Wall clock time and date at job start Sat Apr 11 2020 06:58:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.52999 * 109.47206 * 2 1
4 4 H 1.08995 * 109.49864 * 55.06888 * 3 2 1
5 5 C 1.53195 * 109.49852 * 295.00201 * 3 2 1
6 6 N 1.46928 * 108.77571 * 185.41448 * 5 3 2
7 7 C 1.34771 * 120.62723 * 233.58686 * 6 5 3
8 8 O 1.21578 * 119.99593 * 183.79561 * 7 6 5
9 9 C 1.47689 * 120.00433 * 3.78845 * 7 6 5
10 10 C 1.40178 * 120.40727 * 129.51923 * 9 7 6
11 11 N 1.31189 * 121.37477 * 179.97438 * 10 9 7
12 12 C 1.32927 * 121.84462 * 359.97438 * 11 10 9
13 13 N 1.36633 * 133.27214 * 180.02562 * 12 11 10
14 14 H 0.97005 * 125.33229 * 0.04453 * 13 12 11
15 15 N 1.39793 * 109.32012 * 180.02562 * 13 12 11
16 16 C 1.30198 * 110.13663 * 359.97438 * 15 13 12
17 17 C 1.41070 * 120.20222 * 0.02562 * 12 11 10
18 18 C 1.39509 * 120.40821 * 309.50402 * 9 7 6
19 19 C 1.46930 * 118.73739 * 53.85917 * 6 5 3
20 20 C 1.53619 * 108.54327 * 306.09511 * 19 6 5
21 21 C 1.53039 * 109.49626 * 175.16478 * 3 2 1
22 22 H 1.09006 * 109.45983 * 61.30942 * 21 3 2
23 23 N 1.46504 * 109.46137 * 301.33755 * 21 3 2
24 24 C 1.36930 * 120.00049 * 155.00291 * 23 21 3
25 25 H 1.07998 * 120.00262 * 359.97438 * 24 23 21
26 26 C 1.38815 * 120.00069 * 180.02562 * 24 23 21
27 27 N 1.31618 * 119.99626 * 359.97438 * 26 24 23
28 28 Si 1.86797 * 120.00109 * 179.97438 * 26 24 23
29 29 H 1.48500 * 109.47224 * 359.97438 * 28 26 24
30 30 H 1.48497 * 109.47115 * 119.99871 * 28 26 24
31 31 H 1.48502 * 109.46739 * 239.99768 * 28 26 24
32 32 H 1.09007 * 109.47077 * 299.99892 * 1 2 3
33 33 H 1.09003 * 109.47366 * 59.99976 * 1 2 3
34 34 H 1.08998 * 109.47567 * 180.02562 * 1 2 3
35 35 H 1.09007 * 109.47077 * 240.00107 * 2 1 3
36 36 H 1.08996 * 109.47543 * 120.00335 * 2 1 3
37 37 H 1.09001 * 109.58445 * 65.62397 * 5 3 2
38 38 H 1.09000 * 109.70205 * 305.26960 * 5 3 2
39 39 H 1.08003 * 119.31421 * 0.02562 * 10 9 7
40 40 H 1.07992 * 126.20943 * 180.02562 * 16 15 13
41 41 H 1.07992 * 121.02348 * 0.03430 * 18 9 7
42 42 H 1.09004 * 109.58032 * 65.93053 * 19 6 5
43 43 H 1.09000 * 109.58535 * 186.34927 * 19 6 5
44 44 H 1.08998 * 109.63547 * 294.86671 * 20 19 6
45 45 H 1.09001 * 109.43170 * 174.72653 * 20 19 6
46 46 H 0.96996 * 119.99699 * 334.99898 * 23 21 3
47 47 H 0.97003 * 120.00201 * 180.02562 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6066 1.9816 0.8423
5 6 1.6350 2.1280 -1.3088
6 7 2.2415 3.4657 -1.3493
7 6 1.4816 4.5579 -1.5637
8 8 2.0035 5.6514 -1.6638
9 6 0.0149 4.4265 -1.6771
10 6 -0.8317 5.2463 -0.9180
11 7 -2.1369 5.1462 -1.0042
12 6 -2.7210 4.2669 -1.8120
13 7 -4.0262 3.9670 -2.0830
14 1 -4.7961 4.3997 -1.6818
15 7 -4.0778 2.9392 -3.0292
16 6 -2.8727 2.5793 -3.3661
17 6 -1.9376 3.4058 -2.6089
18 6 -0.5450 3.4852 -2.5412
19 6 3.6930 3.5893 -1.1578
20 6 4.0741 2.8879 0.1547
21 6 3.5655 1.4448 0.1216
22 1 3.9988 0.9268 -0.7341
23 7 3.9578 0.7606 1.3562
24 6 5.1962 0.1848 1.4561
25 1 5.8835 0.2347 0.6246
26 6 5.5677 -0.4639 2.6257
27 7 4.7298 -0.5251 3.6389
28 14 7.2567 -1.2500 2.7617
29 1 8.0023 -1.0435 1.4942
30 1 8.0040 -0.6266 3.8833
31 1 7.1063 -2.7055 3.0155
32 1 -0.3633 0.5138 0.8900
33 1 -0.3634 0.5138 -0.8900
34 1 -0.3634 -1.0276 0.0005
35 1 1.8933 -0.5138 -0.8900
36 1 1.8933 -0.5138 0.8899
37 1 0.5496 2.2174 -1.3538
38 1 1.9887 1.5406 -2.1561
39 1 -0.4004 5.9762 -0.2488
40 1 -2.6123 1.8092 -4.0770
41 1 0.0792 2.8383 -3.1396
42 1 4.2130 3.1178 -1.9918
43 1 3.9659 4.6432 -1.1033
44 1 3.6220 3.4137 0.9956
45 1 5.1585 2.8891 0.2649
46 1 3.3403 0.7156 2.1029
47 1 4.9894 -0.9782 4.4564
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001037872600.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:58:47
Heat of formation + Delta-G solvation = 56.593479 kcal
Electronic energy + Delta-G solvation = -30444.653914 eV
Core-core repulsion = 26435.176920 eV
Total energy + Delta-G solvation = -4009.476994 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-42.72408 -41.36158 -39.41080 -38.64329 -36.20273 -35.08966 -34.61960 -33.44020
-31.94288 -31.52507 -30.69154 -29.88185 -26.82925 -25.42064 -25.39634 -24.85619
-23.81020 -22.88358 -22.05080 -21.30296 -20.47935 -19.51179 -19.13698 -18.44843
-17.89527 -17.24997 -16.75893 -16.69781 -16.39006 -15.99560 -15.58098 -15.53406
-15.47484 -14.93491 -14.82638 -14.69164 -14.50447 -14.27637 -14.08475 -13.83511
-13.72304 -13.49057 -13.12168 -13.03159 -12.86520 -12.63050 -12.49353 -12.30716
-12.12083 -12.03831 -11.82226 -11.78121 -11.54055 -11.47139 -11.27020 -11.00090
-10.82619 -10.56687 -10.19734 -9.74246 -9.51288 -8.93301 -7.89456 -5.16169
-0.35773 -0.18556 1.31825 1.41026 1.48998 1.50125 1.54951 1.58987
1.95561 2.57936 2.60278 3.14977 3.27663 3.43049 3.44913 3.56244
3.69761 3.80560 3.83166 3.97955 4.08660 4.15397 4.33081 4.36368
4.37286 4.45505 4.52614 4.53115 4.64149 4.76733 4.81710 4.82362
4.87919 4.98054 4.99914 5.09809 5.15615 5.18176 5.32856 5.37646
5.44999 5.53646 5.55222 5.62631 5.69279 6.00460 6.24863 6.32400
6.35789 6.77799 7.04830 7.39255 8.16450 8.38349 9.34203
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.017113 B = 0.002854 C = 0.002608
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1635.837741 B = 9807.863031 C =10734.441677
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.107 4.107
3 C -0.095 4.095
4 H 0.050 0.950
5 C 0.111 3.889
6 N -0.595 5.595
7 C 0.574 3.426
8 O -0.574 6.574
9 C -0.230 4.230
10 C 0.213 3.787
11 N -0.523 5.523
12 C 0.311 3.689
13 N -0.494 5.494
14 H 0.451 0.549
15 N -0.256 5.256
16 C 0.116 3.884
17 C -0.238 4.238
18 C 0.057 3.943
19 C 0.122 3.878
20 C -0.141 4.141
21 C 0.179 3.821
22 H 0.054 0.946
23 N -0.731 5.731
24 C -0.226 4.226
25 H 0.078 0.922
26 C -0.077 4.077
27 N -0.970 5.970
28 Si 0.964 3.036
29 H -0.264 1.264
30 H -0.301 1.301
31 H -0.297 1.297
32 H 0.037 0.963
33 H 0.075 0.925
34 H 0.058 0.942
35 H 0.072 0.928
36 H 0.040 0.960
37 H 0.106 0.894
38 H 0.104 0.896
39 H 0.174 0.826
40 H 0.250 0.750
41 H 0.183 0.817
42 H 0.090 0.910
43 H 0.080 0.920
44 H 0.038 0.962
45 H 0.060 0.940
46 H 0.370 0.630
47 H 0.247 0.753
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.881 5.536 -17.906 24.566
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.145 4.145
3 C -0.116 4.116
4 H 0.069 0.931
5 C -0.011 4.011
6 N -0.326 5.326
7 C 0.362 3.638
8 O -0.455 6.455
9 C -0.238 4.238
10 C 0.044 3.956
11 N -0.238 5.238
12 C 0.069 3.931
13 N -0.212 5.212
14 H 0.298 0.702
15 N -0.068 5.068
16 C -0.083 4.083
17 C -0.248 4.248
18 C 0.029 3.971
19 C 0.000 4.000
20 C -0.182 4.182
21 C 0.070 3.930
22 H 0.072 0.928
23 N -0.369 5.369
24 C -0.358 4.358
25 H 0.096 0.904
26 C -0.269 4.269
27 N -0.622 5.622
28 Si 0.794 3.206
29 H -0.189 1.189
30 H -0.228 1.228
31 H -0.224 1.224
32 H 0.057 0.943
33 H 0.094 0.906
34 H 0.077 0.923
35 H 0.091 0.909
36 H 0.059 0.941
37 H 0.124 0.876
38 H 0.122 0.878
39 H 0.191 0.809
40 H 0.266 0.734
41 H 0.200 0.800
42 H 0.108 0.892
43 H 0.099 0.901
44 H 0.057 0.943
45 H 0.079 0.921
46 H 0.202 0.798
47 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -17.322 6.337 -17.736 25.588
hybrid contribution 1.854 -0.352 1.389 2.343
sum -15.469 5.985 -16.347 23.288
Atomic orbital electron populations
1.21776 0.94650 1.01957 1.01777 1.21354 0.96097 0.94862 1.02177
1.21651 0.95286 0.96815 0.97806 0.93101 1.22299 0.99687 0.81329
0.97806 1.48111 1.08186 1.07079 1.69224 1.18136 0.86263 0.83524
0.75859 1.90779 1.74681 1.27413 1.52606 1.20455 0.93525 1.03751
1.06071 1.22829 0.86033 0.93544 0.93221 1.66766 1.12486 1.22356
1.22210 1.19512 0.87847 0.92740 0.92952 1.45942 1.04523 1.32804
1.37960 0.70205 1.76753 1.23311 1.02077 1.04695 1.25907 0.86472
0.98200 0.97704 1.20628 0.94775 1.03875 1.05488 1.21511 0.92443
0.91513 0.91638 1.21694 0.79229 1.01689 0.97428 1.22565 1.00988
0.98229 0.96418 1.20449 0.92980 0.90470 0.89057 0.92811 1.42605
1.15438 1.64792 1.14114 1.19622 0.92672 1.25232 0.98254 0.90450
1.25447 1.01389 1.03409 0.96651 1.69818 1.36968 1.50246 1.05153
0.85198 0.80477 0.77404 0.77478 1.18851 1.22838 1.22442 0.94346
0.90592 0.92329 0.90893 0.94116 0.87595 0.87848 0.80909 0.73416
0.80025 0.89183 0.90141 0.94311 0.92129 0.79815 0.94386
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.99 9.67 71.98 0.70 -2.29 16
2 C -0.11 -2.86 5.31 30.59 0.16 -2.69 16
3 C -0.10 -2.61 1.93 -10.72 -0.02 -2.63 16
4 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16
5 C 0.11 2.10 4.29 86.36 0.37 2.47 16
6 N -0.60 -13.79 2.97 -821.63 -2.44 -16.23 16
7 C 0.57 14.41 7.25 86.74 0.63 15.04 16
8 O -0.57 -18.63 16.48 -3.96 -0.07 -18.69 16
9 C -0.23 -4.67 5.02 -20.00 -0.10 -4.77 16
10 C 0.21 4.66 10.87 85.26 0.93 5.58 16
11 N -0.52 -11.71 10.37 -191.96 -1.99 -13.70 16
12 C 0.31 6.07 8.47 134.18 1.14 7.20 16
13 N -0.49 -8.07 7.33 -55.36 -0.41 -8.48 16
14 H 0.45 5.60 8.96 -213.51 -1.91 3.69 16
15 N -0.26 -3.82 12.54 -53.08 -0.67 -4.48 16
16 C 0.12 1.18 12.30 86.94 1.07 2.25 16
17 C -0.24 -3.54 6.36 -20.24 -0.13 -3.66 16
18 C 0.06 0.80 7.53 22.92 0.17 0.97 16
19 C 0.12 3.17 6.45 86.51 0.56 3.72 16
20 C -0.14 -4.65 5.67 30.82 0.17 -4.47 16
21 C 0.18 6.19 2.19 45.02 0.10 6.29 16
22 H 0.05 1.83 8.08 -2.38 -0.02 1.81 16
23 N -0.73 -34.15 4.33 -322.80 -1.40 -35.55 16
24 C -0.23 -11.80 9.93 84.04 0.83 -10.97 16
25 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16
26 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16
27 N -0.97 -58.27 13.06 21.65 0.28 -57.98 16
28 Si 0.96 45.16 29.55 68.60 2.03 47.19 16
29 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16
30 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16
31 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16
32 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16
33 H 0.08 1.12 6.70 -2.39 -0.02 1.10 16
34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16
35 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16
36 H 0.04 1.47 7.22 -2.39 -0.02 1.45 16
37 H 0.11 1.62 3.26 -2.39 -0.01 1.61 16
38 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16
39 H 0.17 3.56 8.06 -2.91 -0.02 3.54 16
40 H 0.25 0.01 8.06 -2.91 -0.02 -0.01 16
41 H 0.18 1.30 7.11 -2.91 -0.02 1.27 16
42 H 0.09 1.96 8.14 -2.38 -0.02 1.95 16
43 H 0.08 2.25 7.02 -2.39 -0.02 2.24 16
44 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16
45 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16
46 H 0.37 19.19 7.51 -92.71 -0.70 18.49 16
47 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16
Total: -1.00 -73.25 379.95 0.81 -72.44
By element:
Atomic # 1 Polarization: 28.86 SS G_CDS: -1.58 Total: 27.28 kcal
Atomic # 6 Polarization: 1.16 SS G_CDS: 7.05 Total: 8.20 kcal
Atomic # 7 Polarization: -129.81 SS G_CDS: -6.61 Total: -136.43 kcal
Atomic # 8 Polarization: -18.63 SS G_CDS: -0.07 Total: -18.69 kcal
Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal
Total: -73.25 0.81 -72.44 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001037872600.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 129.036 kcal
(2) G-P(sol) polarization free energy of solvation -73.253 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.783 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.810 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.443 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.593 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds