Wall clock time and date at job start Sat Apr 11 2020 06:56:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.50701 * 109.47212 * 2 1
4 4 N 1.30280 * 124.97191 * 305.02547 * 3 2 1
5 5 C 1.34656 * 109.66505 * 179.97438 * 4 3 2
6 6 C 1.40826 * 107.26735 * 359.97438 * 5 4 3
7 7 N 1.32105 * 120.46647 * 180.02562 * 6 5 4
8 8 C 1.31729 * 121.95102 * 359.95190 * 7 6 5
9 9 C 1.38337 * 121.54363 * 0.05159 * 8 7 6
10 10 C 1.39634 * 119.37856 * 359.97419 * 9 8 7
11 11 C 1.47763 * 121.07637 * 180.02562 * 10 9 8
12 12 O 1.21557 * 120.00035 * 179.97438 * 11 10 9
13 13 N 1.34781 * 120.00026 * 359.97438 * 11 10 9
14 14 C 1.46493 * 119.99903 * 180.02562 * 13 11 10
15 15 H 1.08999 * 110.89372 * 31.11844 * 14 13 11
16 16 C 1.54910 * 111.00486 * 267.18994 * 14 13 11
17 17 N 1.47421 * 104.83412 * 204.92140 * 16 14 13
18 18 C 1.36935 * 125.64850 * 204.15350 * 17 16 14
19 19 H 1.08004 * 120.00296 * 179.97438 * 18 17 16
20 20 C 1.38813 * 119.99988 * 359.97139 * 18 17 16
21 21 N 1.31620 * 119.99937 * 0.02562 * 20 18 17
22 22 Si 1.86798 * 120.00137 * 179.97438 * 20 18 17
23 23 H 1.48509 * 109.47216 * 0.02562 * 22 20 18
24 24 H 1.48502 * 109.47040 * 119.99717 * 22 20 18
25 25 H 1.48495 * 109.47831 * 240.00120 * 22 20 18
26 26 C 1.47024 * 108.70618 * 24.12553 * 17 16 14
27 27 C 1.54324 * 107.26737 * 358.94783 * 26 17 16
28 28 H 1.08998 * 110.87326 * 96.23832 * 27 26 17
29 29 C 1.53000 * 110.71683 * 219.44214 * 27 26 17
30 30 N 1.35987 * 124.96744 * 124.72131 * 3 2 1
31 31 H 0.97000 * 126.36087 * 359.97438 * 30 3 2
32 32 H 1.08996 * 109.47853 * 179.97438 * 1 2 3
33 33 H 1.09002 * 109.47153 * 299.99998 * 1 2 3
34 34 H 1.08998 * 109.47533 * 59.99628 * 1 2 3
35 35 H 1.09002 * 109.47153 * 240.00002 * 2 1 3
36 36 H 1.09001 * 109.46832 * 120.00193 * 2 1 3
37 37 H 1.07996 * 119.22811 * 180.02562 * 8 7 6
38 38 H 1.08001 * 120.30884 * 179.97438 * 9 8 7
39 39 H 0.97005 * 119.99274 * 359.97438 * 13 11 10
40 40 H 1.09004 * 110.36476 * 323.75951 * 16 14 13
41 41 H 1.08997 * 110.36326 * 86.07974 * 16 14 13
42 42 H 0.97008 * 119.99785 * 180.02562 * 21 20 18
43 43 H 1.08997 * 109.88664 * 239.52908 * 26 17 16
44 44 H 1.08997 * 110.00810 * 118.42868 * 26 17 16
45 45 H 1.08997 * 109.47337 * 173.52195 * 29 27 26
46 46 H 1.09007 * 109.46930 * 293.52039 * 29 27 26
47 47 H 1.09003 * 109.47503 * 53.51765 * 29 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 1.7036 2.3291 -0.8742
5 6 2.3285 3.4857 -0.5828
6 6 3.1053 3.2622 0.5703
7 7 3.8325 4.2364 1.0873
8 6 3.8635 5.4409 0.5551
9 6 3.1322 5.7507 -0.5776
10 6 2.3420 4.7657 -1.1734
11 6 1.5462 5.0553 -2.3843
12 8 0.8654 4.1829 -2.8873
13 7 1.5753 6.2869 -2.9312
14 6 0.7859 6.5742 -4.1313
15 1 -0.1230 5.9729 -4.1519
16 6 1.6263 6.3558 -5.4142
17 7 0.9946 7.2169 -6.4304
18 6 1.0641 7.0347 -7.7858
19 1 0.5639 7.7242 -8.4497
20 6 1.7774 5.9637 -8.3064
21 7 2.3866 5.1231 -7.4973
22 14 1.8716 5.7147 -10.1553
23 1 1.1070 6.7886 -10.8391
24 1 3.2907 5.7646 -10.5898
25 1 1.2924 4.3933 -10.5071
26 6 0.2771 8.3035 -5.7476
27 6 0.4544 8.0868 -4.2300
28 1 1.2781 8.6880 -3.8454
29 6 -0.8418 8.4066 -3.4826
30 7 2.8906 1.9440 0.9159
31 1 3.2803 1.4768 1.6715
32 1 -0.3635 -1.0276 -0.0005
33 1 -0.3633 0.5138 0.8900
34 1 -0.3634 0.5139 -0.8899
35 1 1.8933 -0.5138 -0.8900
36 1 1.8933 -0.5139 0.8900
37 1 4.4738 6.2046 1.0140
38 1 3.1721 6.7452 -0.9970
39 1 2.1183 6.9831 -2.5295
40 1 2.6594 6.6609 -5.2474
41 1 1.5835 5.3112 -5.7224
42 1 2.8854 4.3749 -7.8611
43 1 -0.7812 8.2687 -6.0060
44 1 0.6975 9.2669 -6.0360
45 1 -0.7311 8.1383 -2.4319
46 1 -1.0551 9.4725 -3.5648
47 1 -1.6627 7.8372 -3.9185
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001080183071.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:56:58
Heat of formation + Delta-G solvation = 77.618560 kcal
Electronic energy + Delta-G solvation = -29862.794144 eV
Core-core repulsion = 25854.228865 eV
Total energy + Delta-G solvation = -4008.565279 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-42.59993 -39.60759 -38.43134 -37.35115 -34.01749 -33.76310 -33.71900 -32.67756
-31.36867 -30.31470 -29.33895 -27.75585 -25.66023 -25.30361 -24.01058 -23.41669
-22.82623 -20.93114 -20.83610 -20.06372 -19.71355 -18.28639 -17.74809 -17.12936
-16.85607 -16.07833 -15.77040 -15.23420 -14.97038 -14.77339 -14.56913 -14.24589
-14.16252 -13.89903 -13.63490 -13.17135 -12.96562 -12.91019 -12.63679 -12.43302
-12.30312 -12.20130 -11.88382 -11.66276 -11.46200 -11.22107 -11.16609 -11.03975
-10.94954 -10.76322 -10.58982 -10.30055 -9.92529 -9.85748 -9.72788 -9.66879
-9.15867 -9.06079 -8.60393 -8.56772 -8.35776 -6.78643 -5.57933 -3.01835
0.30559 0.98910 2.26392 2.59411 3.13089 3.37376 3.44822 3.49455
3.52662 3.76160 3.90521 4.20495 4.40544 4.53790 4.62115 4.67714
4.79688 4.89631 4.94365 5.17123 5.20539 5.35109 5.35763 5.49268
5.53075 5.55625 5.58672 5.68375 5.77375 5.79112 5.87292 6.01323
6.07849 6.08070 6.19959 6.30208 6.37665 6.42497 6.52761 6.70556
6.83842 6.88070 6.99670 7.51235 7.61990 7.67201 7.67922 7.88538
7.98532 8.43287 8.63780 9.26669 9.88126 10.51298 11.44764
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.011505 B = 0.002975 C = 0.002668
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2433.168267 B = 9408.318221 C =10492.465314
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.043 4.043
3 C 0.295 3.705
4 N -0.449 5.449
5 C 0.058 3.942
6 C 0.232 3.768
7 N -0.472 5.472
8 C 0.130 3.870
9 C -0.152 4.152
10 C -0.025 4.025
11 C 0.549 3.451
12 O -0.496 6.496
13 N -0.708 5.708
14 C 0.121 3.879
15 H 0.094 0.906
16 C 0.149 3.851
17 N -0.603 5.603
18 C -0.226 4.226
19 H 0.079 0.921
20 C -0.010 4.010
21 N -0.917 5.917
22 Si 0.914 3.086
23 H -0.280 1.280
24 H -0.291 1.291
25 H -0.290 1.290
26 C 0.142 3.858
27 C -0.111 4.111
28 H 0.073 0.927
29 C -0.137 4.137
30 N -0.587 5.587
31 H 0.426 0.574
32 H 0.067 0.933
33 H 0.054 0.946
34 H 0.076 0.924
35 H 0.102 0.898
36 H 0.083 0.917
37 H 0.172 0.828
38 H 0.149 0.851
39 H 0.392 0.608
40 H 0.013 0.987
41 H 0.112 0.888
42 H 0.252 0.748
43 H 0.027 0.973
44 H 0.023 0.977
45 H 0.050 0.950
46 H 0.052 0.948
47 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.822 -3.263 22.169 22.423
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.082 4.082
3 C 0.028 3.972
4 N -0.168 5.168
5 C -0.066 4.066
6 C -0.005 4.005
7 N -0.185 5.185
8 C -0.036 4.036
9 C -0.175 4.175
10 C -0.038 4.038
11 C 0.333 3.667
12 O -0.369 6.369
13 N -0.359 5.359
14 C 0.016 3.984
15 H 0.112 0.888
16 C 0.023 3.977
17 N -0.329 5.329
18 C -0.354 4.354
19 H 0.097 0.903
20 C -0.206 4.206
21 N -0.565 5.565
22 Si 0.745 3.255
23 H -0.205 1.205
24 H -0.218 1.218
25 H -0.217 1.217
26 C 0.015 3.985
27 C -0.131 4.131
28 H 0.092 0.908
29 C -0.195 4.195
30 N -0.202 5.202
31 H 0.266 0.734
32 H 0.086 0.914
33 H 0.074 0.926
34 H 0.095 0.905
35 H 0.120 0.880
36 H 0.102 0.898
37 H 0.189 0.811
38 H 0.167 0.833
39 H 0.227 0.773
40 H 0.031 0.969
41 H 0.130 0.870
42 H 0.063 0.937
43 H 0.045 0.955
44 H 0.041 0.959
45 H 0.069 0.931
46 H 0.071 0.929
47 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 0.284 -4.348 21.611 22.046
hybrid contribution 0.920 0.444 -0.338 1.076
sum 1.204 -3.904 21.273 21.662
Atomic orbital electron populations
1.21716 0.92553 1.02498 1.03692 1.20197 0.97854 0.85817 1.04304
1.24018 0.89873 0.97637 0.85700 1.70329 1.24014 0.98300 1.24152
1.19251 0.98402 0.93773 0.95209 1.18883 0.99253 0.86999 0.95408
1.66171 1.19618 0.99889 1.32854 1.22458 0.96819 0.91514 0.92778
1.22193 0.97745 1.00032 0.97540 1.19839 0.97349 0.90955 0.95680
1.17858 0.82422 0.83124 0.83296 1.90875 1.39935 1.44684 1.61389
1.45764 1.48821 1.11687 1.29652 1.22728 0.95800 0.94663 0.85217
0.88782 1.22230 0.91832 1.00004 0.83666 1.44394 1.59377 1.27047
1.02105 1.19101 1.27189 1.08665 0.80448 0.90301 1.24823 0.99939
0.97755 0.98053 1.69821 1.37842 1.16816 1.31992 0.86010 0.77240
0.77640 0.84657 1.20520 1.21816 1.21697 1.21332 0.95875 0.92331
0.88936 1.22435 0.97643 0.95907 0.97101 0.90827 1.21745 0.97278
1.00946 0.99526 1.42779 1.41422 1.08420 1.27553 0.73409 0.91401
0.92649 0.90474 0.87964 0.89802 0.81115 0.83348 0.77346 0.96878
0.87049 0.93726 0.95486 0.95894 0.93112 0.92894 0.92453
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.18 9.85 37.16 0.37 -0.81 16
2 C -0.04 -0.32 6.56 -27.88 -0.18 -0.50 16
3 C 0.29 3.48 7.37 -154.73 -1.14 2.34 16
4 N -0.45 -7.48 10.57 -8.07 -0.09 -7.57 16
5 C 0.06 0.94 6.85 -84.61 -0.58 0.36 16
6 C 0.23 3.15 8.46 -155.64 -1.32 1.84 16
7 N -0.47 -5.85 10.35 -12.30 -0.13 -5.98 16
8 C 0.13 1.31 11.14 -17.56 -0.20 1.12 16
9 C -0.15 -1.69 9.60 -39.02 -0.37 -2.07 16
10 C -0.03 -0.40 5.93 -104.45 -0.62 -1.02 16
11 C 0.55 10.29 7.79 -12.36 -0.10 10.19 16
12 O -0.50 -11.56 15.83 5.32 0.08 -11.48 16
13 N -0.71 -11.79 5.16 -52.70 -0.27 -12.06 16
14 C 0.12 2.40 2.87 -65.78 -0.19 2.22 16
15 H 0.09 2.09 7.44 -51.93 -0.39 1.70 16
16 C 0.15 3.76 5.58 -2.53 -0.01 3.74 16
17 N -0.60 -15.79 3.39 -170.07 -0.58 -16.36 16
18 C -0.23 -6.44 10.27 -15.06 -0.15 -6.59 16
19 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16
20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16
21 N -0.92 -27.93 10.09 55.49 0.56 -27.37 16
22 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16
23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16
25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16
26 C 0.14 2.95 6.84 -3.06 -0.02 2.93 16
27 C -0.11 -1.88 3.20 -88.78 -0.28 -2.16 16
28 H 0.07 1.11 8.00 -51.93 -0.42 0.70 16
29 C -0.14 -1.91 9.16 37.16 0.34 -1.57 16
30 N -0.59 -6.12 6.23 -9.43 -0.06 -6.18 16
31 H 0.43 2.79 8.96 -40.82 -0.37 2.42 16
32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16
33 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16
34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16
35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16
36 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16
37 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16
38 H 0.15 1.16 6.53 -52.49 -0.34 0.82 16
39 H 0.39 5.03 6.70 -40.82 -0.27 4.76 16
40 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16
41 H 0.11 3.34 5.87 -51.93 -0.30 3.03 16
42 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16
43 H 0.03 0.56 7.76 -51.93 -0.40 0.16 16
44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
47 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16
LS Contribution 386.27 15.07 5.82 5.82
Total: -1.00 -38.41 386.27 -10.92 -49.33
By element:
Atomic # 1 Polarization: 11.24 SS G_CDS: -6.68 Total: 4.56 kcal
Atomic # 6 Polarization: 14.19 SS G_CDS: -4.56 Total: 9.64 kcal
Atomic # 7 Polarization: -74.96 SS G_CDS: -0.56 Total: -75.52 kcal
Atomic # 8 Polarization: -11.56 SS G_CDS: 0.08 Total: -11.48 kcal
Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -38.41 -10.92 -49.33 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001080183071.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 126.948 kcal
(2) G-P(sol) polarization free energy of solvation -38.407 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.541 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.922 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.329 kcal
(6) G-S(sol) free energy of system = (1) + (5) 77.619 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds