Wall clock time and date at job start Sat Apr 11 2020 06:56:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.39969 * 120.32465 * 2 1
4 4 N 1.31496 * 120.10618 * 180.02562 * 3 2 1
5 5 C 1.33379 * 120.85493 * 359.74397 * 4 3 2
6 6 C 1.40807 * 132.47525 * 179.58457 * 5 4 3
7 7 C 1.46583 * 126.54208 * 0.71268 * 6 5 4
8 8 O 1.21710 * 119.99922 * 319.90696 * 7 6 5
9 9 N 1.34773 * 119.99898 * 139.90169 * 7 6 5
10 10 C 1.46929 * 120.63308 * 354.53260 * 9 7 6
11 11 C 1.53191 * 108.77583 * 233.59033 * 10 9 7
12 12 C 1.53042 * 109.31254 * 305.35980 * 11 10 9
13 13 C 1.53043 * 109.53302 * 61.36981 * 12 11 10
14 14 H 1.08991 * 109.52572 * 58.60409 * 13 12 11
15 15 C 1.53006 * 109.49305 * 178.68277 * 13 12 11
16 16 N 1.46500 * 109.47040 * 184.83520 * 15 13 12
17 17 C 1.36929 * 120.00350 * 179.97438 * 16 15 13
18 18 H 1.08003 * 119.99690 * 0.02562 * 17 16 15
19 19 C 1.38811 * 120.00539 * 180.02562 * 17 16 15
20 20 N 1.31623 * 119.99832 * 359.97438 * 19 17 16
21 21 Si 1.86793 * 120.00426 * 180.02562 * 19 17 16
22 22 H 1.48501 * 109.47216 * 270.00095 * 21 19 17
23 23 H 1.48507 * 109.47147 * 29.99878 * 21 19 17
24 24 H 1.48507 * 109.47341 * 149.99617 * 21 19 17
25 25 C 1.46925 * 120.63303 * 174.51500 * 9 7 6
26 26 C 1.40642 * 106.91996 * 180.45793 * 6 5 4
27 27 N 1.30699 * 108.72854 * 0.26119 * 26 6 5
28 28 N 1.36588 * 120.79543 * 0.56456 * 5 4 3
29 29 C 1.35753 * 120.32051 * 180.02562 * 2 1 3
30 30 H 1.09004 * 109.47076 * 269.97321 * 1 2 3
31 31 H 1.09005 * 109.47413 * 29.97133 * 1 2 3
32 32 H 1.09007 * 109.47556 * 149.97822 * 1 2 3
33 33 H 1.07998 * 119.94115 * 0.02721 * 3 2 1
34 34 H 1.09008 * 109.58409 * 353.37286 * 10 9 7
35 35 H 1.08996 * 109.58557 * 113.65938 * 10 9 7
36 36 H 1.08995 * 109.50020 * 65.31770 * 11 10 9
37 37 H 1.09004 * 109.49591 * 185.38198 * 11 10 9
38 38 H 1.08998 * 109.46420 * 301.34815 * 12 11 10
39 39 H 1.09000 * 109.46086 * 181.38985 * 12 11 10
40 40 H 1.08997 * 109.47264 * 64.83872 * 15 13 12
41 41 H 1.08993 * 109.47431 * 304.83685 * 15 13 12
42 42 H 0.97006 * 119.99687 * 0.02562 * 16 15 13
43 43 H 0.97006 * 119.99810 * 0.02562 * 20 19 17
44 44 H 1.09000 * 109.58509 * 6.62005 * 25 9 7
45 45 H 1.09000 * 109.58640 * 246.20038 * 25 9 7
46 46 H 1.08002 * 125.63974 * 180.23952 * 26 6 5
47 47 H 1.07999 * 120.42540 * 359.97438 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2137 1.2082 0.0000
4 7 3.5286 1.2032 -0.0005
5 6 4.2083 0.0556 0.0041
6 6 5.5864 -0.2334 -0.0028
7 6 6.6823 0.7402 -0.0031
8 8 6.5989 1.7500 -0.6774
9 7 7.7821 0.5170 0.7432
10 6 7.8484 -0.6347 1.6531
11 6 8.2142 -0.1356 3.0545
12 6 9.5063 0.6813 2.9795
13 6 9.2915 1.8967 2.0746
14 1 8.4769 2.5046 2.4683
15 6 10.5736 2.7304 2.0265
16 7 10.3329 3.9522 1.2549
17 6 11.3430 4.8592 1.0759
18 1 12.3174 4.6735 1.5032
19 6 11.1149 6.0172 0.3453
20 7 9.9276 6.2432 -0.1760
21 14 12.4931 7.2540 0.1005
22 1 12.4716 8.2445 1.2068
23 1 13.7985 6.5460 0.0954
24 1 12.3050 7.9548 -1.1952
25 6 8.9378 1.4207 0.6622
26 6 5.7109 -1.6342 -0.0032
27 7 4.5152 -2.1618 -0.0028
28 7 3.5552 -1.1440 -0.0021
29 6 2.1923 -1.1718 -0.0005
30 1 -0.3633 -0.0005 1.0277
31 1 -0.3634 0.8903 -0.5134
32 1 -0.3634 -0.8898 -0.5142
33 1 1.6780 2.1460 0.0004
34 1 6.8789 -1.1322 1.6840
35 1 8.6071 -1.3342 1.3024
36 1 7.4095 0.4909 3.4392
37 1 8.3604 -0.9882 3.7177
38 1 10.3047 0.0614 2.5715
39 1 9.7822 1.0169 3.9791
40 1 11.3659 2.1513 1.5521
41 1 10.8737 2.9942 3.0405
42 1 9.4576 4.1191 0.8714
43 1 9.2119 5.6007 -0.0492
44 1 8.6873 2.2793 0.0392
45 1 9.7871 0.8899 0.2321
46 1 6.6409 -2.1834 -0.0042
47 1 1.6645 -2.1141 -0.0005
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001491173046.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:56:43
Heat of formation + Delta-G solvation = 98.020315 kcal
Electronic energy + Delta-G solvation = -29804.272287 eV
Core-core repulsion = 25796.591695 eV
Total energy + Delta-G solvation = -4007.680592 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-42.82988 -39.95717 -38.61178 -37.34216 -35.02156 -34.72534 -33.30562 -32.66690
-31.65722 -30.20035 -29.37847 -27.56218 -25.66374 -25.22100 -25.09100 -23.15626
-23.01052 -22.30045 -21.38907 -20.25373 -19.38368 -18.48313 -17.53186 -17.23634
-17.02012 -16.57398 -15.80107 -15.58849 -14.98934 -14.77141 -14.54497 -14.40494
-14.14347 -14.08080 -13.85883 -13.60068 -13.41688 -13.38189 -13.03824 -12.93074
-12.83702 -12.71600 -12.41350 -12.38245 -11.81472 -11.66868 -11.30782 -11.04157
-10.70688 -10.59647 -10.55196 -10.36049 -10.17485 -10.12780 -9.89449 -9.81514
-9.60785 -9.03735 -8.76636 -8.43861 -8.19672 -6.86592 -5.96183 -2.96057
0.03720 0.37521 1.54680 1.90893 2.79687 3.04258 3.42684 3.45501
3.59125 3.65144 3.68025 3.79283 3.88359 4.18618 4.34699 4.65609
4.73826 4.75693 4.83182 4.87299 4.92316 4.96172 4.99562 5.11463
5.21249 5.26867 5.33768 5.36291 5.49520 5.57316 5.68397 5.74725
5.78870 5.84374 5.86814 5.97781 6.04241 6.11240 6.14031 6.18253
6.42700 6.55121 6.73723 6.80828 6.90851 6.93048 7.25374 7.62837
7.93019 8.48173 8.90000 9.37674 10.23878 10.39054 11.52387
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.014318 B = 0.002626 C = 0.002326
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1955.171994 B =10661.855364 C =12034.104072
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.097 4.097
2 C -0.188 4.188
3 C 0.189 3.811
4 N -0.441 5.441
5 C 0.307 3.693
6 C -0.275 4.275
7 C 0.595 3.405
8 O -0.519 6.519
9 N -0.609 5.609
10 C 0.103 3.897
11 C -0.133 4.133
12 C -0.111 4.111
13 C -0.109 4.109
14 H 0.072 0.928
15 C 0.167 3.833
16 N -0.744 5.744
17 C -0.333 4.333
18 H 0.063 0.937
19 C -0.046 4.046
20 N -0.943 5.943
21 Si 1.084 2.916
22 H -0.296 1.296
23 H -0.296 1.296
24 H -0.288 1.288
25 C 0.125 3.875
26 C 0.124 3.876
27 N -0.312 5.312
28 N -0.304 5.304
29 C 0.158 3.842
30 H 0.080 0.920
31 H 0.081 0.919
32 H 0.074 0.926
33 H 0.185 0.815
34 H 0.081 0.919
35 H 0.069 0.931
36 H 0.064 0.936
37 H 0.072 0.928
38 H 0.064 0.936
39 H 0.065 0.935
40 H 0.020 0.980
41 H 0.021 0.979
42 H 0.369 0.631
43 H 0.258 0.742
44 H 0.100 0.900
45 H 0.066 0.934
46 H 0.206 0.794
47 H 0.182 0.818
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.608 -22.330 4.368 30.036
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.194 4.194
3 C 0.005 3.995
4 N -0.150 5.150
5 C 0.076 3.924
6 C -0.291 4.291
7 C 0.382 3.618
8 O -0.394 6.394
9 N -0.342 5.342
10 C -0.020 4.020
11 C -0.171 4.171
12 C -0.149 4.149
13 C -0.128 4.128
14 H 0.091 0.909
15 C 0.039 3.961
16 N -0.391 5.391
17 C -0.465 4.465
18 H 0.082 0.918
19 C -0.244 4.244
20 N -0.588 5.588
21 Si 0.915 3.085
22 H -0.224 1.224
23 H -0.222 1.222
24 H -0.214 1.214
25 C 0.003 3.997
26 C -0.056 4.056
27 N -0.134 5.134
28 N -0.073 5.073
29 C 0.022 3.978
30 H 0.098 0.902
31 H 0.100 0.900
32 H 0.093 0.907
33 H 0.201 0.799
34 H 0.099 0.901
35 H 0.087 0.913
36 H 0.083 0.917
37 H 0.091 0.909
38 H 0.083 0.917
39 H 0.084 0.916
40 H 0.038 0.962
41 H 0.039 0.961
42 H 0.202 0.798
43 H 0.069 0.931
44 H 0.118 0.882
45 H 0.084 0.916
46 H 0.222 0.778
47 H 0.199 0.801
Dipole moment (debyes) X Y Z Total
from point charges -18.887 -20.838 3.368 28.325
hybrid contribution -0.621 -1.577 0.747 1.852
sum -19.507 -22.415 4.115 29.998
Atomic orbital electron populations
1.20629 0.87329 1.04156 1.03434 1.20621 0.99231 0.92300 1.07228
1.23621 0.88858 0.98702 0.88305 1.68307 1.08743 1.24029 1.13948
1.20345 0.93023 0.81257 0.97764 1.19426 0.90253 0.93848 1.25576
1.16824 0.80619 0.84686 0.79666 1.90882 1.79009 1.27468 1.42048
1.47946 1.16233 1.28183 1.41887 1.21885 1.01941 0.88309 0.89857
1.21898 0.98803 1.00232 0.96156 1.21506 0.96816 0.96475 1.00092
1.21706 0.99845 0.96303 0.94967 0.90939 1.20560 0.93044 0.87549
0.94968 1.42435 1.12417 1.20515 1.63685 1.20028 0.92537 1.01666
1.32222 0.91849 1.25772 1.02368 0.98516 0.97784 1.70809 1.02202
1.38509 1.47278 0.83193 0.73582 0.75379 0.76370 1.22437 1.22245
1.21423 1.21670 0.86226 0.94108 0.97677 1.24166 0.96550 0.92115
0.92773 1.77575 0.96211 1.08305 1.31322 1.46961 1.06057 1.07824
1.46426 1.21937 0.79308 1.01235 0.95320 0.90177 0.89984 0.90713
0.79857 0.90057 0.91307 0.91686 0.90947 0.91680 0.91593 0.96190
0.96103 0.79766 0.93077 0.88209 0.91552 0.77769 0.80114
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.19 10.03 36.00 0.36 0.17 16
2 C -0.19 -1.12 5.86 -104.86 -0.61 -1.73 16
3 C 0.19 1.64 10.97 -17.05 -0.19 1.45 16
4 N -0.44 -6.26 10.47 -12.00 -0.13 -6.39 16
5 C 0.31 4.44 7.88 -155.84 -1.23 3.21 16
6 C -0.27 -4.09 5.26 -104.65 -0.55 -4.64 16
7 C 0.59 10.70 7.56 -12.90 -0.10 10.60 16
8 O -0.52 -11.90 16.51 5.18 0.09 -11.81 16
9 N -0.61 -9.45 2.97 -174.34 -0.52 -9.97 16
10 C 0.10 1.14 5.44 -3.71 -0.02 1.12 16
11 C -0.13 -1.45 6.08 -26.61 -0.16 -1.62 16
12 C -0.11 -1.44 5.17 -26.69 -0.14 -1.58 16
13 C -0.11 -1.89 2.38 -90.50 -0.22 -2.10 16
14 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16
15 C 0.17 3.55 5.65 -4.04 -0.02 3.53 16
16 N -0.74 -20.06 5.37 -59.91 -0.32 -20.38 16
17 C -0.33 -9.94 9.99 -15.06 -0.15 -10.10 16
18 H 0.06 1.85 7.83 -52.48 -0.41 1.44 16
19 C -0.05 -1.43 5.50 -17.43 -0.10 -1.52 16
20 N -0.94 -31.07 13.70 55.49 0.76 -30.31 16
21 Si 1.08 27.29 29.92 -169.99 -5.09 22.20 16
22 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16
23 H -0.30 -6.99 7.11 56.52 0.40 -6.59 16
24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16
25 C 0.12 2.24 5.53 -3.71 -0.02 2.22 16
26 C 0.12 1.40 9.55 -17.13 -0.16 1.23 16
27 N -0.31 -3.60 12.58 30.76 0.39 -3.22 16
28 N -0.30 -3.48 3.86 -11.97 -0.05 -3.53 16
29 C 0.16 1.14 10.94 -16.45 -0.18 0.96 16
30 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16
31 H 0.08 0.10 8.10 -51.93 -0.42 -0.32 16
32 H 0.07 0.07 8.09 -51.93 -0.42 -0.35 16
33 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16
34 H 0.08 0.80 4.75 -51.92 -0.25 0.55 16
35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16
37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16
41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16
42 H 0.37 10.42 5.72 -40.82 -0.23 10.18 16
43 H 0.26 8.53 6.78 -40.82 -0.28 8.25 16
44 H 0.10 2.22 6.20 -51.93 -0.32 1.90 16
45 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16
46 H 0.21 1.56 7.28 -52.49 -0.38 1.17 16
47 H 0.18 0.65 8.06 -52.49 -0.42 0.22 16
LS Contribution 382.76 15.07 5.77 5.77
Total: -1.00 -41.12 382.76 -9.16 -50.28
By element:
Atomic # 1 Polarization: 12.73 SS G_CDS: -6.58 Total: 6.15 kcal
Atomic # 6 Polarization: 4.68 SS G_CDS: -3.48 Total: 1.19 kcal
Atomic # 7 Polarization: -73.92 SS G_CDS: 0.14 Total: -73.79 kcal
Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal
Atomic # 14 Polarization: 27.29 SS G_CDS: -5.09 Total: 22.20 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -41.12 -9.16 -50.28 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001491173046.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 148.304 kcal
(2) G-P(sol) polarization free energy of solvation -41.122 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.182 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.284 kcal
(6) G-S(sol) free energy of system = (1) + (5) 98.020 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds