Wall clock time and date at job start Sat Apr 11 2020 06:57:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08994 * 109.58767 * 2 1
4 4 C 1.53198 * 109.70080 * 120.35217 * 2 1 3
5 5 C 1.53044 * 109.31330 * 174.49340 * 4 2 1
6 6 C 1.53043 * 109.53527 * 298.63769 * 5 4 2
7 7 H 1.09005 * 109.52179 * 181.33042 * 6 5 4
8 8 N 1.46495 * 109.50082 * 301.40893 * 6 5 4
9 9 C 1.34773 * 120.00166 * 204.84336 * 8 6 5
10 10 O 1.21563 * 120.00322 * 359.97438 * 9 8 6
11 11 C 1.47694 * 119.99670 * 179.97438 * 9 8 6
12 12 C 1.39980 * 120.38460 * 0.02562 * 11 9 8
13 13 N 1.31386 * 121.15897 * 180.02562 * 12 11 9
14 14 C 1.32544 * 121.79035 * 359.97438 * 13 12 11
15 15 C 1.40800 * 120.62352 * 359.97438 * 14 13 12
16 16 C 1.39489 * 119.13364 * 0.02562 * 15 14 13
17 17 N 1.35773 * 107.10975 * 180.02562 * 15 14 13
18 18 C 1.30054 * 109.44123 * 0.02634 * 17 15 14
19 19 N 1.36172 * 110.11163 * 359.97438 * 18 17 15
20 20 C 1.46499 * 126.24184 * 180.02562 * 19 18 17
21 21 C 1.53190 * 109.31535 * 61.36726 * 6 5 4
22 22 N 1.46926 * 108.77215 * 305.35863 * 21 6 5
23 23 C 1.36939 * 120.63421 * 233.62805 * 22 21 6
24 24 H 1.08002 * 119.99977 * 150.17024 * 23 22 21
25 25 C 1.38809 * 119.99743 * 330.17774 * 23 22 21
26 26 N 1.31616 * 120.00223 * 344.48108 * 25 23 22
27 27 Si 1.86806 * 119.99833 * 164.48819 * 25 23 22
28 28 H 1.48499 * 109.47063 * 89.99470 * 27 25 23
29 29 H 1.48496 * 109.47052 * 209.99332 * 27 25 23
30 30 H 1.48499 * 109.46807 * 329.99381 * 27 25 23
31 31 H 1.09003 * 109.47096 * 180.27882 * 1 2 3
32 32 H 1.08992 * 109.47665 * 300.28417 * 1 2 3
33 33 H 1.08997 * 109.46907 * 60.28893 * 1 2 3
34 34 H 1.08992 * 109.49909 * 294.44765 * 4 2 1
35 35 H 1.08999 * 109.49525 * 54.54748 * 4 2 1
36 36 H 1.08996 * 109.46257 * 178.61353 * 5 4 2
37 37 H 1.08996 * 109.45760 * 58.65414 * 5 4 2
38 38 H 0.97003 * 119.99981 * 24.84200 * 8 6 5
39 39 H 1.07999 * 119.42177 * 0.02562 * 12 11 9
40 40 H 1.07999 * 120.96860 * 180.02562 * 16 15 14
41 41 H 1.08000 * 124.94713 * 180.02562 * 18 17 15
42 42 H 1.09003 * 109.46957 * 89.97338 * 20 19 18
43 43 H 1.08997 * 109.47651 * 209.97859 * 20 19 18
44 44 H 1.09000 * 109.46937 * 329.98150 * 20 19 18
45 45 H 1.08995 * 109.59199 * 65.14857 * 21 6 5
46 46 H 1.08998 * 109.58649 * 185.43736 * 21 6 5
47 47 H 0.97005 * 120.00147 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8954 1.0269 0.0000
4 6 2.0464 -0.7288 1.2446
5 6 3.5705 -0.8443 1.1676
6 6 3.9601 -1.6608 -0.0668
7 1 5.0446 -1.7630 -0.1086
8 7 3.3466 -2.9888 0.0116
9 6 3.9027 -4.0277 -0.6424
10 8 4.9132 -3.8628 -1.2978
11 6 3.2844 -5.3666 -0.5628
12 6 2.1206 -5.5655 0.1891
13 7 1.5581 -6.7500 0.2708
14 6 2.0619 -7.8066 -0.3510
15 6 3.2299 -7.6917 -1.1289
16 6 3.8537 -6.4488 -1.2378
17 7 3.4969 -8.9237 -1.6331
18 6 2.5915 -9.7637 -1.2256
19 7 1.6850 -9.1273 -0.4334
20 6 0.5208 -9.7376 0.2134
21 6 3.4655 -0.9425 -1.3262
22 7 2.0226 -0.6982 -1.1953
23 6 1.1534 -1.1134 -2.1685
24 1 0.1403 -1.3826 -1.9087
25 6 1.5746 -1.1885 -3.4891
26 7 2.6835 -0.5852 -3.8615
27 14 0.5673 -2.1456 -4.7377
28 1 -0.4292 -1.2421 -5.3669
29 1 1.4673 -2.6946 -5.7834
30 1 -0.1369 -3.2607 -4.0553
31 1 -0.3633 -1.0277 0.0050
32 1 -0.3634 0.5182 0.8873
33 1 -0.3633 0.5093 -0.8926
34 1 1.7687 -0.1672 2.1365
35 1 1.6079 -1.7257 1.2906
36 1 3.9429 -1.3407 2.0637
37 1 4.0070 0.1519 1.0966
38 1 2.5401 -3.1203 0.5343
39 1 1.6772 -4.7305 0.7112
40 1 4.7506 -6.3269 -1.8269
41 1 2.5632 -10.8134 -1.4779
42 1 0.8039 -10.1039 1.2002
43 1 -0.2699 -8.9941 0.3147
44 1 0.1622 -10.5689 -0.3936
45 1 3.9887 0.0075 -1.4345
46 1 3.6548 -1.5655 -2.2004
47 1 2.9776 -0.6374 -4.7844
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001071735633.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:31
Heat of formation + Delta-G solvation = 59.376647 kcal
Electronic energy + Delta-G solvation = -30815.288436 eV
Core-core repulsion = 26805.932129 eV
Total energy + Delta-G solvation = -4009.356307 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 1.26 seconds
Orbital eigenvalues (eV)
-43.47186 -41.21585 -39.58615 -38.71148 -35.84901 -35.55268 -34.49648 -33.22642
-32.26333 -31.71809 -30.68078 -28.23852 -27.77892 -26.77067 -25.33702 -24.89818
-23.84415 -22.32548 -22.01553 -21.85131 -20.39146 -19.31539 -18.85798 -18.26689
-17.94090 -17.22058 -17.07293 -16.88733 -16.29176 -15.97218 -15.71499 -15.50040
-15.24168 -14.96640 -14.78750 -14.59035 -14.51379 -14.28849 -14.24694 -13.95231
-13.63238 -13.50019 -13.43626 -12.95152 -12.88321 -12.59285 -12.52008 -12.39646
-12.14193 -12.12561 -12.05285 -11.83233 -11.53255 -11.24100 -11.10324 -11.00806
-10.51244 -10.38395 -10.06177 -9.77905 -9.71561 -8.53647 -7.80900 -5.25143
-0.45360 -0.29182 1.28649 1.37224 1.41652 1.46958 1.65268 1.85858
2.18989 2.49812 2.74359 2.93428 3.25652 3.35709 3.49818 3.64820
3.67380 3.75413 3.97049 4.05735 4.08901 4.15194 4.23834 4.30749
4.45049 4.53763 4.69322 4.73543 4.74097 4.77526 4.85318 4.86887
4.99221 5.01845 5.09341 5.12826 5.17707 5.31610 5.33481 5.37844
5.61969 5.65392 5.70017 5.76848 5.78680 5.89525 6.46782 6.56369
6.59136 6.64306 7.21386 7.29187 7.96273 8.46552 9.24295
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.011111 B = 0.003814 C = 0.003471
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2519.450096 B = 7338.966426 C = 8065.710940
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C 0.154 3.846
3 H 0.013 0.987
4 C -0.120 4.120
5 C -0.110 4.110
6 C 0.128 3.872
7 H 0.068 0.932
8 N -0.681 5.681
9 C 0.564 3.436
10 O -0.585 6.585
11 C -0.199 4.199
12 C 0.179 3.821
13 N -0.484 5.484
14 C 0.240 3.760
15 C -0.027 4.027
16 C 0.025 3.975
17 N -0.527 5.527
18 C 0.297 3.703
19 N -0.482 5.482
20 C 0.074 3.926
21 C 0.172 3.828
22 N -0.594 5.594
23 C -0.232 4.232
24 H 0.077 0.923
25 C -0.051 4.051
26 N -0.935 5.935
27 Si 0.941 3.059
28 H -0.281 1.281
29 H -0.308 1.308
30 H -0.272 1.272
31 H 0.053 0.947
32 H 0.075 0.925
33 H 0.032 0.968
34 H 0.092 0.908
35 H 0.066 0.934
36 H 0.088 0.912
37 H 0.074 0.926
38 H 0.407 0.593
39 H 0.194 0.806
40 H 0.137 0.863
41 H 0.281 0.719
42 H 0.093 0.907
43 H 0.081 0.919
44 H 0.129 0.871
45 H -0.002 1.002
46 H 0.044 0.956
47 H 0.241 0.759
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.643 -17.236 15.881 24.106
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C 0.048 3.952
3 H 0.031 0.969
4 C -0.159 4.159
5 C -0.148 4.148
6 C 0.022 3.978
7 H 0.086 0.914
8 N -0.331 5.331
9 C 0.351 3.649
10 O -0.466 6.466
11 C -0.207 4.207
12 C 0.009 3.991
13 N -0.196 5.196
14 C 0.003 3.997
15 C -0.146 4.146
16 C -0.003 4.003
17 N -0.246 5.246
18 C 0.011 3.989
19 N -0.173 5.173
20 C -0.065 4.065
21 C 0.045 3.955
22 N -0.318 5.318
23 C -0.363 4.363
24 H 0.094 0.906
25 C -0.246 4.246
26 N -0.582 5.582
27 Si 0.771 3.229
28 H -0.208 1.208
29 H -0.235 1.235
30 H -0.197 1.197
31 H 0.072 0.928
32 H 0.094 0.906
33 H 0.052 0.948
34 H 0.110 0.890
35 H 0.084 0.916
36 H 0.107 0.893
37 H 0.092 0.908
38 H 0.246 0.754
39 H 0.211 0.789
40 H 0.155 0.845
41 H 0.296 0.704
42 H 0.112 0.888
43 H 0.099 0.901
44 H 0.147 0.853
45 H 0.016 0.984
46 H 0.063 0.937
47 H 0.050 0.950
Dipole moment (debyes) X Y Z Total
from point charges -5.115 -17.511 15.325 23.826
hybrid contribution -0.196 0.277 -1.543 1.580
sum -5.310 -17.234 13.782 22.697
Atomic orbital electron populations
1.21726 0.94714 1.01449 1.00739 1.20784 0.94143 0.93225 0.87004
0.96921 1.21974 0.94636 1.01226 0.98057 1.21676 0.97372 0.99919
0.95847 1.21549 0.96508 0.81933 0.97802 0.91393 1.45595 1.29640
1.07719 1.50167 1.18066 0.83505 0.84518 0.78857 1.90738 1.27427
1.85594 1.42887 1.20616 1.00540 0.93998 1.05562 1.22999 0.89552
0.93383 0.93121 1.66447 1.32760 0.97822 1.22570 1.19432 0.94129
0.88063 0.98110 1.19652 0.97759 0.94246 1.02940 1.20838 0.97645
0.88617 0.93239 1.70463 1.28008 0.99395 1.26724 1.26654 0.83061
1.01112 0.88093 1.45446 1.25719 1.04410 1.41771 1.22417 0.84376
1.00080 0.99653 1.20837 0.84241 0.95317 0.95153 1.44257 1.02098
1.65546 1.19887 1.19381 0.95439 1.35206 0.86241 0.90551 1.25658
0.98839 1.01249 0.98883 1.70144 1.25993 1.46076 1.16007 0.85658
0.78137 0.79302 0.79776 1.20814 1.23535 1.19701 0.92804 0.90593
0.94836 0.88972 0.91564 0.89310 0.90767 0.75442 0.78942 0.84479
0.70384 0.88837 0.90056 0.85292 0.98407 0.93706 0.94952
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.21 7.96 71.98 0.57 -3.64 16
2 C 0.15 5.60 3.49 44.97 0.16 5.76 16
3 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16
4 C -0.12 -3.17 5.21 30.68 0.16 -3.01 16
5 C -0.11 -3.03 5.59 30.62 0.17 -2.86 16
6 C 0.13 4.78 2.81 45.07 0.13 4.90 16
7 H 0.07 2.68 7.58 -2.38 -0.02 2.66 16
8 N -0.68 -23.57 4.87 -445.20 -2.17 -25.74 16
9 C 0.56 22.35 7.74 86.74 0.67 23.03 16
10 O -0.58 -28.27 16.06 -3.91 -0.06 -28.33 16
11 C -0.20 -6.85 5.89 -20.01 -0.12 -6.97 16
12 C 0.18 5.08 10.69 85.18 0.91 5.99 16
13 N -0.48 -13.61 10.36 -191.75 -1.99 -15.60 16
14 C 0.24 6.61 7.99 133.91 1.07 7.68 16
15 C -0.03 -0.85 7.23 39.46 0.29 -0.56 16
16 C 0.02 0.87 9.75 22.92 0.22 1.09 16
17 N -0.53 -14.41 11.29 -191.93 -2.17 -16.58 16
18 C 0.30 4.74 12.50 180.03 2.25 6.99 16
19 N -0.48 -8.54 3.19 -549.34 -1.75 -10.30 16
20 C 0.07 0.56 11.18 127.77 1.43 1.99 16
21 C 0.17 8.41 4.88 86.36 0.42 8.83 16
22 N -0.59 -27.95 2.90 -675.24 -1.96 -29.91 16
23 C -0.23 -12.26 8.57 84.03 0.72 -11.54 16
24 H 0.08 3.85 6.24 -2.91 -0.02 3.83 16
25 C -0.05 -2.96 4.94 84.86 0.42 -2.54 16
26 N -0.93 -58.25 11.23 21.65 0.24 -58.01 16
27 Si 0.94 47.35 29.58 68.60 2.03 49.38 16
28 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16
29 H -0.31 -16.26 7.11 99.48 0.71 -15.55 16
30 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16
31 H 0.05 1.73 7.43 -2.39 -0.02 1.71 16
32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16
33 H 0.03 1.26 7.63 -2.39 -0.02 1.24 16
34 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16
35 H 0.07 1.63 6.40 -2.39 -0.02 1.61 16
36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16
37 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16
38 H 0.41 11.56 4.81 -92.71 -0.45 11.11 16
39 H 0.19 4.24 6.39 -2.91 -0.02 4.22 16
40 H 0.14 5.14 7.72 -2.91 -0.02 5.12 16
41 H 0.28 0.66 8.06 -2.91 -0.02 0.64 16
42 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16
43 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16
44 H 0.13 -0.01 8.14 -2.39 -0.02 -0.03 16
45 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16
46 H 0.04 2.67 6.15 -2.39 -0.01 2.65 16
47 H 0.24 14.98 8.31 -92.70 -0.77 14.21 16
Total: -1.00 -84.83 377.22 2.21 -82.63
By element:
Atomic # 1 Polarization: 16.74 SS G_CDS: 0.56 Total: 17.31 kcal
Atomic # 6 Polarization: 25.68 SS G_CDS: 9.47 Total: 35.15 kcal
Atomic # 7 Polarization: -146.34 SS G_CDS: -9.79 Total: -156.13 kcal
Atomic # 8 Polarization: -28.27 SS G_CDS: -0.06 Total: -28.33 kcal
Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal
Total: -84.83 2.21 -82.63 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001071735633.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 142.005 kcal
(2) G-P(sol) polarization free energy of solvation -84.834 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.171 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.206 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.628 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.377 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.26 seconds