Wall clock time and date at job start Sat Apr 11 2020 06:56:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50690 * 1
3 3 N 1.30727 * 126.27486 * 2 1
4 4 N 1.28647 * 110.34526 * 179.97438 * 3 2 1
5 5 C 1.32184 * 109.56865 * 0.02562 * 4 3 2
6 6 C 1.41045 * 133.26102 * 180.02562 * 5 4 3
7 7 C 1.35639 * 119.40075 * 179.97438 * 6 5 4
8 8 C 1.41813 * 119.60491 * 359.97438 * 7 6 5
9 9 C 1.47595 * 119.98417 * 180.02562 * 8 7 6
10 10 O 1.21586 * 120.00175 * 179.97438 * 9 8 7
11 11 N 1.34777 * 120.00269 * 359.97438 * 9 8 7
12 12 C 1.46499 * 120.00194 * 180.02562 * 11 9 8
13 13 H 1.08999 * 109.49850 * 35.06647 * 12 11 9
14 14 C 1.53187 * 109.49400 * 274.99743 * 12 11 9
15 15 N 1.46931 * 108.77307 * 185.41675 * 14 12 11
16 16 C 1.36940 * 120.63011 * 233.58621 * 15 14 12
17 17 H 1.08004 * 119.99892 * 27.69827 * 16 15 14
18 18 C 1.38814 * 120.00265 * 207.69742 * 16 15 14
19 19 N 1.31612 * 119.99931 * 17.35595 * 18 16 15
20 20 Si 1.86801 * 120.00047 * 197.35790 * 18 16 15
21 21 H 1.48500 * 109.47011 * 59.99979 * 20 18 16
22 22 H 1.48495 * 109.47124 * 179.97438 * 20 18 16
23 23 H 1.48499 * 109.47079 * 300.00031 * 20 18 16
24 24 C 1.46923 * 118.74185 * 53.60629 * 15 14 12
25 25 C 1.53189 * 108.77631 * 306.39830 * 24 15 14
26 26 C 1.53035 * 109.31413 * 54.62898 * 25 24 15
27 27 H 1.09001 * 109.45945 * 58.66186 * 26 25 24
28 28 C 1.53006 * 109.45775 * 178.61729 * 26 25 24
29 29 C 1.36499 * 120.03554 * 0.27246 * 8 7 6
30 30 N 1.35848 * 120.38206 * 359.45080 * 29 8 7
31 31 H 1.09003 * 109.47511 * 90.02186 * 1 2 3
32 32 H 1.08997 * 109.47084 * 210.02375 * 1 2 3
33 33 H 1.08998 * 109.47642 * 330.02618 * 1 2 3
34 34 H 1.08001 * 120.30050 * 0.02562 * 6 5 4
35 35 H 1.08008 * 120.19747 * 179.97438 * 7 6 5
36 36 H 0.97004 * 119.99848 * 0.02562 * 11 9 8
37 37 H 1.09000 * 109.59114 * 65.63050 * 14 12 11
38 38 H 1.08997 * 109.58993 * 305.19970 * 14 12 11
39 39 H 0.97000 * 120.00190 * 179.97438 * 19 18 16
40 40 H 1.09003 * 109.58769 * 186.60185 * 24 15 14
41 41 H 1.09004 * 109.70181 * 66.25117 * 24 15 14
42 42 H 1.09000 * 109.49576 * 174.58485 * 25 24 15
43 43 H 1.09004 * 109.49077 * 294.67787 * 25 24 15
44 44 H 1.08993 * 109.47377 * 59.99729 * 28 26 25
45 45 H 1.09000 * 109.47124 * 180.02562 * 28 26 25
46 46 H 1.08996 * 109.46854 * 299.99960 * 28 26 25
47 47 H 1.07999 * 119.80809 * 179.70946 * 29 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.2804 1.0539 0.0000
4 7 3.5174 0.7008 0.0005
5 6 3.6013 -0.6183 0.0004
6 6 4.6877 -1.5178 0.0012
7 6 4.4471 -2.8527 0.0012
8 6 3.1093 -3.3234 0.0010
9 6 2.8378 -4.7741 0.0016
10 8 1.6910 -5.1780 0.0019
11 7 3.8611 -5.6513 0.0019
12 6 3.5915 -7.0912 0.0019
13 1 2.6981 -7.2942 -0.5885
14 6 3.3736 -7.5705 1.4405
15 7 3.2343 -9.0332 1.4357
16 6 2.1483 -9.6326 2.0157
17 1 1.2085 -9.1039 2.0774
18 6 2.2552 -10.9197 2.5245
19 7 3.4417 -11.4355 2.7657
20 14 0.7149 -11.9197 2.8667
21 1 -0.0519 -12.0943 1.6070
22 1 1.0978 -13.2511 3.4012
23 1 -0.1256 -11.2087 3.8633
24 6 4.2827 -9.8405 0.7971
25 6 4.4906 -9.3357 -0.6343
26 6 4.7846 -7.8342 -0.6037
27 1 5.6723 -7.6502 0.0014
28 6 5.0269 -7.3332 -2.0290
29 6 2.0726 -2.4354 -0.0049
30 7 2.3131 -1.0984 0.0007
31 1 -0.3634 -0.0004 -1.0277
32 1 -0.3633 -0.8897 0.5142
33 1 -0.3634 0.8902 0.5134
34 1 5.7021 -1.1471 0.0026
35 1 5.2693 -3.5530 0.0015
36 1 4.7760 -5.3291 0.0021
37 1 2.4670 -7.1185 1.8429
38 1 4.2289 -7.2869 2.0537
39 1 3.5165 -12.3348 3.1215
40 1 3.9759 -10.8863 0.7749
41 1 5.2129 -9.7444 1.3571
42 1 5.3309 -9.8619 -1.0871
43 1 3.5888 -9.5181 -1.2188
44 1 4.1397 -7.5176 -2.6347
45 1 5.2367 -6.2638 -2.0074
46 1 5.8773 -7.8614 -2.4601
47 1 1.0553 -2.7979 -0.0098
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000967085418.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:56:34
Heat of formation + Delta-G solvation = 70.729838 kcal
Electronic energy + Delta-G solvation = -29829.587298 eV
Core-core repulsion = 25820.723302 eV
Total energy + Delta-G solvation = -4008.863996 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-44.75484 -41.40645 -39.60388 -38.59287 -36.27032 -35.58255 -34.51990 -33.08629
-32.96842 -31.86620 -30.48194 -28.93980 -28.51596 -26.35878 -25.63857 -24.71783
-23.79765 -22.76163 -22.66786 -21.80884 -21.05191 -19.48862 -18.70835 -18.38554
-18.15233 -17.88961 -17.11442 -16.75318 -16.17533 -16.01759 -15.85623 -15.46762
-15.26876 -15.11764 -14.95044 -14.52165 -14.49413 -14.15532 -14.11927 -13.62009
-13.55724 -13.52162 -13.20437 -13.15455 -13.11202 -12.78501 -12.72700 -12.63529
-12.31087 -12.20281 -12.00872 -11.94983 -11.74416 -11.64825 -11.47479 -11.23996
-11.08225 -10.77859 -10.58189 -10.14644 -9.23648 -8.68251 -7.89816 -5.34517
-0.72735 -0.23714 0.96744 1.25995 1.45286 1.47224 1.54243 1.74981
2.01538 2.37938 2.50805 2.87768 3.24648 3.30050 3.33314 3.45596
3.58817 3.63146 3.76101 3.78709 4.04355 4.14281 4.16099 4.31457
4.48064 4.54329 4.57224 4.67071 4.70391 4.73254 4.79375 4.82654
4.88532 4.96111 4.98314 4.99353 5.07220 5.12862 5.18774 5.20503
5.26108 5.45269 5.49994 5.56775 5.62335 5.64930 5.80186 6.37431
6.47166 7.11835 7.15089 7.29713 7.84430 8.33180 9.15613
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.016432 B = 0.002539 C = 0.002304
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1703.545149 B =11025.912590 C =12151.256857
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 C 0.154 3.846
3 N -0.287 5.287
4 N -0.328 5.328
5 C 0.189 3.811
6 C -0.081 4.081
7 C -0.051 4.051
8 C -0.149 4.149
9 C 0.569 3.431
10 O -0.572 6.572
11 N -0.692 5.692
12 C 0.151 3.849
13 H 0.063 0.937
14 C 0.142 3.858
15 N -0.606 5.606
16 C -0.266 4.266
17 H 0.055 0.945
18 C -0.044 4.044
19 N -0.929 5.929
20 Si 0.962 3.038
21 H -0.279 1.279
22 H -0.289 1.289
23 H -0.279 1.279
24 C 0.171 3.829
25 C -0.123 4.123
26 C -0.083 4.083
27 H 0.084 0.916
28 C -0.137 4.137
29 C 0.139 3.861
30 N -0.400 5.400
31 H 0.106 0.894
32 H 0.097 0.903
33 H 0.109 0.891
34 H 0.192 0.808
35 H 0.189 0.811
36 H 0.417 0.583
37 H 0.033 0.967
38 H 0.023 0.977
39 H 0.252 0.748
40 H 0.052 0.948
41 H 0.005 0.995
42 H 0.081 0.919
43 H 0.046 0.954
44 H 0.043 0.957
45 H 0.073 0.927
46 H 0.070 0.930
47 H 0.194 0.806
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.700 17.785 -10.055 20.763
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.109 4.109
3 N -0.125 5.125
4 N -0.171 5.171
5 C -0.061 4.061
6 C -0.102 4.102
7 C -0.075 4.075
8 C -0.156 4.156
9 C 0.356 3.644
10 O -0.452 6.452
11 N -0.344 5.344
12 C 0.045 3.955
13 H 0.081 0.919
14 C 0.015 3.985
15 N -0.330 5.330
16 C -0.397 4.397
17 H 0.073 0.927
18 C -0.239 4.239
19 N -0.574 5.574
20 Si 0.790 3.210
21 H -0.206 1.206
22 H -0.215 1.215
23 H -0.205 1.205
24 C 0.045 3.955
25 C -0.163 4.163
26 C -0.102 4.102
27 H 0.103 0.897
28 C -0.194 4.194
29 C 0.013 3.987
30 N -0.080 5.080
31 H 0.124 0.876
32 H 0.116 0.884
33 H 0.128 0.872
34 H 0.209 0.791
35 H 0.206 0.794
36 H 0.256 0.744
37 H 0.052 0.948
38 H 0.041 0.959
39 H 0.061 0.939
40 H 0.071 0.929
41 H 0.023 0.977
42 H 0.100 0.900
43 H 0.064 0.936
44 H 0.062 0.938
45 H 0.092 0.908
46 H 0.089 0.911
47 H 0.210 0.790
Dipole moment (debyes) X Y Z Total
from point charges 3.290 19.017 -9.975 21.725
hybrid contribution -0.928 -1.921 0.687 2.241
sum 2.362 17.096 -9.288 19.599
Atomic orbital electron populations
1.20526 0.79900 1.06319 1.05895 1.25823 0.98574 0.80014 1.06503
1.74111 0.96981 1.24806 1.16595 1.74803 1.11399 1.07493 1.23419
1.23041 0.86128 0.92670 1.04259 1.20549 0.97754 0.90271 1.01606
1.21538 0.95458 0.95845 0.94694 1.19422 0.94497 0.92619 1.09042
1.17886 0.84962 0.85454 0.76141 1.90848 1.22543 1.80331 1.51488
1.45680 1.09643 1.05700 1.73331 1.21315 0.98883 0.78369 0.96926
0.91922 1.21253 0.98034 0.84516 0.94685 1.44200 1.23653 1.00523
1.64605 1.19362 0.89533 0.98794 1.31969 0.92707 1.25683 0.99022
1.00321 0.98922 1.70149 1.23111 1.16263 1.47918 0.85427 0.79715
0.77840 0.77997 1.20563 1.21507 1.20461 1.20718 0.89270 0.95589
0.89883 1.22078 1.01023 0.95536 0.97637 1.21245 0.96565 0.94383
0.98015 0.89745 1.21796 1.01744 1.01841 0.94039 1.21899 1.02868
0.78944 0.94958 1.43799 1.09127 1.07026 1.48051 0.87573 0.88420
0.87199 0.79088 0.79369 0.74445 0.94830 0.95869 0.93921 0.92908
0.97673 0.90021 0.93562 0.93829 0.90773 0.91074 0.78961
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.73 10.40 71.23 0.74 0.01 16
2 C 0.15 3.15 8.14 137.67 1.12 4.27 16
3 N -0.29 -7.68 12.18 -49.62 -0.60 -8.29 16
4 N -0.33 -8.99 12.29 -55.23 -0.68 -9.66 16
5 C 0.19 4.10 7.92 134.11 1.06 5.16 16
6 C -0.08 -1.08 10.09 22.36 0.23 -0.86 16
7 C -0.05 -0.56 9.53 22.55 0.21 -0.35 16
8 C -0.15 -2.58 5.84 -20.33 -0.12 -2.69 16
9 C 0.57 13.57 7.73 86.71 0.67 14.24 16
10 O -0.57 -19.04 15.94 -3.99 -0.06 -19.10 16
11 N -0.69 -14.63 4.32 -445.28 -1.92 -16.55 16
12 C 0.15 4.60 2.06 45.07 0.09 4.69 16
13 H 0.06 2.30 7.58 -2.39 -0.02 2.29 16
14 C 0.14 5.75 6.09 86.36 0.53 6.28 16
15 N -0.61 -29.91 3.00 -699.09 -2.09 -32.01 16
16 C -0.27 -14.88 9.59 84.03 0.81 -14.07 16
17 H 0.06 3.11 7.89 -2.91 -0.02 3.08 16
18 C -0.04 -2.43 4.91 84.86 0.42 -2.01 16
19 N -0.93 -53.92 11.19 21.65 0.24 -53.68 16
20 Si 0.96 45.06 29.59 68.60 2.03 47.09 16
21 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16
22 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16
23 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16
24 C 0.17 7.74 5.31 86.36 0.46 8.20 16
25 C -0.12 -4.08 5.36 30.67 0.16 -3.91 16
26 C -0.08 -2.12 2.27 -10.77 -0.02 -2.15 16
27 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16
28 C -0.14 -2.51 9.02 71.98 0.65 -1.86 16
29 C 0.14 2.50 10.45 83.66 0.87 3.38 16
30 N -0.40 -8.06 2.94 -341.74 -1.00 -9.06 16
31 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16
32 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16
33 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16
34 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16
35 H 0.19 0.61 6.44 -2.91 -0.02 0.59 16
36 H 0.42 5.25 6.33 -92.71 -0.59 4.66 16
37 H 0.03 1.49 7.93 -2.39 -0.02 1.47 16
38 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16
39 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16
40 H 0.05 2.77 6.04 -2.39 -0.01 2.76 16
41 H 0.01 0.24 8.14 -2.38 -0.02 0.23 16
42 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16
43 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16
44 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16
45 H 0.07 0.99 7.35 -2.39 -0.02 0.97 16
46 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
47 H 0.19 3.10 7.56 -2.91 -0.02 3.08 16
Total: -1.00 -78.88 382.37 4.19 -74.69
By element:
Atomic # 1 Polarization: 7.84 SS G_CDS: 0.41 Total: 8.26 kcal
Atomic # 6 Polarization: 10.44 SS G_CDS: 7.88 Total: 18.32 kcal
Atomic # 7 Polarization: -123.19 SS G_CDS: -6.06 Total: -129.25 kcal
Atomic # 8 Polarization: -19.04 SS G_CDS: -0.06 Total: -19.10 kcal
Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal
Total: -78.88 4.19 -74.69 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000967085418.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 145.417 kcal
(2) G-P(sol) polarization free energy of solvation -78.879 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.537 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.687 kcal
(6) G-S(sol) free energy of system = (1) + (5) 70.730 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds