Wall clock time and date at job start Sat Apr 11 2020 06:56:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50689 * 1
3 3 C 1.39968 * 119.94739 * 2 1
4 4 C 1.35751 * 119.35768 * 180.24978 * 3 2 1
5 5 C 1.50703 * 120.42346 * 179.78574 * 4 3 2
6 6 N 1.36320 * 119.15453 * 359.51175 * 4 3 2
7 7 N 1.39912 * 132.15892 * 180.25214 * 6 4 3
8 8 C 1.30700 * 109.51287 * 179.97438 * 7 6 4
9 9 C 1.40641 * 108.73085 * 0.02562 * 8 7 6
10 10 C 1.46583 * 126.53680 * 180.02562 * 9 8 7
11 11 O 1.21711 * 119.99626 * 179.97438 * 10 9 8
12 12 N 1.34770 * 120.00146 * 359.97438 * 10 9 8
13 13 C 1.46507 * 120.00108 * 180.02562 * 12 10 9
14 14 C 1.52997 * 109.47299 * 179.97438 * 13 12 10
15 15 H 1.09000 * 109.46870 * 64.99556 * 14 13 12
16 16 N 1.46502 * 109.47116 * 305.00228 * 14 13 12
17 17 C 1.36936 * 119.99880 * 155.00119 * 16 14 13
18 18 H 1.07997 * 120.00106 * 359.97438 * 17 16 14
19 19 C 1.38817 * 119.99964 * 179.97438 * 17 16 14
20 20 N 1.31620 * 119.99559 * 359.97438 * 19 17 16
21 21 Si 1.86795 * 120.00262 * 179.97438 * 19 17 16
22 22 H 1.48502 * 109.46900 * 89.99900 * 21 19 17
23 23 H 1.48499 * 109.47457 * 210.00238 * 21 19 17
24 24 H 1.48505 * 109.47140 * 330.00222 * 21 19 17
25 25 C 1.52992 * 109.47336 * 184.99666 * 14 13 12
26 26 C 1.52998 * 117.50239 * 248.75111 * 25 14 13
27 27 C 1.53001 * 117.50028 * 180.08612 * 25 14 13
28 28 C 1.36596 * 119.72985 * 0.24967 * 6 4 3
29 29 N 1.31499 * 119.95233 * 179.75562 * 2 1 3
30 30 H 1.09005 * 109.46990 * 270.24416 * 1 2 3
31 31 H 1.09001 * 109.47873 * 30.24196 * 1 2 3
32 32 H 1.08998 * 109.47170 * 150.24518 * 1 2 3
33 33 H 1.07997 * 120.32289 * 0.03367 * 3 2 1
34 34 H 1.09002 * 109.47152 * 269.72159 * 5 4 3
35 35 H 1.09001 * 109.46980 * 149.72260 * 5 4 3
36 36 H 1.09004 * 109.47113 * 29.72240 * 5 4 3
37 37 H 1.07998 * 125.63085 * 180.02562 * 8 7 6
38 38 H 0.96994 * 120.00322 * 0.02562 * 12 10 9
39 39 H 1.09001 * 109.46914 * 299.99811 * 13 12 10
40 40 H 1.09002 * 109.47059 * 59.99593 * 13 12 10
41 41 H 0.97004 * 119.99896 * 334.99725 * 16 14 13
42 42 H 0.97002 * 119.99748 * 179.97438 * 20 19 17
43 43 H 1.09004 * 115.54873 * 34.41919 * 25 14 13
44 44 H 1.09002 * 117.49840 * 359.97438 * 26 25 14
45 45 H 1.08997 * 117.49978 * 145.01956 * 26 25 14
46 46 H 1.08999 * 117.49984 * 214.98312 * 27 25 14
47 47 H 1.08998 * 117.50145 * 359.97438 * 27 25 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2056 1.2128 0.0000
4 6 3.5630 1.1988 -0.0052
5 6 4.3395 2.4904 -0.0101
6 7 4.2149 0.0016 -0.0001
7 7 5.5748 -0.3272 0.0013
8 6 5.7096 -1.6272 0.0074
9 6 4.4314 -2.2138 0.0097
10 6 4.1295 -3.6482 0.0167
11 8 2.9727 -4.0266 0.0185
12 7 5.1328 -4.5480 0.0213
13 6 4.8310 -5.9817 0.0278
14 6 6.1375 -6.7779 0.0313
15 1 6.6738 -6.5918 0.9618
16 7 6.9668 -6.3605 -1.1021
17 6 8.3264 -6.5152 -1.0492
18 1 8.7873 -6.9444 -0.1720
19 6 9.1121 -6.1203 -2.1233
20 7 8.5501 -5.5977 -3.1927
21 14 10.9668 -6.3305 -2.0511
22 1 11.3352 -7.6637 -2.5916
23 1 11.6172 -5.2704 -2.8624
24 1 11.4224 -6.2246 -0.6416
25 6 5.8253 -8.2708 -0.0876
26 6 6.1048 -9.1505 1.1327
27 6 7.0081 -9.2412 -0.0998
28 6 3.4970 -1.1605 0.0049
29 7 2.1634 -1.1394 0.0049
30 1 -0.3633 0.0044 1.0277
31 1 -0.3635 0.8878 -0.5176
32 1 -0.3633 -0.8922 -0.5100
33 1 1.6701 2.1506 0.0005
34 1 4.5271 2.7977 -1.0390
35 1 5.2893 2.3454 0.5046
36 1 3.7637 3.2625 0.5004
37 1 6.6476 -2.1625 0.0102
38 1 6.0547 -4.2465 0.0202
39 1 4.2531 -6.2272 0.9187
40 1 4.2537 -6.2355 -0.8613
41 1 6.5527 -5.9748 -1.8899
42 1 9.0992 -5.3214 -3.9431
43 1 4.9611 -8.5229 -0.7023
44 1 6.5115 -8.6655 2.0201
45 1 5.4248 -9.9814 1.3205
46 1 6.9221 -10.1318 -0.7223
47 1 8.0088 -8.8160 -0.0236
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001265366210.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:56:56
Heat of formation + Delta-G solvation = 90.437145 kcal
Electronic energy + Delta-G solvation = -29391.968077 eV
Core-core repulsion = 25383.958654 eV
Total energy + Delta-G solvation = -4008.009423 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-43.59153 -40.51653 -39.38535 -38.84905 -36.13675 -35.99038 -35.08501 -33.35718
-32.72469 -31.47652 -29.97218 -29.21559 -28.63349 -25.85011 -24.85665 -24.09867
-23.18207 -22.98609 -22.74306 -21.36869 -20.67186 -19.57784 -19.13854 -18.31366
-17.82680 -17.50747 -16.85383 -16.71791 -16.07436 -16.04130 -15.89474 -15.34561
-15.16528 -15.01216 -14.85264 -14.74748 -14.58118 -14.29429 -14.23219 -13.88624
-13.61561 -13.30812 -13.04978 -12.96876 -12.87368 -12.80422 -12.71217 -12.60692
-12.39545 -12.22370 -11.96110 -11.86595 -11.69587 -11.05271 -10.97421 -10.85106
-10.80506 -10.71512 -10.54466 -9.98469 -9.07652 -8.96524 -7.84882 -5.12594
-0.65859 -0.29394 0.83906 0.98377 1.50954 1.52268 1.59293 2.03533
2.32767 2.56289 2.60581 2.68532 2.92199 3.10955 3.20662 3.51870
3.71983 3.82443 3.89987 3.96180 4.03207 4.11288 4.19508 4.33966
4.37440 4.39002 4.42609 4.45605 4.56070 4.64850 4.72170 4.74068
4.81508 4.83710 4.90991 4.92607 5.00627 5.15816 5.18335 5.20862
5.28927 5.42008 5.42898 5.50479 5.61653 5.65123 6.14792 6.33940
6.60028 6.72234 7.38419 7.42326 8.13444 8.39775 9.37865
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.012303 B = 0.002879 C = 0.002430
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2275.402269 B = 9724.101166 C =11519.330671
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 C 0.207 3.793
3 C -0.208 4.208
4 C 0.178 3.822
5 C -0.114 4.114
6 N -0.315 5.315
7 N -0.325 5.325
8 C 0.139 3.861
9 C -0.330 4.330
10 C 0.592 3.408
11 O -0.584 6.584
12 N -0.708 5.708
13 C 0.133 3.867
14 C 0.199 3.801
15 H 0.060 0.940
16 N -0.723 5.723
17 C -0.215 4.215
18 H 0.078 0.922
19 C -0.070 4.070
20 N -0.967 5.967
21 Si 0.959 3.041
22 H -0.296 1.296
23 H -0.302 1.302
24 H -0.268 1.268
25 C -0.174 4.174
26 C -0.162 4.162
27 C -0.172 4.172
28 C 0.315 3.685
29 N -0.504 5.504
30 H 0.109 0.891
31 H 0.127 0.873
32 H 0.071 0.929
33 H 0.226 0.774
34 H 0.105 0.895
35 H 0.075 0.925
36 H 0.137 0.863
37 H 0.220 0.780
38 H 0.408 0.592
39 H 0.077 0.923
40 H 0.047 0.953
41 H 0.372 0.628
42 H 0.246 0.754
43 H 0.092 0.908
44 H 0.096 0.904
45 H 0.106 0.894
46 H 0.085 0.915
47 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.367 17.487 10.169 24.811
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.049 3.951
3 C -0.230 4.230
4 C 0.063 3.937
5 C -0.170 4.170
6 N -0.084 5.084
7 N -0.146 5.146
8 C -0.042 4.042
9 C -0.347 4.347
10 C 0.381 3.619
11 O -0.465 6.465
12 N -0.359 5.359
13 C 0.008 3.992
14 C 0.090 3.910
15 H 0.077 0.923
16 N -0.362 5.362
17 C -0.347 4.347
18 H 0.096 0.904
19 C -0.263 4.263
20 N -0.618 5.618
21 Si 0.790 3.210
22 H -0.224 1.224
23 H -0.230 1.230
24 H -0.193 1.193
25 C -0.196 4.196
26 C -0.199 4.199
27 C -0.210 4.210
28 C 0.081 3.919
29 N -0.220 5.220
30 H 0.127 0.873
31 H 0.145 0.855
32 H 0.090 0.910
33 H 0.243 0.757
34 H 0.124 0.876
35 H 0.094 0.906
36 H 0.155 0.845
37 H 0.236 0.764
38 H 0.244 0.756
39 H 0.095 0.905
40 H 0.065 0.935
41 H 0.204 0.796
42 H 0.055 0.945
43 H 0.110 0.890
44 H 0.115 0.885
45 H 0.124 0.876
46 H 0.104 0.896
47 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -14.547 17.376 10.254 24.873
hybrid contribution 1.671 -0.560 -0.941 1.998
sum -12.877 16.815 9.313 23.136
Atomic orbital electron populations
1.21045 0.83899 1.05793 1.05522 1.23003 1.00081 0.87177 0.84846
1.22206 0.90691 1.02468 1.07636 1.21849 0.93305 0.86356 0.92197
1.21179 1.00523 0.89491 1.05835 1.47266 1.07288 1.06742 1.47118
1.77445 0.89528 1.15606 1.32040 1.24426 0.98481 0.90683 0.90658
1.19419 0.91890 0.92746 1.30616 1.17015 0.84636 0.84609 0.75593
1.90739 1.21163 1.81411 1.53236 1.45617 1.09460 1.06115 1.74700
1.21437 0.97165 0.79297 1.01293 1.20129 0.89433 0.89989 0.91418
0.92254 1.42573 1.03058 1.73571 1.17025 1.19456 0.83673 1.31613
0.99938 0.90394 1.25356 1.01148 1.03028 0.96724 1.69824 1.35059
1.49927 1.06995 0.85343 0.81907 0.76280 0.77454 1.22365 1.22962
1.19277 1.22910 0.99979 0.94226 1.02451 1.23035 1.02880 1.02161
0.91843 1.22738 0.96029 1.00592 1.01601 1.20459 0.88568 0.86763
0.96084 1.68207 1.03442 1.31028 1.19274 0.87327 0.85464 0.91034
0.75735 0.87630 0.90617 0.84505 0.76367 0.75575 0.90519 0.93468
0.79607 0.94506 0.89007 0.88531 0.87568 0.89614 0.89942
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.07 10.19 71.23 0.73 -0.35 16
2 C 0.21 4.01 6.83 43.02 0.29 4.30 16
3 C -0.21 -2.51 9.38 22.11 0.21 -2.30 16
4 C 0.18 3.16 6.85 41.29 0.28 3.45 16
5 C -0.11 -1.03 10.09 71.24 0.72 -0.31 16
6 N -0.31 -8.99 3.86 -180.06 -0.70 -9.68 16
7 N -0.32 -10.06 12.39 -56.58 -0.70 -10.76 16
8 C 0.14 4.51 11.44 85.45 0.98 5.49 16
9 C -0.33 -12.36 6.17 -19.89 -0.12 -12.48 16
10 C 0.59 24.47 7.78 86.42 0.67 25.14 16
11 O -0.58 -27.61 16.74 -4.39 -0.07 -27.69 16
12 N -0.71 -26.82 5.38 -467.16 -2.51 -29.33 16
13 C 0.13 4.92 5.22 86.38 0.45 5.37 16
14 C 0.20 7.57 2.70 44.99 0.12 7.69 16
15 H 0.06 2.22 7.84 -2.39 -0.02 2.20 16
16 N -0.72 -33.98 4.54 -322.95 -1.47 -35.44 16
17 C -0.21 -11.00 8.63 84.03 0.73 -10.27 16
18 H 0.08 3.83 6.91 -2.91 -0.02 3.81 16
19 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16
20 N -0.97 -57.66 13.06 21.65 0.28 -57.38 16
21 Si 0.96 45.02 29.55 68.60 2.03 47.05 16
22 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16
23 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16
24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16
25 C -0.17 -6.08 5.36 -10.80 -0.06 -6.14 16
26 C -0.16 -4.61 10.18 30.62 0.31 -4.30 16
27 C -0.17 -6.03 9.78 30.62 0.30 -5.73 16
28 C 0.32 10.98 7.74 133.98 1.04 12.02 16
29 N -0.50 -16.19 10.18 -180.02 -1.83 -18.03 16
30 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16
31 H 0.13 0.23 8.09 -2.39 -0.02 0.21 16
32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16
33 H 0.23 -0.04 8.06 -2.91 -0.02 -0.06 16
34 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16
35 H 0.07 0.97 8.10 -2.39 -0.02 0.95 16
36 H 0.14 0.08 8.09 -2.38 -0.02 0.06 16
37 H 0.22 6.11 7.46 -2.91 -0.02 6.09 16
38 H 0.41 15.02 7.06 -92.71 -0.65 14.37 16
39 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16
40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16
41 H 0.37 19.63 7.80 -92.71 -0.72 18.90 16
42 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16
43 H 0.09 3.19 8.11 -2.39 -0.02 3.17 16
44 H 0.10 2.59 8.05 -2.39 -0.02 2.58 16
45 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16
46 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16
47 H 0.08 3.25 6.23 -2.39 -0.01 3.24 16
Total: -1.00 -81.38 397.95 1.78 -79.60
By element:
Atomic # 1 Polarization: 43.83 SS G_CDS: -0.36 Total: 43.47 kcal
Atomic # 6 Polarization: 11.08 SS G_CDS: 7.11 Total: 18.19 kcal
Atomic # 7 Polarization: -153.70 SS G_CDS: -6.93 Total: -160.62 kcal
Atomic # 8 Polarization: -27.61 SS G_CDS: -0.07 Total: -27.69 kcal
Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal
Total: -81.38 1.78 -79.60 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001265366210.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 170.037 kcal
(2) G-P(sol) polarization free energy of solvation -81.380 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.657 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.599 kcal
(6) G-S(sol) free energy of system = (1) + (5) 90.437 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds