Wall clock time and date at job start Sat Apr 11 2020 06:57:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50698 * 109.47625 * 2 1
4 4 N 1.30278 * 124.96917 * 304.97791 * 3 2 1
5 5 C 1.34654 * 109.66612 * 179.97438 * 4 3 2
6 6 C 1.40825 * 107.26680 * 0.20130 * 5 4 3
7 7 N 1.32111 * 120.47121 * 180.31289 * 6 5 4
8 8 C 1.31732 * 121.94359 * 359.74538 * 7 6 5
9 9 C 1.38335 * 121.54661 * 0.02562 * 8 7 6
10 10 C 1.39633 * 119.37787 * 359.97438 * 9 8 7
11 11 C 1.47767 * 121.07705 * 179.97438 * 10 9 8
12 12 O 1.21560 * 120.00212 * 179.97438 * 11 10 9
13 13 N 1.34777 * 119.99624 * 0.02562 * 11 10 9
14 14 C 1.46499 * 119.99709 * 180.02562 * 13 11 10
15 15 C 1.52999 * 109.47055 * 179.97438 * 14 13 11
16 16 N 1.46500 * 109.47276 * 179.97438 * 15 14 13
17 17 C 1.36939 * 120.00350 * 270.00279 * 16 15 14
18 18 H 1.07995 * 119.99991 * 144.92930 * 17 16 15
19 19 C 1.38811 * 119.99666 * 324.92272 * 17 16 15
20 20 N 1.31618 * 120.00130 * 337.93845 * 19 17 16
21 21 Si 1.86795 * 119.99783 * 157.93531 * 19 17 16
22 22 H 1.48504 * 109.47291 * 0.02562 * 21 19 17
23 23 H 1.48505 * 109.46953 * 119.99956 * 21 19 17
24 24 H 1.48504 * 109.47404 * 240.00142 * 21 19 17
25 25 C 1.46503 * 119.99876 * 89.99732 * 16 15 14
26 26 C 1.53004 * 117.50085 * 183.23906 * 25 16 15
27 27 C 1.52999 * 117.49647 * 114.57737 * 25 16 15
28 28 N 1.36001 * 124.97293 * 125.47476 * 3 2 1
29 29 H 0.97001 * 126.35230 * 359.49760 * 28 3 2
30 30 H 1.08998 * 109.47573 * 180.02562 * 1 2 3
31 31 H 1.09007 * 109.47129 * 300.00036 * 1 2 3
32 32 H 1.09003 * 109.46726 * 59.99855 * 1 2 3
33 33 H 1.08999 * 109.47330 * 239.99340 * 2 1 3
34 34 H 1.09003 * 109.46726 * 120.00145 * 2 1 3
35 35 H 1.07998 * 119.22731 * 179.97438 * 8 7 6
36 36 H 1.08000 * 120.31198 * 179.97438 * 9 8 7
37 37 H 0.96993 * 120.00409 * 359.97438 * 13 11 10
38 38 H 1.09003 * 109.47721 * 59.99114 * 14 13 11
39 39 H 1.09006 * 109.47159 * 299.99605 * 14 13 11
40 40 H 1.09000 * 109.47119 * 299.99522 * 15 14 13
41 41 H 1.08999 * 109.47373 * 59.99686 * 15 14 13
42 42 H 0.96999 * 119.99868 * 175.91022 * 20 19 17
43 43 H 1.09003 * 115.55309 * 328.91312 * 25 16 15
44 44 H 1.08995 * 117.49606 * 0.02562 * 26 25 16
45 45 H 1.08997 * 117.50031 * 145.02545 * 26 25 16
46 46 H 1.08999 * 117.50194 * 214.97937 * 27 25 16
47 47 H 1.08998 * 117.50147 * 359.97438 * 27 25 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4207 0.0000
4 7 1.7044 2.3287 -0.8747
5 6 2.3291 3.4855 -0.5832
6 6 3.1092 3.2608 0.5675
7 7 3.8326 4.2363 1.0874
8 6 3.8598 5.4422 0.5580
9 6 3.1287 5.7519 -0.5749
10 6 2.3429 4.7654 -1.1740
11 6 1.5467 5.0551 -2.3845
12 8 0.8697 4.1813 -2.8904
13 7 1.5719 6.2880 -2.9285
14 6 0.7820 6.5755 -4.1283
15 6 0.9866 8.0360 -4.5358
16 7 0.1973 8.3233 -5.7360
17 6 0.7463 8.1393 -6.9770
18 1 0.1306 7.7927 -7.7938
19 6 2.0940 8.3983 -7.1850
20 7 2.7425 9.2042 -6.3711
21 14 2.9873 7.6032 -8.6199
22 1 2.0407 6.7471 -9.3792
23 1 3.5255 8.6593 -9.5145
24 1 4.1056 6.7714 -8.1073
25 6 -1.1795 8.8075 -5.6087
26 6 -1.9769 9.0171 -6.8976
27 6 -1.4781 10.2252 -6.1007
28 7 2.9021 1.9401 0.9076
29 1 3.2961 1.4713 1.6599
30 1 -0.3634 -1.0276 0.0005
31 1 -0.3634 0.5139 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 1.8934 -0.5139 -0.8899
34 1 1.8933 -0.5139 0.8900
35 1 4.4664 6.2073 1.0196
36 1 3.1654 6.7474 -0.9920
37 1 2.1123 6.9852 -2.5251
38 1 -0.2735 6.4015 -3.9190
39 1 1.1037 5.9230 -4.9401
40 1 0.6646 8.6882 -3.7240
41 1 2.0420 8.2104 -4.7451
42 1 3.6969 9.3388 -6.4806
43 1 -1.7231 8.4540 -4.7325
44 1 -1.4772 8.7943 -7.8403
45 1 -3.0450 8.8018 -6.8693
46 1 -2.2184 10.8041 -5.5485
47 1 -0.6502 10.7977 -6.5187
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001731881185.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:26
Heat of formation + Delta-G solvation = 76.121448 kcal
Electronic energy + Delta-G solvation = -29152.216177 eV
Core-core repulsion = 25143.585979 eV
Total energy + Delta-G solvation = -4008.630198 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-43.56176 -40.80958 -39.33826 -38.80428 -36.35006 -35.07852 -34.76868 -34.49716
-32.98857 -32.22064 -30.25902 -29.37444 -26.64105 -25.95881 -24.65402 -24.16017
-23.24240 -22.84745 -21.86322 -21.76689 -21.53414 -19.66465 -18.68709 -18.41046
-17.97630 -17.29450 -17.08134 -16.93988 -16.32572 -16.24214 -16.23461 -15.68189
-15.64633 -15.21054 -14.96898 -14.76404 -14.45128 -14.43366 -13.96160 -13.81604
-13.60341 -13.27492 -13.03520 -12.94289 -12.63067 -12.54021 -12.49283 -12.26526
-12.14543 -12.10567 -11.91310 -11.87755 -11.66228 -11.38506 -11.30530 -10.91604
-10.49943 -10.29301 -10.19457 -9.94114 -9.52615 -8.57584 -7.84272 -5.47613
-0.74807 0.04741 1.41111 1.41845 1.46838 1.55112 1.58195 1.86984
2.01119 2.48675 2.77372 2.92040 3.13168 3.28535 3.40845 3.51245
3.57111 3.65599 3.78969 4.02118 4.16591 4.28562 4.30311 4.36514
4.38902 4.44893 4.51990 4.58097 4.59510 4.66345 4.80333 4.82899
4.95021 4.96483 4.99322 5.04609 5.07579 5.21521 5.30773 5.37059
5.43414 5.48982 5.55428 5.67243 5.76289 6.11175 6.42216 6.53403
6.69463 6.75231 7.11286 7.19389 7.80518 8.29672 9.07871
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.012754 B = 0.002526 C = 0.002455
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2194.891618 B =11082.280390 C =11401.674860
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.040 4.040
3 C 0.305 3.695
4 N -0.513 5.513
5 C 0.023 3.977
6 C 0.220 3.780
7 N -0.472 5.472
8 C 0.137 3.863
9 C -0.129 4.129
10 C -0.066 4.066
11 C 0.545 3.455
12 O -0.560 6.560
13 N -0.701 5.701
14 C 0.122 3.878
15 C 0.145 3.855
16 N -0.565 5.565
17 C -0.262 4.262
18 H 0.058 0.942
19 C -0.029 4.029
20 N -0.904 5.904
21 Si 0.945 3.055
22 H -0.274 1.274
