.5046
36 1 3.7637 3.2625 0.5004
37 1 6.6476 -2.1625 0.0102
38 1 6.0547 -4.2465 0.0202
39 1 4.2531 -6.2272 0.9187
40 1 4.2537 -6.2355 -0.8613
41 1 6.5527 -5.9748 -1.8899
42 1 9.0992 -5.3214 -3.9431
43 1 4.9611 -8.5229 -0.7023
44 1 6.5115 -8.6655 2.0201
45 1 5.4248 -9.9814 1.3205
46 1 6.9221 -10.1318 -0.7223
47 1 8.0088 -8.8160 -0.0236
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001265366210.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:56:57
Heat of formation + Delta-G solvation = 114.096044 kcal
Electronic energy + Delta-G solvation = -29390.942150 eV
Core-core repulsion = 25383.958654 eV
Total energy + Delta-G solvation = -4006.983496 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-42.57759 -39.14503 -38.28381 -37.35639 -35.25015 -34.46991 -33.29300 -32.42328
-31.08304 -30.32104 -28.85254 -28.06727 -27.69197 -24.31804 -23.37523 -22.88237
-22.06054 -21.69552 -21.52997 -19.89015 -19.29560 -18.52910 -17.34728 -17.29898
-16.50005 -16.47421 -15.44187 -15.09407 -15.02410 -14.65632 -14.32425 -14.21529
-14.06112 -13.85718 -13.68935 -13.64315 -13.33980 -13.28001 -13.08518 -12.76887
-12.70919 -12.48643 -12.00074 -11.96459 -11.56012 -11.30576 -11.11365 -10.92672
-10.84172 -10.81747 -10.64686 -10.09901 -9.91768 -9.89048 -9.63416 -9.57497
-9.34955 -9.22827 -8.94637 -8.47205 -7.94376 -7.00786 -5.78306 -3.07585
0.23748 0.62312 1.78552 2.19349 3.02707 3.41297 3.47005 3.48768
3.55233 3.59876 3.83476 3.91257 4.07996 4.46112 4.50300 4.62794
4.78022 4.82332 4.89682 4.96119 5.05242 5.15954 5.22341 5.26785
5.30871 5.42455 5.50204 5.57273 5.60624 5.65123 5.70484 5.85188
5.90008 5.98467 6.10196 6.13878 6.17257 6.25148 6.35225 6.51137
6.59846 6.68237 6.83886 7.02408 7.10342 7.23481 7.54416 7.68092
8.17643 8.38530 8.85573 9.50718 10.06026 10.42445 11.43352
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.012303 B = 0.002879 C = 0.002430
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2275.402269 B = 9724.101166 C =11519.330671
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C 0.207 3.793
3 C -0.231 4.231
4 C 0.199 3.801
5 C -0.119 4.119
6 N -0.311 5.311
7 N -0.313 5.313
8 C 0.136 3.864
9 C -0.282 4.282
10 C 0.593 3.407
11 O -0.544 6.544
12 N -0.712 5.712
13 C 0.124 3.876
14 C 0.193 3.807
15 H 0.055 0.945
16 N -0.717 5.717
17 C -0.236 4.236
18 H 0.070 0.930
19 C -0.010 4.010
20 N -0.928 5.928
21 Si 0.901 3.099
22 H -0.291 1.291
23 H -0.293 1.293
24 H -0.282 1.282
25 C -0.158 4.158
26 C -0.196 4.196
27 C -0.157 4.157
28 C 0.324 3.676
29 N -0.447 5.447
30 H 0.090 0.910
31 H 0.084 0.916
32 H 0.088 0.912
33 H 0.167 0.833
34 H 0.094 0.906
35 H 0.090 0.910
36 H 0.094 0.906
37 H 0.209 0.791
38 H 0.406 0.594
39 H 0.064 0.936
40 H 0.063 0.937
41 H 0.386 0.614
42 H 0.255 0.745
43 H 0.090 0.910
44 H 0.086 0.914
45 H 0.080 0.920
46 H 0.079 0.921
47 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.061 15.313 8.540 21.863
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.045 3.955
3 C -0.255 4.255
4 C 0.082 3.918
5 C -0.176 4.176
6 N -0.081 5.081
7 N -0.134 5.134
8 C -0.045 4.045
9 C -0.298 4.298
10 C 0.379 3.621
11 O -0.423 6.423
12 N -0.364 5.364
13 C -0.001 4.001
14 C 0.082 3.918
15 H 0.073 0.927
16 N -0.358 5.358
17 C -0.367 4.367
18 H 0.088 0.912
19 C -0.206 4.206
20 N -0.576 5.576
21 Si 0.733 3.267
22 H -0.218 1.218
23 H -0.219 1.219
24 H -0.208 1.208
25 C -0.180 4.180
26 C -0.234 4.234
27 C -0.194 4.194
28 C 0.092 3.908
29 N -0.159 5.159
30 H 0.109 0.891
31 H 0.103 0.897
32 H 0.107 0.893
33 H 0.184 0.816
34 H 0.113 0.887
35 H 0.109 0.891
36 H 0.113 0.887
37 H 0.226 0.774
38 H 0.242 0.758
39 H 0.083 0.917
40 H 0.081 0.919
41 H 0.220 0.780
42 H 0.065 0.935
43 H 0.109 0.891
44 H 0.104 0.896
45 H 0.099 0.901
46 H 0.097 0.903
47 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -13.231 15.183 8.567 21.885
hybrid contribution 1.507 -0.045 -0.508 1.591
sum -11.724 15.138 8.060 20.774
Atomic orbital electron populations
1.20823 0.86862 1.04595 1.04101 1.22065 0.98133 0.87325 0.88005
1.21533 0.91543 1.01292 1.11117 1.20792 0.91990 0.86387 0.92662
1.21008 1.01036 0.90685 1.04829 1.47041 1.07877 1.05844 1.47352
1.77560 0.88534 1.15989 1.31360 1.24315 0.98681 0.90489 0.91050
1.19511 0.90401 0.93451 1.26486 1.16718 0.85163 0.83614 0.76562
1.90792 1.19831 1.80629 1.51006 1.45668 1.09545 1.06210 1.74980
1.21535 0.97734 0.79286 1.01507 1.20061 0.89767 0.89014 0.92924
0.92717 1.42466 1.03318 1.73469 1.16506 1.19157 0.82679 1.34355
1.00469 0.91165 1.24710 0.97616 1.01756 0.96521 1.69667 1.34164
1.47480 1.06271 0.86285 0.86020 0.77270 0.77164 1.21830 1.21904
1.20798 1.23031 0.99753 0.95251 0.99932 1.22959 1.04626 1.02900
0.92940 1.22778 0.97075 1.00375 0.99160 1.20343 0.87781 0.86083
0.96583 1.68148 1.03740 1.28108 1.15945 0.89137 0.89705 0.89268
0.81573 0.88721 0.89098 0.88714 0.77434 0.75797 0.91745 0.91898
0.77989 0.93538 0.89131 0.89556 0.90131 0.90285 0.87744
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.70 10.19 36.00 0.37 -0.33 16
2 C 0.21 2.20 6.83 -82.09 -0.56 1.64 16
3 C -0.23 -1.85 9.38 -39.82 -0.37 -2.23 16
4 C 0.20 2.00 6.85 -81.49 -0.56 1.44 16
5 C -0.12 -0.73 10.09 36.01 0.36 -0.37 16
6 N -0.31 -4.45 3.86 -8.26 -0.03 -4.48 16
7 N -0.31 -4.72 12.39 30.76 0.38 -4.34 16
8 C 0.14 2.08 11.44 -17.13 -0.20 1.89 16
9 C -0.28 -4.97 6.17 -104.66 -0.65 -5.61 16
10 C 0.59 11.50 7.78 -12.90 -0.10 11.40 16
11 O -0.54 -12.13 16.74 5.18 0.09 -12.05 16
12 N -0.71 -12.82 5.38 -61.64 -0.33 -13.15 16
13 C 0.12 2.23 5.22 -4.04 -0.02 2.21 16
14 C 0.19 3.65 2.70 -67.93 -0.18 3.46 16
15 H 0.05 1.04 7.84 -51.93 -0.41 0.63 16
16 N -0.72 -16.47 4.54 -53.43 -0.24 -16.72 16
17 C -0.24 -5.97 8.63 -15.06 -0.13 -6.10 16
18 H 0.07 1.74 6.91 -52.49 -0.36 1.38 16
19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16
20 N -0.93 -26.81 13.06 55.49 0.72 -26.08 16
21 Si 0.90 21.53 29.55 -169.99 -5.02 16.51 16
22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
24 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16
25 C -0.16 -2.81 5.36 -90.62 -0.49 -3.30 16
26 C -0.20 -3.05 10.18 -26.69 -0.27 -3.32 16
27 C -0.16 -2.82 9.78 -26.69 -0.26 -3.08 16
28 C 0.32 5.44 7.74 -155.84 -1.21 4.23 16
29 N -0.45 -7.05 10.18 -8.25 -0.08 -7.13 16
30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16
31 H 0.08 0.30 8.09 -51.93 -0.42 -0.12 16
32 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16
33 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16
34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16
35 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16
36 H 0.09 0.29 8.09 -51.93 -0.42 -0.13 16
37 H 0.21 2.70 7.46 -52.49 -0.39 2.31 16
38 H 0.41 7.09 7.06 -40.82 -0.29 6.81 16
39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
40 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16
41 H 0.39 9.80 7.80 -40.82 -0.32 9.48 16
42 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16
43 H 0.09 1.59 8.11 -51.93 -0.42 1.17 16
44 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16
45 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16
46 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16
47 H 0.10 2.09 6.23 -51.93 -0.32 1.76 16
LS Contribution 397.95 15.07 6.00 6.00
Total: -1.00 -34.84 397.95 -9.59 -44.43
By element:
Atomic # 1 Polarization: 22.14 SS G_CDS: -6.71 Total: 15.43 kcal
Atomic # 6 Polarization: 5.94 SS G_CDS: -4.36 Total: 1.58 kcal
Atomic # 7 Polarization: -72.32 SS G_CDS: 0.42 Total: -71.90 kcal
Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.05 kcal
Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal
Total LS contribution 6.00 Total: 6.00 kcal
Total: -34.84 -9.59 -44.43 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001265366210.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 158.524 kcal
(2) G-P(sol) polarization free energy of solvation -34.837 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.687 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.428 kcal
(6) G-S(sol) free energy of system = (1) + (5) 114.096 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds