Wall clock time and date at job start Sat Apr 11 2020 06:57:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08994 * 109.58767 * 2 1
4 4 C 1.53198 * 109.70080 * 120.35217 * 2 1 3
5 5 C 1.53044 * 109.31330 * 174.49340 * 4 2 1
6 6 C 1.53043 * 109.53527 * 298.63769 * 5 4 2
7 7 H 1.09005 * 109.52179 * 181.33042 * 6 5 4
8 8 N 1.46495 * 109.50082 * 301.40893 * 6 5 4
9 9 C 1.34773 * 120.00166 * 204.84336 * 8 6 5
10 10 O 1.21563 * 120.00322 * 359.97438 * 9 8 6
11 11 C 1.47694 * 119.99670 * 179.97438 * 9 8 6
12 12 C 1.39980 * 120.38460 * 0.02562 * 11 9 8
13 13 N 1.31386 * 121.15897 * 180.02562 * 12 11 9
14 14 C 1.32544 * 121.79035 * 359.97438 * 13 12 11
15 15 C 1.40800 * 120.62352 * 359.97438 * 14 13 12
16 16 C 1.39489 * 119.13364 * 0.02562 * 15 14 13
17 17 N 1.35773 * 107.10975 * 180.02562 * 15 14 13
18 18 C 1.30054 * 109.44123 * 0.02634 * 17 15 14
19 19 N 1.36172 * 110.11163 * 359.97438 * 18 17 15
20 20 C 1.46499 * 126.24184 * 180.02562 * 19 18 17
21 21 C 1.53190 * 109.31535 * 61.36726 * 6 5 4
22 22 N 1.46926 * 108.77215 * 305.35863 * 21 6 5
23 23 C 1.36939 * 120.63421 * 233.62805 * 22 21 6
24 24 H 1.08002 * 119.99977 * 150.17024 * 23 22 21
25 25 C 1.38809 * 119.99743 * 330.17774 * 23 22 21
26 26 N 1.31616 * 120.00223 * 344.48108 * 25 23 22
27 27 Si 1.86806 * 119.99833 * 164.48819 * 25 23 22
28 28 H 1.48499 * 109.47063 * 89.99470 * 27 25 23
29 29 H 1.48496 * 109.47052 * 209.99332 * 27 25 23
30 30 H 1.48499 * 109.46807 * 329.99381 * 27 25 23
31 31 H 1.09003 * 109.47096 * 180.27882 * 1 2 3
32 32 H 1.08992 * 109.47665 * 300.28417 * 1 2 3
33 33 H 1.08997 * 109.46907 * 60.28893 * 1 2 3
34 34 H 1.08992 * 109.49909 * 294.44765 * 4 2 1
35 35 H 1.08999 * 109.49525 * 54.54748 * 4 2 1
36 36 H 1.08996 * 109.46257 * 178.61353 * 5 4 2
37 37 H 1.08996 * 109.45760 * 58.65414 * 5 4 2
38 38 H 0.97003 * 119.99981 * 24.84200 * 8 6 5
39 39 H 1.07999 * 119.42177 * 0.02562 * 12 11 9
40 40 H 1.07999 * 120.96860 * 180.02562 * 16 15 14
41 41 H 1.08000 * 124.94713 * 180.02562 * 18 17 15
42 42 H 1.09003 * 109.46957 * 89.97338 * 20 19 18
43 43 H 1.08997 * 109.47651 * 209.97859 * 20 19 18
44 44 H 1.09000 * 109.46937 * 329.98150 * 20 19 18
45 45 H 1.08995 * 109.59199 * 65.14857 * 21 6 5
46 46 H 1.08998 * 109.58649 * 185.43736 * 21 6 5
47 47 H 0.97005 * 120.00147 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8954 1.0269 0.0000
4 6 2.0464 -0.7288 1.2446
5 6 3.5705 -0.8443 1.1676
6 6 3.9601 -1.6608 -0.0668
7 1 5.0446 -1.7630 -0.1086
8 7 3.3466 -2.9888 0.0116
9 6 3.9027 -4.0277 -0.6424
10 8 4.9132 -3.8628 -1.2978
11 6 3.2844 -5.3666 -0.5628
12 6 2.1206 -5.5655 0.1891
13 7 1.5581 -6.7500 0.2708
14 6 2.0619 -7.8066 -0.3510
15 6 3.2299 -7.6917 -1.1289
16 6 3.8537 -6.4488 -1.2378
17 7 3.4969 -8.9237 -1.6331
18 6 2.5915 -9.7637 -1.2256
19 7 1.6850 -9.1273 -0.4334
20 6 0.5208 -9.7376 0.2134
21 6 3.4655 -0.9425 -1.3262
22 7 2.0226 -0.6982 -1.1953
23 6 1.1534 -1.1134 -2.1685
24 1 0.1403 -1.3826 -1.9087
25 6 1.5746 -1.1885 -3.4891
26 7 2.6835 -0.5852 -3.8615
27 14 0.5673 -2.1456 -4.7377
28 1 -0.4292 -1.2421 -5.3669
29 1 1.4673 -2.6946 -5.7834
30 1 -0.1369 -3.2607 -4.0553
31 1 -0.3633 -1.0277 0.0050
32 1 -0.3634 0.5182 0.8873
33 1 -0.3633 0.5093 -0.8926
34 1 1.7687 -0.1672 2.1365
35 1 1.6079 -1.7257 1.2906
36 1 3.9429 -1.3407 2.0637
37 1 4.0070 0.1519 1.0966
38 1 2.5401 -3.1203 0.5343
39 1 1.6772 -4.7305 0.7112
40 1 4.7506 -6.3269 -1.8269
41 1 2.5632 -10.8134 -1.4779
42 1 0.8039 -10.1039 1.2002
43 1 -0.2699 -8.9941 0.3147
44 1 0.1622 -10.5689 -0.3936
45 1 3.9887 0.0075 -1.4345
46 1 3.6548 -1.5655 -2.2004
47 1 2.9776 -0.6374 -4.7844
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001071735633.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:33
Heat of formation + Delta-G solvation = 82.280162 kcal
Electronic energy + Delta-G solvation = -30814.295265 eV
Core-core repulsion = 26805.932129 eV
Total energy + Delta-G solvation = -4008.363136 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 9.68 seconds
Orbital eigenvalues (eV)
-42.48952 -39.77508 -38.26995 -37.26353 -34.71292 -34.13269 -32.72419 -32.01016
-30.92146 -29.92295 -29.48932 -27.49393 -26.21887 -25.02395 -24.19851 -23.74727
-22.15582 -21.05425 -20.92047 -20.36416 -18.77946 -18.11953 -17.83797 -16.93824
-16.32210 -16.30050 -15.68429 -15.34077 -14.83419 -14.40122 -14.32953 -14.03283
-13.92158 -13.70470 -13.60262 -13.39016 -13.14275 -13.03391 -12.98048 -12.80206
-12.48221 -12.41588 -11.88459 -11.21438 -11.14416 -11.10624 -10.95923 -10.86429
-10.83340 -10.67155 -10.37226 -10.31467 -9.94350 -9.75055 -9.48334 -9.43866
-9.16345 -8.81017 -8.69121 -8.41680 -8.34202 -6.56088 -5.72041 -3.16132
0.70004 0.84195 2.10731 2.58572 3.20846 3.40094 3.48470 3.49291
3.53370 3.93617 4.01683 4.13143 4.32973 4.53305 4.70393 4.81193
4.83075 4.90315 5.03934 5.13018 5.31818 5.34319 5.39069 5.49304
5.52552 5.61642 5.70020 6.01150 6.04032 6.07924 6.12652 6.17465
6.34264 6.36502 6.39316 6.46303 6.53918 6.61826 6.69066 6.69866
6.90670 7.06982 7.13610 7.40187 7.50657 7.68718 7.72198 7.87206
8.06595 8.52610 8.74007 9.26974 9.91463 10.47603 11.36056
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.011111 B = 0.003814 C = 0.003471
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2519.450096 B = 7338.966426 C = 8065.710940
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.165 3.835
3 H 0.025 0.975
4 C -0.131 4.131
5 C -0.119 4.119
6 C 0.119 3.881
7 H 0.078 0.922
8 N -0.693 5.693
9 C 0.567 3.433
10 O -0.539 6.539
11 C -0.186 4.186
12 C 0.178 3.822
13 N -0.486 5.486
14 C 0.252 3.748
15 C -0.009 4.009
16 C 0.045 3.955
17 N -0.479 5.479
18 C 0.267 3.733
19 N -0.487 5.487
20 C 0.082 3.918
21 C 0.162 3.838
22 N -0.582 5.582
23 C -0.251 4.251
24 H 0.067 0.933
25 C 0.009 3.991
26 N -0.897 5.897
27 Si 0.892 3.108
28 H -0.288 1.288
29 H -0.290 1.290
30 H -0.281 1.281
31 H 0.051 0.949
32 H 0.036 0.964
33 H 0.060 0.940
34 H 0.053 0.947
35 H 0.054 0.946
36 H 0.052 0.948
37 H 0.071 0.929
38 H 0.393 0.607
39 H 0.169 0.831
40 H 0.155 0.845
41 H 0.222 0.778
42 H 0.076 0.924
43 H 0.090 0.910
44 H 0.089 0.911
45 H 0.026 0.974
46 H 0.096 0.904
47 H 0.253 0.747
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.874 -14.706 12.540 19.539
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C 0.058 3.942
3 H 0.042 0.958
4 C -0.170 4.170
5 C -0.157 4.157
6 C 0.013 3.987
7 H 0.096 0.904
8 N -0.343 5.343
9 C 0.352 3.648
10 O -0.417 6.417
11 C -0.195 4.195
12 C 0.009 3.991
13 N -0.198 5.198
14 C 0.017 3.983
15 C -0.129 4.129
16 C 0.017 3.983
17 N -0.198 5.198
18 C -0.020 4.020
19 N -0.180 5.180
20 C -0.060 4.060
21 C 0.035 3.965
22 N -0.306 5.306
23 C -0.381 4.381
24 H 0.085 0.915
25 C -0.190 4.190
26 N -0.541 5.541
27 Si 0.722 3.278
28 H -0.215 1.215
29 H -0.216 1.216
30 H -0.207 1.207
31 H 0.070 0.930
32 H 0.055 0.945
33 H 0.080 0.920
34 H 0.072 0.928
35 H 0.072 0.928
36 H 0.071 0.929
37 H 0.090 0.910
38 H 0.229 0.771
39 H 0.186 0.814
40 H 0.173 0.827
41 H 0.239 0.761
42 H 0.094 0.906
43 H 0.109 0.891
44 H 0.107 0.893
45 H 0.044 0.956
46 H 0.114 0.886
47 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges -2.266 -14.962 11.910 19.257
hybrid contribution -1.011 -0.384 -0.540 1.209
sum -3.276 -15.346 11.370 19.378
Atomic orbital electron populations
1.21791 0.96137 1.01194 1.00184 1.20460 0.92862 0.93656 0.87181
0.95789 1.22071 0.95155 1.00626 0.99150 1.21696 0.97000 1.00226
0.96768 1.21822 0.97089 0.81416 0.98340 0.90403 1.45736 1.29374
1.08591 1.50622 1.17636 0.84054 0.83352 0.79751 1.90768 1.25264
1.84744 1.40909 1.20811 0.99307 0.95469 1.03866 1.22725 0.90413
0.92494 0.93472 1.66345 1.33091 0.97757 1.22657 1.19093 0.94328
0.86433 0.98472 1.19527 0.97114 0.93961 1.02274 1.20861 0.97551
0.87344 0.92564 1.70467 1.25396 0.99435 1.24457 1.25440 0.85496
0.99746 0.91308 1.45018 1.24733 1.06045 1.42198 1.22025 0.86321
0.99506 0.98148 1.21167 0.83770 0.97084 0.94433 1.44038 1.02626
1.64854 1.19051 1.19033 0.95056 1.37961 0.86005 0.91542 1.25032
0.97680 0.99350 0.96953 1.69977 1.23984 1.43502 1.16648 0.86467
0.79502 0.80089 0.81730 1.21470 1.21599 1.20695 0.92972 0.94461
0.92046 0.92803 0.92767 0.92931 0.91007 0.77082 0.81437 0.82711
0.76148 0.90590 0.89115 0.89256 0.95593 0.88630 0.93666
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.40 7.96 37.16 0.30 -2.10 16
2 C 0.17 3.16 3.49 -67.60 -0.24 2.93 16
3 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16
4 C -0.13 -1.99 5.21 -26.61 -0.14 -2.13 16
5 C -0.12 -1.80 5.59 -26.69 -0.15 -1.95 16
6 C 0.12 2.20 2.81 -67.81 -0.19 2.01 16
7 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16
8 N -0.69 -12.06 4.87 -54.68 -0.27 -12.33 16
9 C 0.57 10.78 7.74 -12.40 -0.10 10.68 16
10 O -0.54 -12.10 16.06 5.31 0.09 -12.01 16
11 C -0.19 -3.11 5.89 -104.85 -0.62 -3.73 16
12 C 0.18 2.61 10.69 -17.09 -0.18 2.43 16
13 N -0.49 -7.22 10.36 -11.96 -0.12 -7.34 16
14 C 0.25 3.66 7.99 -155.62 -1.24 2.42 16
15 C -0.01 -0.15 7.23 -84.69 -0.61 -0.76 16
16 C 0.04 0.75 9.75 -38.58 -0.38 0.37 16
17 N -0.48 -6.80 11.29 -12.02 -0.14 -6.93 16
18 C 0.27 2.60 12.50 -89.70 -1.12 1.48 16
19 N -0.49 -5.12 3.19 -124.99 -0.40 -5.52 16
20 C 0.08 0.49 11.18 59.85 0.67 1.16 16
21 C 0.16 3.79 4.88 -3.71 -0.02 3.78 16
22 N -0.58 -13.57 2.90 -164.78 -0.48 -14.05 16
23 C -0.25 -6.55 8.57 -15.06 -0.13 -6.68 16
24 H 0.07 1.70 6.24 -52.49 -0.33 1.37 16
25 C 0.01 0.25 4.94 -17.43 -0.09 0.17 16
26 N -0.90 -26.36 11.23 55.49 0.62 -25.73 16
27 Si 0.89 22.31 29.58 -169.99 -5.03 17.28 16
28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
29 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16
30 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16
31 H 0.05 0.92 7.43 -51.93 -0.39 0.54 16
32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16
33 H 0.06 1.20 7.63 -51.93 -0.40 0.81 16
34 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16
35 H 0.05 0.80 6.40 -51.93 -0.33 0.46 16
36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
37 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16
38 H 0.39 5.97 4.81 -40.82 -0.20 5.77 16
39 H 0.17 2.04 6.39 -52.49 -0.34 1.70 16
40 H 0.16 2.59 7.72 -52.49 -0.41 2.18 16
41 H 0.22 0.91 8.06 -52.49 -0.42 0.48 16
42 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16
43 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16
44 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16
45 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16
46 H 0.10 2.66 6.15 -51.93 -0.32 2.34 16
47 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16
LS Contribution 377.22 15.07 5.68 5.68
Total: -1.00 -35.17 377.22 -10.73 -45.90
By element:
Atomic # 1 Polarization: 11.45 SS G_CDS: -6.45 Total: 4.99 kcal
Atomic # 6 Polarization: 14.29 SS G_CDS: -4.23 Total: 10.06 kcal
Atomic # 7 Polarization: -71.13 SS G_CDS: -0.78 Total: -71.91 kcal
Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.01 kcal
Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal
Total LS contribution 5.68 Total: 5.68 kcal
Total: -35.17 -10.73 -45.90 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001071735633.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 128.176 kcal
(2) G-P(sol) polarization free energy of solvation -35.171 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.005 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.725 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.896 kcal
(6) G-S(sol) free energy of system = (1) + (5) 82.280 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 9.68 seconds