23 H -0.289 1.289
24 H -0.290 1.290
25 C 0.098 3.902
26 C -0.186 4.186
27 C -0.209 4.209
28 N -0.569 5.569
29 H 0.445 0.555
30 H 0.094 0.906
31 H 0.053 0.947
32 H 0.039 0.961
33 H 0.108 0.892
34 H 0.128 0.872
35 H 0.221 0.779
36 H 0.180 0.820
37 H 0.413 0.587
38 H 0.047 0.953
39 H 0.031 0.969
40 H 0.050 0.950
41 H 0.085 0.915
42 H 0.253 0.747
43 H 0.111 0.889
44 H 0.074 0.926
45 H 0.109 0.891
46 H 0.104 0.896
47 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.536 -12.351 20.331 23.838
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.079 4.079
3 C 0.038 3.962
4 N -0.233 5.233
5 C -0.101 4.101
6 C -0.017 4.017
7 N -0.185 5.185
8 C -0.029 4.029
9 C -0.151 4.151
10 C -0.079 4.079
11 C 0.332 3.668
12 O -0.438 6.438
13 N -0.355 5.355
14 C -0.004 4.004
15 C 0.018 3.982
16 N -0.283 5.283
17 C -0.392 4.392
18 H 0.075 0.925
19 C -0.227 4.227
20 N -0.548 5.548
21 Si 0.774 3.226
22 H -0.199 1.199
23 H -0.215 1.215
24 H -0.216 1.216
25 C -0.010 4.010
26 C -0.224 4.224
27 C -0.250 4.250
28 N -0.186 5.186
29 H 0.289 0.711
30 H 0.113 0.887
31 H 0.072 0.928
32 H 0.058 0.942
33 H 0.126 0.874
34 H 0.146 0.854
35 H 0.237 0.763
36 H 0.198 0.802
37 H 0.250 0.750
38 H 0.065 0.935
39 H 0.050 0.950
40 H 0.069 0.931
41 H 0.102 0.898
42 H 0.063 0.937
43 H 0.128 0.872
44 H 0.093 0.907
45 H 0.127 0.873
46 H 0.122 0.878
47 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 1.122 -13.187 19.925 23.920
hybrid contribution 1.005 0.252 -0.840 1.334
sum 2.128 -12.935 19.085 23.154
Atomic orbital electron populations
1.21681 0.93086 1.03593 1.01791 1.20465 0.97238 0.83515 1.06691
1.24761 0.88411 0.98425 0.84628 1.70260 1.26581 0.99622 1.26845
1.19605 0.99666 0.94111 0.96685 1.19066 0.99377 0.88156 0.95127
1.66355 1.19234 1.00333 1.32609 1.23312 0.96005 0.91659 0.91882
1.22633 0.95343 1.00221 0.96944 1.19766 0.99746 0.92530 0.95856
1.18455 0.81762 0.82561 0.84043 1.90794 1.43010 1.46629 1.63357
1.45764 1.48625 1.11787 1.29275 1.21867 0.93870 0.99781 0.84859
1.20972 0.99964 0.89778 0.87503 1.43425 1.09603 1.73035 1.02210
1.19216 0.93487 1.37439 0.89026 0.92478 1.25624 0.99448 0.97558
1.00073 1.70110 1.08643 1.34701 1.41351 0.85571 0.78666 0.78189
0.80215 1.19909 1.21530 1.21617 1.21533 0.86896 0.95669 0.96886
1.23055 0.99368 1.03518 0.96481 1.23263 1.02654 0.92824 1.06230
1.42730 1.40235 1.07284 1.28322 0.71133 0.88702 0.92798 0.94162
0.87389 0.85398 0.76289 0.80244 0.74983 0.93462 0.95009 0.93121
0.89769 0.93708 0.87182 0.90735 0.87288 0.87820 0.92269
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.02 9.85 71.98 0.71 -1.31 16
2 C -0.04 -0.48 6.56 29.85 0.20 -0.29 16
3 C 0.30 6.68 7.37 137.88 1.02 7.70 16
4 N -0.51 -17.00 10.57 -179.45 -1.90 -18.90 16
5 C 0.02 0.75 6.85 40.01 0.27 1.03 16
6 C 0.22 5.64 8.46 133.93 1.13 6.77 16
7 N -0.47 -10.53 10.35 -192.84 -2.00 -12.52 16
8 C 0.14 2.37 11.14 84.73 0.94 3.32 16
9 C -0.13 -2.67 9.60 22.63 0.22 -2.46 16
10 C -0.07 -2.06 5.93 -19.75 -0.12 -2.18 16
11 C 0.55 20.84 7.79 86.76 0.68 21.52 16
12 O -0.56 -26.62 16.19 -3.91 -0.06 -26.68 16
13 N -0.70 -24.23 5.51 -466.04 -2.57 -26.80 16
14 C 0.12 5.10 6.00 86.38 0.52 5.62 16
15 C 0.14 6.33 5.45 86.38 0.47 6.80 16
16 N -0.57 -27.30 2.78 -678.03 -1.88 -29.18 16
17 C -0.26 -14.02 8.63 84.03 0.73 -13.30 16
18 H 0.06 3.13 6.55 -2.91 -0.02 3.11 16
19 C -0.03 -1.57 4.96 84.86 0.42 -1.15 16
20 N -0.90 -49.87 11.33 21.65 0.25 -49.62 16
21 Si 0.94 44.56 29.61 68.60 2.03 46.59 16
22 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16
23 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16
24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16
25 C 0.10 4.04 6.56 44.99 0.30 4.34 16
26 C -0.19 -7.10 9.80 30.62 0.30 -6.80 16
27 C -0.21 -8.10 10.36 30.62 0.32 -7.78 16
28 N -0.57 -10.58 6.23 -183.76 -1.14 -11.73 16
29 H 0.44 4.41 8.96 -92.71 -0.83 3.57 16
30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16
31 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16
32 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16
33 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16
34 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16
35 H 0.22 1.61 8.06 -2.91 -0.02 1.59 16
36 H 0.18 2.52 6.53 -2.91 -0.02 2.50 16
37 H 0.41 11.16 6.61 -92.71 -0.61 10.55 16
38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16
39 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16
40 H 0.05 2.00 8.07 -2.39 -0.02 1.98 16
41 H 0.08 4.14 5.35 -2.39 -0.01 4.12 16
42 H 0.25 13.48 8.32 -92.71 -0.77 12.70 16
43 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16
44 H 0.07 3.20 6.37 -2.39 -0.02 3.19 16
45 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16
46 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16
47 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16
Total: -1.00 -81.12 393.60 0.40 -80.71
By element:
Atomic # 1 Polarization: 26.72 SS G_CDS: -0.42 Total: 26.31 kcal
Atomic # 6 Polarization: 13.72 SS G_CDS: 8.10 Total: 21.82 kcal
Atomic # 7 Polarization: -139.50 SS G_CDS: -9.25 Total: -148.75 kcal
Atomic # 8 Polarization: -26.62 SS G_CDS: -0.06 Total: -26.68 kcal
Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal
Total: -81.12 0.40 -80.71 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001731881185.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 156.836 kcal
(2) G-P(sol) polarization free energy of solvation -81.116 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.720 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.401 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.715 kcal
(6) G-S(sol) free energy of system = (1) + (5) 76.121 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds