Wall clock time and date at job start Sat Apr 11 2020 06:59:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17395 * 1
3 3 C 1.47198 * 179.97438 * 2 1
4 4 N 1.46500 * 109.47243 * 72.06501 * 3 2 1
5 5 C 1.36941 * 120.00001 * 263.94373 * 4 3 2
6 6 H 1.07993 * 120.00118 * 142.63202 * 5 4 3
7 7 C 1.38810 * 119.99497 * 322.62524 * 5 4 3
8 8 N 1.31624 * 119.99528 * 157.67873 * 7 5 4
9 9 Si 1.86802 * 120.00504 * 337.67592 * 7 5 4
10 10 H 1.48503 * 109.46881 * 95.72070 * 9 7 5
11 11 H 1.48496 * 109.47049 * 215.72122 * 9 7 5
12 12 H 1.48500 * 109.46976 * 335.72270 * 9 7 5
13 13 C 1.46502 * 120.00359 * 83.93710 * 4 3 2
14 14 C 1.53004 * 109.46908 * 90.00137 * 13 4 3
15 15 C 1.50702 * 109.46890 * 180.02562 * 14 13 4
16 16 O 1.21280 * 119.99882 * 359.97438 * 15 14 13
17 17 N 1.34782 * 119.99712 * 179.97438 * 15 14 13
18 18 C 1.47081 * 120.87756 * 179.97438 * 17 15 14
19 19 C 1.53237 * 108.51917 * 231.20622 * 18 17 15
20 20 N 1.46903 * 109.34249 * 306.17295 * 19 18 17
21 21 C 1.38400 * 111.00037 * 187.25262 * 20 19 18
22 22 N 1.32497 * 119.22208 * 0.23061 * 21 20 19
23 23 C 1.32272 * 120.74330 * 180.28638 * 22 21 20
24 24 C 1.38610 * 119.19559 * 359.48730 * 23 22 21
25 25 C 1.38603 * 118.55798 * 0.25513 * 24 23 22
26 26 N 1.32270 * 119.19674 * 359.97438 * 25 24 23
27 27 C 1.46903 * 111.26689 * 63.10253 * 20 19 18
28 28 C 1.47070 * 120.88002 * 0.02562 * 17 15 14
29 29 H 4.40641 * 5.51426 * 180.02562 * 4 1 2
30 30 H 1.08997 * 109.47575 * 312.06164 * 3 2 1
31 31 H 1.09005 * 109.47163 * 192.06293 * 3 2 1
32 32 H 0.96999 * 119.99863 * 180.02562 * 8 7 5
33 33 H 1.09006 * 109.46828 * 330.00487 * 13 4 3
34 34 H 1.08995 * 109.47585 * 210.00181 * 13 4 3
35 35 H 1.08996 * 109.46961 * 59.99999 * 14 13 4
36 36 H 1.09008 * 109.47250 * 300.00139 * 14 13 4
37 37 H 1.08992 * 109.62682 * 111.49697 * 18 17 15
38 38 H 1.09000 * 109.63225 * 350.91390 * 18 17 15
39 39 H 1.08995 * 109.49526 * 186.21224 * 19 18 17
40 40 H 1.09002 * 109.51701 * 66.14112 * 19 18 17
41 41 H 1.07998 * 120.40004 * 179.76537 * 23 22 21
42 42 H 1.08002 * 120.71659 * 180.27709 * 24 23 22
43 43 H 1.07996 * 120.40026 * 180.02562 * 25 24 23
44 44 H 1.08994 * 109.49358 * 56.85877 * 27 20 19
45 45 H 1.09005 * 109.48996 * 176.93900 * 27 20 19
46 46 H 1.09004 * 109.63054 * 248.49998 * 28 17 15
47 47 H 1.08997 * 109.63473 * 8.88747 * 28 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6459 0.0007 0.0000
4 7 3.1345 -0.4244 -1.3141
5 6 3.4813 -1.7322 -1.5254
6 1 3.2635 -2.2023 -2.4730
7 6 4.1129 -2.4536 -0.5217
8 7 4.0584 -3.7687 -0.5224
9 14 5.0404 -1.5580 0.8301
10 1 4.1568 -1.3953 2.0125
11 1 6.2397 -2.3455 1.2130
12 1 5.4618 -0.2213 0.3394
13 6 3.2519 0.5495 -2.4022
14 6 4.6451 1.1813 -2.3730
15 6 4.7657 2.1835 -3.4919
16 8 3.8297 2.3734 -4.2394
17 7 5.9138 2.8689 -3.6618
18 6 6.0528 3.8511 -4.7477
19 6 7.3351 3.5379 -5.5261
20 7 8.4683 3.4786 -4.5932
21 6 9.6666 3.3587 -5.2754
22 7 9.6557 3.3188 -6.5997
23 6 10.7827 3.1991 -7.2819
24 6 11.9843 3.1259 -6.5949
25 6 11.9599 3.1757 -5.2099
26 7 10.7978 3.2915 -4.5889
27 6 8.3034 2.3878 -3.6231
28 6 7.0610 2.6535 -2.7671
29 1 -1.0500 0.0001 -0.0002
30 1 3.0096 -0.6876 0.7629
31 1 3.0088 1.0058 0.2148
32 1 4.4995 -4.2728 0.1791
33 1 2.4978 1.3266 -2.2772
34 1 3.1009 0.0470 -3.3575
35 1 5.3991 0.4042 -2.4979
36 1 4.7962 1.6839 -1.4175
37 1 6.1155 4.8549 -4.3276
38 1 5.1937 3.7834 -5.4150
39 1 7.5125 4.3197 -6.2646
40 1 7.2292 2.5778 -6.0311
41 1 10.7670 3.1634 -8.3611
42 1 12.9193 3.0323 -7.1272
43 1 12.8786 3.1215 -4.6448
44 1 8.1836 1.4436 -4.1543
45 1 9.1830 2.3356 -2.9815
46 1 7.2208 3.5420 -2.1562
47 1 6.8669 1.7961 -2.1226
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000491255014.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:59:38
Heat of formation + Delta-G solvation = 131.397944 kcal
Electronic energy + Delta-G solvation = -29512.568744 eV
Core-core repulsion = 25506.335514 eV
Total energy + Delta-G solvation = -4006.233229 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-41.60574 -40.05117 -38.15332 -36.40531 -34.92200 -34.13183 -32.49973 -32.20090
-31.47407 -31.36340 -29.85618 -27.58562 -26.33295 -25.41293 -24.58669 -23.64794
-23.26455 -21.63938 -20.50769 -19.05224 -18.20159 -18.01889 -17.79747 -16.88377
-16.41926 -16.01094 -15.82812 -15.72259 -15.55116 -15.28052 -14.91160 -14.81623
-14.36925 -14.21825 -13.88948 -13.72658 -13.46961 -13.18286 -12.88403 -12.63375
-12.56333 -12.10113 -11.86244 -11.72265 -11.56357 -11.38941 -11.36123 -11.30932
-11.17808 -10.77954 -10.60421 -10.56383 -10.29916 -9.88799 -9.57510 -9.51379
-9.42379 -9.21295 -8.89136 -8.63990 -8.59217 -7.06328 -6.08072 -3.51969
0.57919 0.75351 2.67211 2.86642 3.07289 3.21370 3.35197 3.38019
3.41022 3.55860 3.65691 3.77142 4.21700 4.29442 4.41319 4.55750
4.62203 4.76130 4.77675 4.83895 4.90832 5.00432 5.09266 5.13682
5.25503 5.30050 5.37881 5.43324 5.47956 5.59097 5.63409 5.69436
5.78758 5.83054 5.85998 6.14727 6.22146 6.24568 6.37150 6.39207
6.48102 6.57716 6.71003 6.86532 6.89864 7.43700 7.78411 7.93745
8.29154 8.37696 8.43800 8.86228 9.59665 9.98596 11.07176
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.014786 B = 0.002624 C = 0.002374
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1893.205122 B =10667.313675 C =11789.444601
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.254 4.254
2 C -0.163 4.163
3 C 0.226 3.774
4 N -0.595 5.595
5 C -0.273 4.273
6 H 0.081 0.919
7 C 0.037 3.963
8 N -0.893 5.893
9 Si 0.870 3.130
10 H -0.284 1.284
11 H -0.297 1.297
12 H -0.264 1.264
13 C 0.169 3.831
14 C -0.161 4.161
15 C 0.523 3.477
16 O -0.540 6.540
17 N -0.625 5.625
18 C 0.114 3.886
19 C 0.057 3.943
20 N -0.460 5.460
21 C 0.496 3.504
22 N -0.552 5.552
23 C 0.174 3.826
24 C -0.265 4.265
25 C 0.175 3.825
26 N -0.531 5.531
27 C 0.052 3.948
28 C 0.112 3.888
29 H 0.206 0.794
30 H 0.082 0.918
31 H 0.063 0.937
32 H 0.265 0.735
33 H 0.049 0.951
34 H 0.062 0.938
35 H 0.098 0.902
36 H 0.084 0.916
37 H 0.072 0.928
38 H 0.103 0.897
39 H 0.099 0.901
40 H 0.059 0.941
41 H 0.168 0.832
42 H 0.147 0.853
43 H 0.170 0.830
44 H 0.054 0.946
45 H 0.107 0.893
46 H 0.080 0.920
47 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.911 16.646 -9.093 24.758
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.273 4.273
2 C -0.166 4.166
3 C 0.101 3.899
4 N -0.315 5.315
5 C -0.401 4.401
6 H 0.099 0.901
7 C -0.164 4.164
8 N -0.533 5.533
9 Si 0.699 3.301
10 H -0.211 1.211
11 H -0.225 1.225
12 H -0.188 1.188
13 C 0.042 3.958
14 C -0.203 4.203
15 C 0.312 3.688
16 O -0.416 6.416
17 N -0.361 5.361
18 C -0.009 4.009
19 C -0.070 4.070
20 N -0.179 5.179
21 C 0.140 3.860
22 N -0.272 5.272
23 C 0.007 3.993
24 C -0.289 4.289
25 C 0.007 3.993
26 N -0.249 5.249
27 C -0.075 4.075
28 C -0.012 4.012
29 H 0.223 0.777
30 H 0.099 0.901
31 H 0.081 0.919
32 H 0.075 0.925
33 H 0.068 0.932
34 H 0.081 0.919
35 H 0.116 0.884
36 H 0.103 0.897
37 H 0.091 0.909
38 H 0.121 0.879
39 H 0.117 0.883
40 H 0.077 0.923
41 H 0.185 0.815
42 H 0.164 0.836
43 H 0.187 0.813
44 H 0.072 0.928
45 H 0.125 0.875
46 H 0.098 0.902
47 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges 14.518 17.069 -8.629 24.012
hybrid contribution 1.468 -0.300 -0.035 1.499
sum 15.986 16.769 -8.664 24.735
Atomic orbital electron populations
1.24677 0.95705 1.04000 1.02943 1.24919 0.95912 0.97591 0.98158
1.18500 0.82648 0.98717 0.90060 1.44140 1.72756 1.06818 1.07755
1.18824 1.33648 0.84790 1.02860 0.90130 1.25503 0.97719 0.95058
0.98118 1.69882 1.43579 1.05520 1.34358 0.87020 0.80239 0.80547
0.82253 1.21148 1.22504 1.18813 1.20668 0.91287 0.91425 0.92425
1.22494 1.04776 0.97198 0.95869 1.21231 0.81018 0.80611 0.85907
1.90658 1.37866 1.66369 1.46747 1.48358 1.14112 1.41727 1.31920
1.21707 0.97157 0.92220 0.89853 1.22483 0.87716 1.03367 0.93462
1.58363 0.99690 1.43234 1.16615 1.21068 0.90384 0.89047 0.85524
1.68393 1.31886 1.18536 1.08348 1.23089 0.87073 0.88371 1.00751
1.22744 1.00992 1.08291 0.96840 1.23119 0.95560 0.88501 0.92094
1.68023 0.98150 1.17565 1.41158 1.22643 1.00411 0.90219 0.94205
1.21858 0.83670 1.03571 0.92072 0.77750 0.90096 0.91929 0.92529
0.93236 0.91931 0.88366 0.89732 0.90924 0.87906 0.88286 0.92283
0.81473 0.83556 0.81264 0.92765 0.87503 0.90176 0.87795
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.25 -4.90 19.25 29.55 0.57 -4.33 16
2 C -0.16 -3.53 13.66 -37.12 -0.51 -4.04 16
3 C 0.23 4.93 4.77 -6.83 -0.03 4.90 16
4 N -0.59 -13.89 2.05 -176.57 -0.36 -14.25 16
5 C -0.27 -7.43 9.92 -15.06 -0.15 -7.58 16
6 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16
7 C 0.04 1.03 5.27 -17.43 -0.09 0.94 16
8 N -0.89 -26.60 13.97 55.49 0.78 -25.82 16
9 Si 0.87 20.51 25.03 -169.99 -4.25 16.25 16
10 H -0.28 -6.61 6.69 56.52 0.38 -6.23 16
11 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16
12 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16
13 C 0.17 3.44 4.96 -4.04 -0.02 3.42 16
14 C -0.16 -2.74 4.39 -27.88 -0.12 -2.86 16
15 C 0.52 8.50 7.71 -10.98 -0.08 8.41 16
16 O -0.54 -10.40 15.43 5.56 0.09 -10.32 16
17 N -0.63 -8.18 3.01 -172.50 -0.52 -8.70 16
18 C 0.11 1.31 6.60 -3.60 -0.02 1.29 16
19 C 0.06 0.63 4.80 -3.70 -0.02 0.61 16
20 N -0.46 -5.23 4.69 -175.12 -0.82 -6.05 16
21 C 0.50 5.74 7.17 -322.81 -2.32 3.42 16
22 N -0.55 -5.91 8.66 -13.93 -0.12 -6.03 16
23 C 0.17 1.31 11.30 -17.22 -0.19 1.12 16
24 C -0.27 -1.61 10.16 -39.31 -0.40 -2.01 16
25 C 0.18 1.31 11.30 -17.23 -0.19 1.11 16
26 N -0.53 -5.73 9.63 -13.93 -0.13 -5.87 16
27 C 0.05 0.56 5.49 -3.72 -0.02 0.54 16
28 C 0.11 1.22 6.50 -3.63 -0.02 1.20 16
29 H 0.21 3.05 7.80 -54.09 -0.42 2.63 16
30 H 0.08 1.89 3.57 -51.93 -0.19 1.71 16
31 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16
32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
33 H 0.05 0.99 8.03 -51.93 -0.42 0.58 16
34 H 0.06 1.36 8.00 -51.93 -0.42 0.95 16
35 H 0.10 1.71 7.67 -51.93 -0.40 1.31 16
36 H 0.08 1.33 8.00 -51.92 -0.42 0.91 16
37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
38 H 0.10 1.28 7.06 -51.93 -0.37 0.91 16
39 H 0.10 1.02 7.62 -51.93 -0.40 0.62 16
40 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16
41 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16
42 H 0.15 0.42 8.06 -52.49 -0.42 0.00 16
43 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16
44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
45 H 0.11 1.10 7.51 -51.93 -0.39 0.71 16
46 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16
47 H 0.10 1.13 6.02 -51.93 -0.31 0.82 16
LS Contribution 389.10 15.07 5.86 5.86
Total: -1.00 -34.44 389.10 -9.79 -44.24
By element:
Atomic # 1 Polarization: 11.24 SS G_CDS: -6.68 Total: 4.56 kcal
Atomic # 6 Polarization: 9.77 SS G_CDS: -3.63 Total: 6.14 kcal
Atomic # 7 Polarization: -65.55 SS G_CDS: -1.18 Total: -66.74 kcal
Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.32 kcal
Atomic # 14 Polarization: 20.51 SS G_CDS: -4.25 Total: 16.25 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -34.44 -9.79 -44.24 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000491255014.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 175.635 kcal
(2) G-P(sol) polarization free energy of solvation -34.442 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.193 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.237 kcal
(6) G-S(sol) free energy of system = (1) + (5) 131.398 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds