Wall clock time and date at job start Sat Apr 11 2020 06:58:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.52999 * 109.47206 * 2 1
4 4 H 1.08995 * 109.49864 * 55.06888 * 3 2 1
5 5 C 1.53195 * 109.49852 * 295.00201 * 3 2 1
6 6 N 1.46928 * 108.77571 * 185.41448 * 5 3 2
7 7 C 1.34771 * 120.62723 * 233.58686 * 6 5 3
8 8 O 1.21578 * 119.99593 * 183.79561 * 7 6 5
9 9 C 1.47689 * 120.00433 * 3.78845 * 7 6 5
10 10 C 1.40178 * 120.40727 * 129.51923 * 9 7 6
11 11 N 1.31189 * 121.37477 * 179.97438 * 10 9 7
12 12 C 1.32927 * 121.84462 * 359.97438 * 11 10 9
13 13 N 1.36633 * 133.27214 * 180.02562 * 12 11 10
14 14 H 0.97005 * 125.33229 * 0.04453 * 13 12 11
15 15 N 1.39793 * 109.32012 * 180.02562 * 13 12 11
16 16 C 1.30198 * 110.13663 * 359.97438 * 15 13 12
17 17 C 1.41070 * 120.20222 * 0.02562 * 12 11 10
18 18 C 1.39509 * 120.40821 * 309.50402 * 9 7 6
19 19 C 1.46930 * 118.73739 * 53.85917 * 6 5 3
20 20 C 1.53619 * 108.54327 * 306.09511 * 19 6 5
21 21 C 1.53039 * 109.49626 * 175.16478 * 3 2 1
22 22 H 1.09006 * 109.45983 * 61.30942 * 21 3 2
23 23 N 1.46504 * 109.46137 * 301.33755 * 21 3 2
24 24 C 1.36930 * 120.00049 * 155.00291 * 23 21 3
25 25 H 1.07998 * 120.00262 * 359.97438 * 24 23 21
26 26 C 1.38815 * 120.00069 * 180.02562 * 24 23 21
27 27 N 1.31618 * 119.99626 * 359.97438 * 26 24 23
28 28 Si 1.86797 * 120.00109 * 179.97438 * 26 24 23
29 29 H 1.48500 * 109.47224 * 359.97438 * 28 26 24
30 30 H 1.48497 * 109.47115 * 119.99871 * 28 26 24
31 31 H 1.48502 * 109.46739 * 239.99768 * 28 26 24
32 32 H 1.09007 * 109.47077 * 299.99892 * 1 2 3
33 33 H 1.09003 * 109.47366 * 59.99976 * 1 2 3
34 34 H 1.08998 * 109.47567 * 180.02562 * 1 2 3
35 35 H 1.09007 * 109.47077 * 240.00107 * 2 1 3
36 36 H 1.08996 * 109.47543 * 120.00335 * 2 1 3
37 37 H 1.09001 * 109.58445 * 65.62397 * 5 3 2
38 38 H 1.09000 * 109.70205 * 305.26960 * 5 3 2
39 39 H 1.08003 * 119.31421 * 0.02562 * 10 9 7
40 40 H 1.07992 * 126.20943 * 180.02562 * 16 15 13
41 41 H 1.07992 * 121.02348 * 0.03430 * 18 9 7
42 42 H 1.09004 * 109.58032 * 65.93053 * 19 6 5
43 43 H 1.09000 * 109.58535 * 186.34927 * 19 6 5
44 44 H 1.08998 * 109.63547 * 294.86671 * 20 19 6
45 45 H 1.09001 * 109.43170 * 174.72653 * 20 19 6
46 46 H 0.96996 * 119.99699 * 334.99898 * 23 21 3
47 47 H 0.97003 * 120.00201 * 180.02562 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6066 1.9816 0.8423
5 6 1.6350 2.1280 -1.3088
6 7 2.2415 3.4657 -1.3493
7 6 1.4816 4.5579 -1.5637
8 8 2.0035 5.6514 -1.6638
9 6 0.0149 4.4265 -1.6771
10 6 -0.8317 5.2463 -0.9180
11 7 -2.1369 5.1462 -1.0042
12 6 -2.7210 4.2669 -1.8120
13 7 -4.0262 3.9670 -2.0830
14 1 -4.7961 4.3997 -1.6818
15 7 -4.0778 2.9392 -3.0292
16 6 -2.8727 2.5793 -3.3661
17 6 -1.9376 3.4058 -2.6089
18 6 -0.5450 3.4852 -2.5412
19 6 3.6930 3.5893 -1.1578
20 6 4.0741 2.8879 0.1547
21 6 3.5655 1.4448 0.1216
22 1 3.9988 0.9268 -0.7341
23 7 3.9578 0.7606 1.3562
24 6 5.1962 0.1848 1.4561
25 1 5.8835 0.2347 0.6246
26 6 5.5677 -0.4639 2.6257
27 7 4.7298 -0.5251 3.6389
28 14 7.2567 -1.2500 2.7617
29 1 8.0023 -1.0435 1.4942
30 1 8.0040 -0.6266 3.8833
31 1 7.1063 -2.7055 3.0155
32 1 -0.3633 0.5138 0.8900
33 1 -0.3634 0.5138 -0.8900
34 1 -0.3634 -1.0276 0.0005
35 1 1.8933 -0.5138 -0.8900
36 1 1.8933 -0.5138 0.8899
37 1 0.5496 2.2174 -1.3538
38 1 1.9887 1.5406 -2.1561
39 1 -0.4004 5.9762 -0.2488
40 1 -2.6123 1.8092 -4.0770
41 1 0.0792 2.8383 -3.1396
42 1 4.2130 3.1178 -1.9918
43 1 3.9659 4.6432 -1.1033
44 1 3.6220 3.4137 0.9956
45 1 5.1585 2.8891 0.2649
46 1 3.3403 0.7156 2.1029
47 1 4.9894 -0.9782 4.4564
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001037872600.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:58:48
Heat of formation + Delta-G solvation = 77.482484 kcal
Electronic energy + Delta-G solvation = -30443.748099 eV
Core-core repulsion = 26435.176920 eV
Total energy + Delta-G solvation = -4008.571179 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-42.00702 -40.33369 -38.39135 -37.63203 -34.75199 -33.93289 -33.58409 -31.97075
-31.05174 -30.62438 -29.41376 -28.66095 -25.48697 -24.50502 -24.29297 -23.66080
-22.58898 -22.17555 -20.87452 -20.14370 -19.32997 -18.77642 -17.71502 -17.09657
-16.97908 -16.25709 -15.91369 -15.66652 -15.05641 -14.84883 -14.63000 -14.28791
-14.13222 -14.04473 -13.64491 -13.44790 -13.42317 -13.23717 -12.94729 -12.87088
-12.69265 -12.20194 -12.00828 -11.64239 -11.55655 -11.40979 -11.11066 -10.94806
-10.87949 -10.74129 -10.47144 -10.27980 -10.24881 -10.16817 -9.83127 -9.74392
-9.59963 -9.45763 -8.95087 -8.83485 -8.53941 -6.99689 -5.80910 -3.09593
0.33100 0.61095 1.96501 2.00485 2.55780 2.94382 3.38733 3.40123
3.46211 3.48229 3.87608 3.90552 4.16562 4.32455 4.42078 4.54652
4.76023 4.89013 4.96450 5.07704 5.19212 5.21030 5.37998 5.46939
5.48226 5.50801 5.54567 5.59875 5.61390 5.69379 5.76453 5.95611
5.99465 6.03286 6.04617 6.20629 6.30652 6.32558 6.40409 6.46890
6.62758 6.64900 6.79668 6.87243 6.89212 7.01720 7.37177 7.51171
7.66597 8.08281 8.37199 9.48986 10.05767 10.40419 11.41521
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.017113 B = 0.002854 C = 0.002608
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1635.837741 B = 9807.863031 C =10734.441677
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.113 4.113
3 C -0.105 4.105
4 H 0.071 0.929
5 C 0.104 3.896
6 N -0.597 5.597
7 C 0.569 3.431
8 O -0.538 6.538
9 C -0.215 4.215
10 C 0.222 3.778
11 N -0.504 5.504
12 C 0.329 3.671
13 N -0.493 5.493
14 H 0.445 0.555
15 N -0.236 5.236
16 C 0.098 3.902
17 C -0.234 4.234
18 C 0.041 3.959
19 C 0.113 3.887
20 C -0.151 4.151
21 C 0.184 3.816
22 H 0.048 0.952
23 N -0.720 5.720
24 C -0.237 4.237
25 H 0.070 0.930
26 C -0.012 4.012
27 N -0.931 5.931
28 Si 0.904 3.096
29 H -0.280 1.280
30 H -0.292 1.292
31 H -0.292 1.292
32 H 0.050 0.950
33 H 0.045 0.955
34 H 0.051 0.949
35 H 0.058 0.942
36 H 0.085 0.915
37 H 0.085 0.915
38 H 0.072 0.928
39 H 0.175 0.825
40 H 0.206 0.794
41 H 0.149 0.851
42 H 0.067 0.933
43 H 0.087 0.913
44 H 0.060 0.940
45 H 0.076 0.924
46 H 0.384 0.616
47 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.061 6.490 -14.544 21.920
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.151 4.151
3 C -0.125 4.125
4 H 0.089 0.911
5 C -0.019 4.019
6 N -0.328 5.328
7 C 0.356 3.644
8 O -0.416 6.416
9 C -0.223 4.223
10 C 0.053 3.947
11 N -0.219 5.219
12 C 0.088 3.912
13 N -0.211 5.211
14 H 0.291 0.709
15 N -0.049 5.049
16 C -0.102 4.102
17 C -0.244 4.244
18 C 0.012 3.988
19 C -0.010 4.010
20 C -0.192 4.192
21 C 0.073 3.927
22 H 0.066 0.934
23 N -0.361 5.361
24 C -0.369 4.369
25 H 0.088 0.912
26 C -0.208 4.208
27 N -0.580 5.580
28 Si 0.735 3.265
29 H -0.206 1.206
30 H -0.219 1.219
31 H -0.219 1.219
32 H 0.069 0.931
33 H 0.064 0.936
34 H 0.070 0.930
35 H 0.077 0.923
36 H 0.104 0.896
37 H 0.103 0.897
38 H 0.090 0.910
39 H 0.192 0.808
40 H 0.222 0.778
41 H 0.167 0.833
42 H 0.085 0.915
43 H 0.106 0.894
44 H 0.078 0.922
45 H 0.095 0.905
46 H 0.218 0.782
47 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -16.477 7.280 -14.318 23.011
hybrid contribution 1.672 -0.690 0.394 1.851
sum -14.804 6.590 -13.924 21.366
Atomic orbital electron populations
1.21835 0.96927 1.01165 1.00930 1.21467 0.94152 0.95719 1.03743
1.21784 0.98078 0.96211 0.96394 0.91078 1.22202 0.98453 0.82276
0.98976 1.48101 1.08676 1.06463 1.69568 1.17884 0.85472 0.84201
0.76871 1.90797 1.73815 1.26044 1.50938 1.20666 0.95143 1.02112
1.04346 1.22775 0.85865 0.93251 0.92845 1.66796 1.12408 1.21413
1.21237 1.19190 0.86889 0.92437 0.92678 1.45823 1.04696 1.32675
1.37878 0.70889 1.76725 1.22219 1.01708 1.04213 1.25163 0.87918
0.98628 0.98459 1.20402 0.94614 1.03830 1.05511 1.21236 0.92227
0.92462 0.92889 1.21864 0.78144 1.02342 0.98613 1.22765 1.02287
0.98874 0.95253 1.20193 0.90459 0.90726 0.91301 0.93373 1.42408
1.16515 1.64437 1.12699 1.19248 0.91801 1.27163 0.98643 0.91168
1.24723 0.98122 1.01553 0.96435 1.69664 1.35205 1.48378 1.04720
0.86164 0.84053 0.78860 0.77385 1.20576 1.21939 1.21944 0.93097
0.93608 0.93021 0.92292 0.89624 0.89670 0.90954 0.80822 0.77760
0.83303 0.91504 0.89443 0.92153 0.90511 0.78227 0.93575
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.77 9.67 37.15 0.36 -1.41 16
2 C -0.11 -1.60 5.31 -26.73 -0.14 -1.74 16
3 C -0.10 -1.50 1.93 -90.50 -0.17 -1.68 16
4 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16
5 C 0.10 1.17 4.29 -3.71 -0.02 1.16 16
6 N -0.60 -7.62 2.97 -173.67 -0.52 -8.13 16
7 C 0.57 7.61 7.25 -12.40 -0.09 7.52 16
8 O -0.54 -8.88 16.48 5.30 0.09 -8.79 16
9 C -0.22 -2.40 5.02 -104.84 -0.53 -2.93 16
10 C 0.22 2.49 10.87 -17.10 -0.19 2.30 16
11 N -0.50 -5.82 10.37 -12.03 -0.12 -5.94 16
12 C 0.33 3.51 8.47 -156.09 -1.32 2.18 16
13 N -0.49 -4.46 7.33 31.15 0.23 -4.23 16
14 H 0.45 2.97 8.96 -182.82 -1.64 1.33 16
15 N -0.24 -2.11 12.54 31.87 0.40 -1.71 16
16 C 0.10 0.72 12.30 -15.15 -0.19 0.53 16
17 C -0.23 -2.16 6.36 -105.20 -0.67 -2.83 16
18 C 0.04 0.37 7.53 -38.58 -0.29 0.07 16
19 C 0.11 1.55 6.45 -3.49 -0.02 1.53 16
20 C -0.15 -2.49 5.67 -26.39 -0.15 -2.64 16
21 C 0.18 3.24 2.19 -67.89 -0.15 3.09 16
22 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16
23 N -0.72 -16.52 4.33 -53.38 -0.23 -16.75 16
24 C -0.24 -6.17 9.93 -15.06 -0.15 -6.32 16
25 H 0.07 1.79 7.83 -52.49 -0.41 1.37 16
26 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16
27 N -0.93 -27.10 13.06 55.49 0.72 -26.37 16
28 Si 0.90 21.70 29.55 -169.99 -5.02 16.67 16
29 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
30 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
31 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16
33 H 0.04 0.45 6.70 -51.93 -0.35 0.10 16
34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
36 H 0.09 1.53 7.22 -51.93 -0.37 1.15 16
37 H 0.09 0.84 3.26 -51.93 -0.17 0.67 16
38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
39 H 0.17 1.73 8.06 -52.48 -0.42 1.30 16
40 H 0.21 0.65 8.06 -52.49 -0.42 0.23 16
41 H 0.15 0.99 7.11 -52.49 -0.37 0.61 16
42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
43 H 0.09 1.26 7.02 -51.93 -0.36 0.89 16
44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16
45 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16
46 H 0.38 9.55 7.51 -40.82 -0.31 9.24 16
47 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16
LS Contribution 379.95 15.07 5.73 5.73
Total: -1.00 -32.36 379.95 -10.31 -42.67
By element:
Atomic # 1 Polarization: 16.22 SS G_CDS: -7.77 Total: 8.45 kcal
Atomic # 6 Polarization: 2.22 SS G_CDS: -3.81 Total: -1.59 kcal
Atomic # 7 Polarization: -63.62 SS G_CDS: 0.48 Total: -63.13 kcal
Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal
Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -32.36 -10.31 -42.67 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001037872600.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 120.148 kcal
(2) G-P(sol) polarization free energy of solvation -32.358 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.790 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.308 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.665 kcal
(6) G-S(sol) free energy of system = (1) + (5) 77.482 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds