Wall clock time and date at job start Sat Apr 11 2020 06:57:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.30893 * 119.96319 * 2 1
4 4 C 1.34156 * 121.16962 * 180.02562 * 3 2 1
5 5 C 1.38704 * 132.25244 * 180.02562 * 4 3 2
6 6 C 1.38848 * 107.67679 * 179.97438 * 5 4 3
7 7 N 1.31297 * 108.99012 * 359.97438 * 6 5 4
8 8 N 1.37269 * 120.89808 * 0.02562 * 4 3 2
9 9 C 1.36076 * 119.97639 * 359.74169 * 8 4 3
10 10 C 1.38067 * 118.88654 * 0.50153 * 9 8 4
11 11 C 1.47603 * 120.49778 * 179.77623 * 10 9 8
12 12 O 1.21590 * 119.99667 * 173.81117 * 11 10 9
13 13 N 1.34766 * 120.00270 * 353.80748 * 11 10 9
14 14 C 1.46510 * 120.00074 * 180.02562 * 13 11 10
15 15 H 1.08993 * 109.49643 * 34.93200 * 14 13 11
16 16 C 1.53039 * 109.49274 * 274.83919 * 14 13 11
17 17 C 1.53036 * 109.53543 * 178.68190 * 16 14 13
18 18 C 1.52770 * 109.38608 * 61.24036 * 17 16 14
19 19 N 1.46928 * 109.00497 * 305.59027 * 18 17 16
20 20 C 1.36936 * 120.62696 * 233.58220 * 19 18 17
21 21 H 1.07999 * 119.99530 * 150.48745 * 20 19 18
22 22 C 1.38811 * 120.00066 * 330.48629 * 20 19 18
23 23 N 1.31615 * 120.00050 * 339.71958 * 22 20 19
24 24 Si 1.86800 * 119.99781 * 159.72203 * 22 20 19
25 25 H 1.48502 * 109.47028 * 265.42467 * 24 22 20
26 26 H 1.48497 * 109.47137 * 25.42552 * 24 22 20
27 27 H 1.48506 * 109.46857 * 145.42609 * 24 22 20
28 28 C 1.46928 * 118.74121 * 53.30647 * 19 18 17
29 29 H 1.08996 * 109.58641 * 66.42598 * 28 19 18
30 30 C 1.52999 * 109.58714 * 186.71561 * 28 19 18
31 31 H 1.08996 * 109.47224 * 263.56148 * 1 2 3
32 32 H 1.08997 * 109.47279 * 23.56714 * 1 2 3
33 33 H 1.09007 * 109.46969 * 143.56432 * 1 2 3
34 34 H 1.07997 * 126.16215 * 359.94134 * 5 4 3
35 35 H 1.07996 * 125.50978 * 180.02562 * 6 5 4
36 36 H 1.08004 * 120.55284 * 180.27697 * 9 8 4
37 37 H 0.97003 * 120.00231 * 0.02562 * 13 11 10
38 38 H 1.09000 * 109.46028 * 298.69948 * 16 14 13
39 39 H 1.08997 * 109.46414 * 58.67822 * 16 14 13
40 40 H 1.09002 * 109.50339 * 181.31400 * 17 16 14
41 41 H 1.08997 * 109.49824 * 301.37949 * 17 16 14
42 42 H 1.08994 * 109.51418 * 185.70798 * 18 17 16
43 43 H 1.08997 * 109.42751 * 65.42270 * 18 17 16
44 44 H 0.97000 * 120.00100 * 179.97438 * 23 22 20
45 45 H 1.09001 * 109.47202 * 60.00018 * 30 28 19
46 46 H 1.08994 * 109.46906 * 180.02562 * 30 28 19
47 47 H 1.09001 * 109.46735 * 299.99926 * 30 28 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1607 1.1340 0.0000
4 6 3.5020 1.1622 -0.0005
5 6 4.4128 2.2083 -0.0002
6 6 5.6874 1.6576 -0.0005
7 7 5.5872 0.3484 -0.0004
8 7 4.2315 -0.0006 -0.0016
9 6 3.5944 -1.2029 0.0032
10 6 2.2139 -1.2263 -0.0015
11 6 1.4865 -2.5106 -0.0016
12 8 0.2756 -2.5233 0.1078
13 7 2.1643 -3.6690 -0.1229
14 6 1.4421 -4.9438 -0.1235
15 1 0.4809 -4.8170 -0.6214
16 6 1.2145 -5.4024 1.3187
17 6 0.4315 -6.7173 1.3199
18 6 1.2406 -7.7900 0.5930
19 7 1.5929 -7.2983 -0.7460
20 6 1.2928 -8.0347 -1.8608
21 1 1.0986 -7.5378 -2.7999
22 6 1.2382 -9.4196 -1.7840
23 7 1.8427 -10.0483 -0.7983
24 14 0.3067 -10.3909 -3.0795
25 1 -1.0745 -10.6549 -2.6022
26 1 0.2535 -9.6093 -4.3410
27 1 1.0006 -11.6807 -3.3251
28 6 2.2678 -5.9988 -0.8665
29 1 3.2626 -6.0614 -0.4254
30 6 2.3846 -5.6165 -2.3433
31 1 -0.3633 -0.1152 1.0211
32 1 -0.3634 0.9419 -0.4109
33 1 -0.3633 -0.8268 -0.6104
34 1 4.1737 3.2615 -0.0003
35 1 6.6119 2.2157 0.0001
36 1 4.1592 -2.1235 0.0069
37 1 3.1304 -3.6589 -0.2099
38 1 2.1768 -5.5524 1.8082
39 1 0.6480 -4.6422 1.8564
40 1 0.2494 -7.0314 2.3477
41 1 -0.5207 -6.5742 0.8092
42 1 0.6441 -8.6979 0.5036
43 1 2.1499 -8.0017 1.1555
44 1 1.8043 -11.0160 -0.7444
45 1 1.3886 -5.5494 -2.7811
46 1 2.8858 -4.6525 -2.4305
47 1 2.9629 -6.3753 -2.8704
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000994130893.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:31
Heat of formation + Delta-G solvation = 89.163752 kcal
Electronic energy + Delta-G solvation = -30215.536399 eV
Core-core repulsion = 26207.471757 eV
Total energy + Delta-G solvation = -4008.064641 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-43.47557 -41.31851 -39.65655 -38.65095 -36.15991 -35.36732 -34.25047 -33.43723
-33.09496 -31.46454 -30.23388 -29.08453 -27.85389 -26.85646 -25.88711 -24.24369
-23.47360 -22.52333 -22.30145 -21.87088 -21.10261 -19.73396 -18.95452 -18.23323
-17.52728 -17.35097 -17.18301 -16.57275 -16.37045 -16.06120 -15.68571 -15.58593
-15.29653 -15.13670 -14.97056 -14.68639 -14.50999 -14.37035 -14.27541 -13.92503
-13.35245 -13.32948 -13.12891 -12.82932 -12.81886 -12.69366 -12.53993 -12.44304
-12.41512 -12.32927 -12.00343 -11.80103 -11.75170 -11.60068 -11.25577 -11.14205
-10.75759 -10.62155 -10.51695 -10.04135 -9.07025 -8.65593 -7.86555 -5.29368
-0.82589 -0.50172 0.82705 1.35194 1.46748 1.50196 1.57100 1.79822
1.88876 2.34262 2.53409 2.67618 2.94707 3.02952 3.28779 3.49062
3.66341 3.77552 3.92046 4.03635 4.10111 4.12345 4.23732 4.32505
4.39072 4.52515 4.63284 4.63628 4.72483 4.77019 4.79565 4.89549
4.91775 4.93137 5.07053 5.11735 5.16075 5.19659 5.28986 5.37139
5.43983 5.47403 5.48950 5.57492 5.73076 5.76790 6.25051 6.39081
6.42089 6.50888 7.08002 7.17216 7.87917 8.39261 9.20679
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.019560 B = 0.002554 C = 0.002459
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1431.134791 B =10961.375655 C =11382.263894
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.105 4.105
2 C 0.249 3.751
3 N -0.491 5.491
4 C 0.238 3.762
5 C -0.267 4.267
6 C 0.112 3.888
7 N -0.334 5.334
8 N -0.331 5.331
9 C 0.223 3.777
10 C -0.240 4.240
11 C 0.583 3.417
12 O -0.545 6.545
13 N -0.702 5.702
14 C 0.150 3.850
15 H 0.070 0.930
16 C -0.110 4.110
17 C -0.129 4.129
18 C 0.176 3.824
19 N -0.598 5.598
20 C -0.253 4.253
21 H 0.073 0.927
22 C -0.045 4.045
23 N -0.930 5.930
24 Si 0.954 3.046
25 H -0.290 1.290
26 H -0.268 1.268
27 H -0.298 1.298
28 C 0.163 3.837
29 H 0.034 0.966
30 C -0.130 4.130
31 H 0.096 0.904
32 H 0.087 0.913
33 H 0.101 0.899
34 H 0.183 0.817
35 H 0.244 0.756
36 H 0.212 0.788
37 H 0.408 0.592
38 H 0.065 0.935
39 H 0.063 0.937
40 H 0.072 0.928
41 H 0.048 0.952
42 H 0.046 0.954
43 H 0.004 0.996
44 H 0.248 0.752
45 H 0.043 0.957
46 H 0.074 0.926
47 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.152 22.987 3.321 23.790
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.085 3.915
3 N -0.204 5.204
4 C 0.014 3.986
5 C -0.298 4.298
6 C -0.068 4.068
7 N -0.157 5.157
8 N -0.101 5.101
9 C 0.085 3.915
10 C -0.250 4.250
11 C 0.369 3.631
12 O -0.423 6.423
13 N -0.353 5.353
14 C 0.044 3.956
15 H 0.089 0.911
16 C -0.149 4.149
17 C -0.168 4.168
18 C 0.050 3.950
19 N -0.322 5.322
20 C -0.383 4.383
21 H 0.090 0.910
22 C -0.241 4.241
23 N -0.575 5.575
24 Si 0.783 3.217
25 H -0.217 1.217
26 H -0.193 1.193
27 H -0.225 1.225
28 C 0.057 3.943
29 H 0.051 0.949
30 C -0.187 4.187
31 H 0.115 0.885
32 H 0.106 0.894
33 H 0.119 0.881
34 H 0.201 0.799
35 H 0.260 0.740
36 H 0.229 0.771
37 H 0.245 0.755
38 H 0.084 0.916
39 H 0.081 0.919
40 H 0.091 0.909
41 H 0.067 0.933
42 H 0.065 0.935
43 H 0.022 0.978
44 H 0.057 0.943
45 H 0.062 0.938
46 H 0.093 0.907
47 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 4.823 22.670 3.387 23.423
hybrid contribution -0.006 -1.189 -0.512 1.294
sum 4.816 21.481 2.875 22.201
Atomic orbital electron populations
1.21086 0.85119 1.04835 1.05131 1.22221 0.98825 0.85656 0.84806
1.68119 1.04122 1.28405 1.19728 1.21341 0.88582 0.88040 1.00685
1.21472 0.89652 0.99480 1.19160 1.24707 1.00253 0.90163 0.91649
1.77941 0.88680 1.17134 1.31966 1.47298 1.08086 1.06265 1.48442
1.22907 0.91714 0.89525 0.87350 1.20450 0.92006 0.96286 1.16278
1.17393 0.86676 0.82586 0.76450 1.90775 1.14052 1.86814 1.50708
1.45818 1.11190 1.05002 1.73307 1.21378 0.96105 0.81653 0.96508
0.91145 1.21700 1.00462 0.96710 0.96023 1.21928 0.98847 0.95853
1.00211 1.20511 0.95269 0.94851 0.84346 1.44252 1.67299 1.17983
1.02689 1.19412 1.39924 0.87983 0.91016 0.90977 1.25683 1.00614
0.97968 0.99836 1.70202 1.44319 1.07437 1.35577 0.85451 0.78357
0.78077 0.79789 1.21707 1.19257 1.22475 1.20733 0.93304 0.85130
0.95180 0.94866 1.21747 1.01203 1.00455 0.95309 0.88532 0.89432
0.88067 0.79948 0.74037 0.77127 0.75482 0.91600 0.91866 0.90942
0.93309 0.93519 0.97823 0.94280 0.93754 0.90720 0.93513
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -2.08 8.93 71.24 0.64 -1.44 16
2 C 0.25 5.60 6.87 43.51 0.30 5.89 16
3 N -0.49 -11.72 10.37 -179.76 -1.86 -13.58 16
4 C 0.24 5.40 7.91 133.01 1.05 6.45 16
5 C -0.27 -4.57 10.91 22.53 0.25 -4.32 16
6 C 0.11 1.56 11.95 84.92 1.01 2.58 16
7 N -0.33 -6.69 12.65 -57.45 -0.73 -7.41 16
8 N -0.33 -7.06 3.88 -190.85 -0.74 -7.80 16
9 C 0.22 4.02 10.82 83.99 0.91 4.93 16
10 C -0.24 -4.99 5.88 -20.03 -0.12 -5.10 16
11 C 0.58 13.91 7.68 86.72 0.67 14.57 16
12 O -0.54 -16.09 13.10 -4.00 -0.05 -16.14 16
13 N -0.70 -15.80 4.54 -445.26 -2.02 -17.83 16
14 C 0.15 4.58 2.00 45.07 0.09 4.67 16
15 H 0.07 2.53 7.58 -2.39 -0.02 2.51 16
16 C -0.11 -3.38 5.46 30.62 0.17 -3.21 16
17 C -0.13 -4.63 6.06 30.53 0.19 -4.44 16
18 C 0.18 8.00 5.29 86.22 0.46 8.46 16
19 N -0.60 -27.74 2.99 -676.04 -2.02 -29.76 16
20 C -0.25 -13.08 8.55 84.03 0.72 -12.36 16
21 H 0.07 3.64 6.25 -2.91 -0.02 3.62 16
22 C -0.04 -2.43 4.81 84.86 0.41 -2.02 16
23 N -0.93 -53.35 11.53 21.65 0.25 -53.10 16
24 Si 0.95 43.90 29.60 68.60 2.03 45.93 16
25 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16
26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16
27 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16
28 C 0.16 5.87 3.03 44.97 0.14 6.01 16
29 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16
30 C -0.13 -4.30 7.84 71.98 0.56 -3.73 16
31 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16
32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16
33 H 0.10 2.27 5.90 -2.38 -0.01 2.25 16
34 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16
35 H 0.24 0.96 8.06 -2.91 -0.02 0.94 16
36 H 0.21 2.34 6.49 -2.91 -0.02 2.32 16
37 H 0.41 6.73 6.71 -92.71 -0.62 6.11 16
38 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16
39 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16
40 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16
41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16
42 H 0.05 2.44 6.28 -2.39 -0.02 2.43 16
43 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16
44 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16
45 H 0.04 1.57 7.44 -2.39 -0.02 1.55 16
46 H 0.07 1.88 7.81 -2.39 -0.02 1.86 16
47 H 0.05 1.72 7.63 -2.39 -0.02 1.70 16
Total: -1.00 -69.20 375.61 2.67 -66.52
By element:
Atomic # 1 Polarization: 15.85 SS G_CDS: 0.39 Total: 16.24 kcal
Atomic # 6 Polarization: 9.50 SS G_CDS: 7.43 Total: 16.93 kcal
Atomic # 7 Polarization: -122.37 SS G_CDS: -7.12 Total: -129.49 kcal
Atomic # 8 Polarization: -16.09 SS G_CDS: -0.05 Total: -16.14 kcal
Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal
Total: -69.20 2.67 -66.52 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000994130893.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 155.689 kcal
(2) G-P(sol) polarization free energy of solvation -69.195 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.493 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.525 kcal
(6) G-S(sol) free energy of system = (1) + (5) 89.164 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds