Wall clock time and date at job start Sat Apr 11 2020 06:56:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.39969 * 120.32465 * 2 1
4 4 N 1.31496 * 120.10618 * 180.02562 * 3 2 1
5 5 C 1.33379 * 120.85493 * 359.74397 * 4 3 2
6 6 C 1.40807 * 132.47525 * 179.58457 * 5 4 3
7 7 C 1.46583 * 126.54208 * 0.71268 * 6 5 4
8 8 O 1.21710 * 119.99922 * 319.90696 * 7 6 5
9 9 N 1.34773 * 119.99898 * 139.90169 * 7 6 5
10 10 C 1.46929 * 120.63308 * 354.53260 * 9 7 6
11 11 C 1.53191 * 108.77583 * 233.59033 * 10 9 7
12 12 C 1.53042 * 109.31254 * 305.35980 * 11 10 9
13 13 C 1.53043 * 109.53302 * 61.36981 * 12 11 10
14 14 H 1.08991 * 109.52572 * 58.60409 * 13 12 11
15 15 C 1.53006 * 109.49305 * 178.68277 * 13 12 11
16 16 N 1.46500 * 109.47040 * 184.83520 * 15 13 12
17 17 C 1.36929 * 120.00350 * 179.97438 * 16 15 13
18 18 H 1.08003 * 119.99690 * 0.02562 * 17 16 15
19 19 C 1.38811 * 120.00539 * 180.02562 * 17 16 15
20 20 N 1.31623 * 119.99832 * 359.97438 * 19 17 16
21 21 Si 1.86793 * 120.00426 * 180.02562 * 19 17 16
22 22 H 1.48501 * 109.47216 * 270.00095 * 21 19 17
23 23 H 1.48507 * 109.47147 * 29.99878 * 21 19 17
24 24 H 1.48507 * 109.47341 * 149.99617 * 21 19 17
25 25 C 1.46925 * 120.63303 * 174.51500 * 9 7 6
26 26 C 1.40642 * 106.91996 * 180.45793 * 6 5 4
27 27 N 1.30699 * 108.72854 * 0.26119 * 26 6 5
28 28 N 1.36588 * 120.79543 * 0.56456 * 5 4 3
29 29 C 1.35753 * 120.32051 * 180.02562 * 2 1 3
30 30 H 1.09004 * 109.47076 * 269.97321 * 1 2 3
31 31 H 1.09005 * 109.47413 * 29.97133 * 1 2 3
32 32 H 1.09007 * 109.47556 * 149.97822 * 1 2 3
33 33 H 1.07998 * 119.94115 * 0.02721 * 3 2 1
34 34 H 1.09008 * 109.58409 * 353.37286 * 10 9 7
35 35 H 1.08996 * 109.58557 * 113.65938 * 10 9 7
36 36 H 1.08995 * 109.50020 * 65.31770 * 11 10 9
37 37 H 1.09004 * 109.49591 * 185.38198 * 11 10 9
38 38 H 1.08998 * 109.46420 * 301.34815 * 12 11 10
39 39 H 1.09000 * 109.46086 * 181.38985 * 12 11 10
40 40 H 1.08997 * 109.47264 * 64.83872 * 15 13 12
41 41 H 1.08993 * 109.47431 * 304.83685 * 15 13 12
42 42 H 0.97006 * 119.99687 * 0.02562 * 16 15 13
43 43 H 0.97006 * 119.99810 * 0.02562 * 20 19 17
44 44 H 1.09000 * 109.58509 * 6.62005 * 25 9 7
45 45 H 1.09000 * 109.58640 * 246.20038 * 25 9 7
46 46 H 1.08002 * 125.63974 * 180.23952 * 26 6 5
47 47 H 1.07999 * 120.42540 * 359.97438 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2137 1.2082 0.0000
4 7 3.5286 1.2032 -0.0005
5 6 4.2083 0.0556 0.0041
6 6 5.5864 -0.2334 -0.0028
7 6 6.6823 0.7402 -0.0031
8 8 6.5989 1.7500 -0.6774
9 7 7.7821 0.5170 0.7432
10 6 7.8484 -0.6347 1.6531
11 6 8.2142 -0.1356 3.0545
12 6 9.5063 0.6813 2.9795
13 6 9.2915 1.8967 2.0746
14 1 8.4769 2.5046 2.4683
15 6 10.5736 2.7304 2.0265
16 7 10.3329 3.9522 1.2549
17 6 11.3430 4.8592 1.0759
18 1 12.3174 4.6735 1.5032
19 6 11.1149 6.0172 0.3453
20 7 9.9276 6.2432 -0.1760
21 14 12.4931 7.2540 0.1005
22 1 12.4716 8.2445 1.2068
23 1 13.7985 6.5460 0.0954
24 1 12.3050 7.9548 -1.1952
25 6 8.9378 1.4207 0.6622
26 6 5.7109 -1.6342 -0.0032
27 7 4.5152 -2.1618 -0.0028
28 7 3.5552 -1.1440 -0.0021
29 6 2.1923 -1.1718 -0.0005
30 1 -0.3633 -0.0005 1.0277
31 1 -0.3634 0.8903 -0.5134
32 1 -0.3634 -0.8898 -0.5142
33 1 1.6780 2.1460 0.0004
34 1 6.8789 -1.1322 1.6840
35 1 8.6071 -1.3342 1.3024
36 1 7.4095 0.4909 3.4392
37 1 8.3604 -0.9882 3.7177
38 1 10.3047 0.0614 2.5715
39 1 9.7822 1.0169 3.9791
40 1 11.3659 2.1513 1.5521
41 1 10.8737 2.9942 3.0405
42 1 9.4576 4.1191 0.8714
43 1 9.2119 5.6007 -0.0492
44 1 8.6873 2.2793 0.0392
45 1 9.7871 0.8899 0.2321
46 1 6.6409 -2.1834 -0.0042
47 1 1.6645 -2.1141 -0.0005
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001491173046.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:56:42
Heat of formation + Delta-G solvation = 68.021319 kcal
Electronic energy + Delta-G solvation = -29805.573141 eV
Core-core repulsion = 25796.591695 eV
Total energy + Delta-G solvation = -4008.981446 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-43.65012 -41.18110 -39.43773 -38.74769 -36.86615 -35.49254 -34.68706 -33.62321
-33.07850 -31.54346 -30.75592 -28.22258 -26.91134 -26.71631 -25.87798 -25.01387
-24.00653 -23.21729 -22.67790 -21.54725 -20.46993 -19.42194 -19.30771 -18.38790
-18.12438 -17.46605 -17.09515 -16.63267 -16.38117 -16.16385 -15.89263 -15.77935
-15.35200 -15.11086 -14.97667 -14.65588 -14.46950 -14.28202 -14.11270 -14.06385
-13.89490 -13.75930 -13.47409 -13.11809 -13.05619 -12.73591 -12.67029 -12.57827
-12.25084 -12.09170 -11.90152 -11.86373 -11.70384 -11.56214 -11.19678 -10.98693
-10.95377 -10.90156 -10.52897 -9.71009 -9.13920 -9.09952 -8.42442 -5.36254
-0.69559 -0.34941 0.79958 0.97827 1.55210 1.68308 1.75921 1.82221
2.00990 2.34230 2.71184 2.72828 2.86912 3.35601 3.38747 3.55403
3.68934 3.70880 3.79375 3.82016 3.85451 4.00565 4.05437 4.09726
4.24082 4.27946 4.34754 4.38178 4.53937 4.67943 4.74835 4.80147
4.82189 4.84489 4.88776 4.94034 4.94418 5.01337 5.06366 5.14548
5.21879 5.26851 5.37514 5.42215 5.52523 5.56160 6.10505 6.39045
6.43185 6.49872 7.05833 7.18408 7.95700 8.10007 9.08604
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.014318 B = 0.002626 C = 0.002326
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1955.171994 B =10661.855364 C =12034.104072
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.094 4.094
2 C -0.169 4.169
3 C 0.191 3.809
4 N -0.509 5.509
5 C 0.293 3.707
6 C -0.320 4.320
7 C 0.590 3.410
8 O -0.592 6.592
9 N -0.603 5.603
10 C 0.097 3.903
11 C -0.126 4.126
12 C -0.103 4.103
13 C -0.095 4.095
14 H 0.042 0.958
15 C 0.164 3.836
16 N -0.761 5.761
17 C -0.334 4.334
18 H 0.073 0.927
19 C -0.113 4.113
20 N -0.976 5.976
21 Si 1.136 2.864
22 H -0.282 1.282
23 H -0.268 1.268
24 H -0.294 1.294
25 C 0.132 3.868
26 C 0.143 3.857
27 N -0.317 5.317
28 N -0.305 5.305
29 C 0.150 3.850
30 H 0.095 0.905
31 H 0.093 0.907
32 H 0.095 0.905
33 H 0.212 0.788
34 H 0.097 0.903
35 H 0.104 0.896
36 H 0.045 0.955
37 H 0.115 0.885
38 H 0.086 0.914
39 H 0.075 0.925
40 H 0.030 0.970
41 H 0.026 0.974
42 H 0.356 0.644
43 H 0.239 0.761
44 H 0.043 0.957
45 H 0.079 0.921
46 H 0.239 0.761
47 H 0.223 0.777
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.477 -25.734 5.920 33.415
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.175 4.175
3 C 0.011 3.989
4 N -0.221 5.221
5 C 0.060 3.940
6 C -0.336 4.336
7 C 0.380 3.620
8 O -0.472 6.472
9 N -0.335 5.335
10 C -0.024 4.024
11 C -0.164 4.164
12 C -0.141 4.141
13 C -0.115 4.115
14 H 0.061 0.939
15 C 0.038 3.962
16 N -0.406 5.406
17 C -0.466 4.466
18 H 0.091 0.909
19 C -0.303 4.303
20 N -0.624 5.624
21 Si 0.960 3.040
22 H -0.209 1.209
23 H -0.193 1.193
24 H -0.221 1.221
25 C 0.009 3.991
26 C -0.038 4.038
27 N -0.139 5.139
28 N -0.072 5.072
29 C 0.016 3.984
30 H 0.114 0.886
31 H 0.111 0.889
32 H 0.113 0.887
33 H 0.228 0.772
34 H 0.115 0.885
35 H 0.122 0.878
36 H 0.064 0.936
37 H 0.133 0.867
38 H 0.105 0.895
39 H 0.093 0.907
40 H 0.048 0.952
41 H 0.044 0.956
42 H 0.187 0.813
43 H 0.049 0.951
44 H 0.062 0.938
45 H 0.097 0.903
46 H 0.255 0.745
47 H 0.240 0.760
Dipole moment (debyes) X Y Z Total
from point charges -19.780 -24.343 4.998 31.762
hybrid contribution -0.571 -0.560 0.308 0.857
sum -20.352 -24.903 5.305 32.596
Atomic orbital electron populations
1.20786 0.83743 1.05780 1.04839 1.21076 1.01232 0.90712 1.04479
1.24350 0.87649 1.01333 0.85566 1.68308 1.11362 1.24985 1.17443
1.20447 0.93455 0.82393 0.97731 1.19213 0.89705 0.94744 1.29975
1.17399 0.81536 0.84374 0.78712 1.90825 1.80491 1.30704 1.45209
1.48006 1.14757 1.28757 1.42010 1.22294 1.04134 0.87041 0.88919
1.21901 0.96788 1.01021 0.96726 1.21498 0.98804 0.94598 0.99218
1.21558 0.96753 0.97533 0.95647 0.93946 1.20779 0.95281 0.86079
0.94068 1.42741 1.11382 1.22118 1.64343 1.20469 0.93302 1.01916
1.30882 0.90948 1.27455 1.03729 1.01242 0.97861 1.70954 1.03079
1.38627 1.49770 0.82545 0.71775 0.73472 0.76214 1.20884 1.19256
1.22088 1.21356 0.87505 0.93103 0.97119 1.24555 0.97700 0.90417
0.91086 1.77510 0.96226 1.08321 1.31821 1.47166 1.07348 1.06748
1.45988 1.22883 0.77853 1.03510 0.94199 0.88622 0.88854 0.88658
0.77164 0.88465 0.87784 0.93597 0.86663 0.89521 0.90681 0.95201
0.95639 0.81284 0.95113 0.93814 0.90294 0.74507 0.76007
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 0.00 10.03 71.24 0.71 0.71 16
2 C -0.17 -1.62 5.86 -20.02 -0.12 -1.73 16
3 C 0.19 3.26 10.97 85.16 0.93 4.19 16
4 N -0.51 -15.40 10.47 -191.88 -2.01 -17.41 16
5 C 0.29 8.81 7.88 133.99 1.06 9.87 16
6 C -0.32 -9.94 5.26 -19.89 -0.10 -10.05 16
7 C 0.59 23.02 7.56 86.42 0.65 23.67 16
8 O -0.59 -30.40 16.51 -4.38 -0.07 -30.48 16
9 N -0.60 -19.52 2.97 -823.71 -2.45 -21.97 16
10 C 0.10 1.94 5.44 86.36 0.47 2.41 16
11 C -0.13 -2.45 6.08 30.67 0.19 -2.26 16
12 C -0.10 -2.48 5.17 30.62 0.16 -2.32 16
13 C -0.10 -3.43 2.38 -10.71 -0.03 -3.45 16
14 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16
15 C 0.16 7.14 5.65 86.38 0.49 7.63 16
16 N -0.76 -43.09 5.37 -343.46 -1.85 -44.94 16
17 C -0.33 -20.42 9.99 84.03 0.84 -19.58 16
18 H 0.07 4.21 7.83 -2.91 -0.02 4.19 16
19 C -0.11 -7.10 5.50 84.86 0.47 -6.63 16
20 N -0.98 -67.54 13.70 21.65 0.30 -67.24 16
21 Si 1.14 55.63 29.92 68.60 2.05 57.69 16
22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16
23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16
24 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16
25 C 0.13 5.05 5.53 86.36 0.48 5.53 16
26 C 0.14 3.07 9.55 85.45 0.82 3.89 16
27 N -0.32 -6.83 12.58 -56.58 -0.71 -7.54 16
28 N -0.31 -6.69 3.86 -191.79 -0.74 -7.43 16
29 C 0.15 1.79 10.94 83.42 0.91 2.71 16
30 H 0.10 -0.17 8.14 -2.39 -0.02 -0.19 16
31 H 0.09 -0.12 8.10 -2.38 -0.02 -0.14 16
32 H 0.09 -0.29 8.09 -2.38 -0.02 -0.31 16
33 H 0.21 2.03 8.06 -2.91 -0.02 2.00 16
34 H 0.10 1.70 4.75 -2.38 -0.01 1.69 16
35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16
36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16
37 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16
38 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16
39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16
40 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16
41 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16
42 H 0.36 21.82 5.72 -92.70 -0.53 21.29 16
43 H 0.24 16.98 6.78 -92.70 -0.63 16.35 16
44 H 0.04 2.17 6.20 -2.39 -0.01 2.16 16
45 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16
46 H 0.24 3.01 7.28 -2.91 -0.02 2.99 16
47 H 0.22 0.64 8.06 -2.91 -0.02 0.61 16
Total: -1.00 -100.45 382.76 3.06 -97.39
By element:
Atomic # 1 Polarization: 26.74 SS G_CDS: 0.61 Total: 27.36 kcal
Atomic # 6 Polarization: 6.65 SS G_CDS: 7.93 Total: 14.58 kcal
Atomic # 7 Polarization: -159.07 SS G_CDS: -7.46 Total: -166.53 kcal
Atomic # 8 Polarization: -30.40 SS G_CDS: -0.07 Total: -30.48 kcal
Atomic # 14 Polarization: 55.63 SS G_CDS: 2.05 Total: 57.69 kcal
Total: -100.45 3.06 -97.39 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001491173046.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 165.407 kcal
(2) G-P(sol) polarization free energy of solvation -100.445 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.962 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.385 kcal
(6) G-S(sol) free energy of system = (1) + (5) 68.021 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds