Wall clock time and date at job start Sat Apr 11 2020 06:59:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09003 * 109.58192 * 2 1
4 4 C 1.53199 * 109.58794 * 239.72153 * 2 1 3
5 5 C 1.53041 * 109.31144 * 185.57702 * 4 2 1
6 6 C 1.53037 * 109.53874 * 61.36213 * 5 4 2
7 7 H 1.09003 * 109.49423 * 58.61664 * 6 5 4
8 8 N 1.46496 * 109.49907 * 178.68029 * 6 5 4
9 9 C 1.34771 * 120.00380 * 205.00394 * 8 6 5
10 10 O 1.21539 * 120.00092 * 359.97438 * 9 8 6
11 11 C 1.47974 * 120.00125 * 179.97438 * 9 8 6
12 12 C 1.39731 * 119.42880 * 179.97438 * 11 9 8
13 13 C 1.36990 * 119.59943 * 180.02562 * 12 11 9
14 14 C 1.39894 * 118.36146 * 359.97438 * 13 12 11
15 15 N 1.35433 * 133.81187 * 180.02562 * 14 13 12
16 16 C 1.30219 * 109.57416 * 179.72548 * 15 14 13
17 17 N 1.35993 * 110.18201 * 0.45140 * 16 15 14
18 18 C 1.46497 * 126.29473 * 179.81617 * 17 16 15
19 19 C 1.37942 * 107.41411 * 359.55345 * 17 16 15
20 20 N 1.31886 * 133.83370 * 180.28554 * 19 17 16
21 21 C 1.53193 * 109.31593 * 298.63371 * 6 5 4
22 22 N 1.46925 * 108.77351 * 54.63628 * 21 6 5
23 23 C 1.36937 * 120.63422 * 126.37080 * 22 21 6
24 24 H 1.07997 * 120.00376 * 209.56080 * 23 22 21
25 25 C 1.38810 * 119.99523 * 29.56201 * 23 22 21
26 26 N 1.31613 * 120.00570 * 16.10618 * 25 23 22
27 27 Si 1.86807 * 119.99821 * 196.11228 * 25 23 22
28 28 H 1.48504 * 109.47382 * 94.01764 * 27 25 23
29 29 H 1.48497 * 109.47097 * 214.02249 * 27 25 23
30 30 H 1.48507 * 109.46910 * 334.02180 * 27 25 23
31 31 H 1.08999 * 109.46936 * 180.27815 * 1 2 3
32 32 H 1.09001 * 109.47524 * 300.27656 * 1 2 3
33 33 H 1.09000 * 109.47189 * 60.28248 * 1 2 3
34 34 H 1.08999 * 109.49288 * 65.62106 * 4 2 1
35 35 H 1.08996 * 109.49380 * 305.52714 * 4 2 1
36 36 H 1.08994 * 109.45798 * 301.34110 * 5 4 2
37 37 H 1.08997 * 109.44549 * 181.37942 * 5 4 2
38 38 H 0.97000 * 119.99843 * 25.00023 * 8 6 5
39 39 H 1.08001 * 120.19978 * 359.97438 * 12 11 9
40 40 H 1.08002 * 120.82089 * 179.97438 * 13 12 11
41 41 H 1.08003 * 124.90946 * 180.26493 * 16 15 14
42 42 H 1.08997 * 109.47129 * 269.68993 * 18 17 16
43 43 H 1.09001 * 109.46967 * 29.68964 * 18 17 16
44 44 H 1.09003 * 109.47041 * 149.69049 * 18 17 16
45 45 H 1.08993 * 109.58441 * 174.41714 * 21 6 5
46 46 H 1.08996 * 109.58817 * 294.85230 * 21 6 5
47 47 H 0.96998 * 120.00331 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8953 1.0270 0.0000
4 6 2.0436 -0.7277 -1.2464
5 6 3.5675 -0.8464 -1.1713
6 6 3.9569 -1.6657 0.0613
7 1 3.4988 -2.6529 0.0014
8 7 5.4142 -1.8054 0.1151
9 6 5.9677 -2.8490 0.7639
10 8 5.2578 -3.6741 1.3046
11 6 7.4397 -2.9904 0.8178
12 6 8.0007 -4.0768 1.4941
13 6 9.3631 -4.2108 1.5466
14 6 10.1509 -3.2437 0.9132
15 7 11.4862 -3.0692 0.7697
16 6 11.7131 -1.9925 0.0734
17 7 10.5385 -1.3984 -0.2683
18 6 10.3837 -0.1670 -1.0467
19 6 9.5194 -2.1718 0.2477
20 7 8.2037 -2.0835 0.2232
21 6 3.4651 -0.9486 1.3225
22 7 2.0226 -0.7011 1.1936
23 6 1.1536 -1.1163 2.1671
24 1 0.1384 -1.3789 1.9086
25 6 1.5777 -1.1997 3.4862
26 7 2.6846 -0.5944 3.8612
27 14 0.5774 -2.1713 4.7292
28 1 1.1098 -3.5546 4.8204
29 1 0.6695 -1.5166 6.0589
30 1 -0.8425 -2.2150 4.2962
31 1 -0.3633 -1.0277 0.0050
32 1 -0.3634 0.5181 0.8875
33 1 -0.3633 0.5094 -0.8925
34 1 1.7659 -0.1640 -2.1370
35 1 1.6030 -1.7236 -1.2936
36 1 4.0061 0.1488 -1.0992
37 1 3.9376 -1.3421 -2.0687
38 1 5.9809 -1.1467 -0.3162
39 1 7.3642 -4.8060 1.9732
40 1 9.8177 -5.0425 2.0642
41 1 12.6927 -1.6229 -0.1918
42 1 10.3664 0.6892 -0.3724
43 1 11.2195 -0.0674 -1.7391
44 1 9.4499 -0.2067 -1.6075
45 1 3.6518 -1.5746 2.1950
46 1 3.9902 0.0003 1.4317
47 1 2.9807 -0.6524 4.7831
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001071825474.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:59:02
Heat of formation + Delta-G solvation = 80.695055 kcal
Electronic energy + Delta-G solvation = -30086.890194 eV
Core-core repulsion = 26078.458323 eV
Total energy + Delta-G solvation = -4008.431872 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 3.26 seconds
Orbital eigenvalues (eV)
-42.58578 -39.82656 -38.26803 -37.29581 -34.84880 -34.39448 -32.79841 -32.11335
-30.91425 -29.96602 -29.62270 -27.47601 -26.17334 -25.18557 -24.50537 -23.21010
-22.23424 -21.15796 -20.96380 -20.10589 -19.31496 -18.08735 -17.85372 -17.16851
-16.44026 -16.36290 -15.58631 -15.21167 -14.91632 -14.75840 -14.50743 -14.03223
-13.81619 -13.73552 -13.61160 -13.39914 -13.33021 -13.14353 -12.89982 -12.71198
-12.37113 -12.33426 -11.82525 -11.42642 -11.23970 -11.09461 -11.06204 -10.85347
-10.68932 -10.50835 -10.36696 -10.22442 -9.99816 -9.90817 -9.61693 -9.42209
-9.27793 -8.95940 -8.74850 -8.46628 -8.37701 -6.57537 -5.70319 -3.14882
0.31893 1.08398 2.00200 2.33498 3.07464 3.38053 3.46572 3.52744
3.53798 3.78352 3.90477 3.96942 4.25447 4.54247 4.58737 4.74908
4.79859 4.88970 5.04491 5.15861 5.37575 5.39089 5.40483 5.51703
5.60561 5.67863 5.72043 5.91660 5.94499 5.99756 6.14097 6.30117
6.32439 6.38336 6.41977 6.47881 6.52820 6.58186 6.65883 6.77159
6.95518 7.07485 7.15661 7.33743 7.40039 7.48487 7.76690 7.89848
7.98053 8.53128 8.59115 9.28213 9.92641 10.48220 11.37824
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.013894 B = 0.002995 C = 0.002654
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2014.774001 B = 9346.200945 C =10548.888414
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.165 3.835
3 H 0.025 0.975
4 C -0.126 4.126
5 C -0.116 4.116
6 C 0.114 3.886
7 H 0.084 0.916
8 N -0.698 5.698
9 C 0.568 3.432
10 O -0.520 6.520
11 C 0.132 3.868
12 C -0.125 4.125
13 C -0.027 4.027
14 C 0.018 3.982
15 N -0.491 5.491
16 C 0.277 3.723
17 N -0.485 5.485
18 C 0.080 3.920
19 C 0.234 3.766
20 N -0.454 5.454
21 C 0.169 3.831
22 N -0.583 5.583
23 C -0.254 4.254
24 H 0.071 0.929
25 C 0.007 3.993
26 N -0.899 5.899
27 Si 0.899 3.101
28 H -0.286 1.286
29 H -0.292 1.292
30 H -0.279 1.279
31 H 0.053 0.947
32 H 0.061 0.939
33 H 0.037 0.963
34 H 0.054 0.946
35 H 0.061 0.939
36 H 0.059 0.941
37 H 0.051 0.949
38 H 0.401 0.599
39 H 0.159 0.841
40 H 0.148 0.852
41 H 0.222 0.778
42 H 0.078 0.922
43 H 0.089 0.911
44 H 0.091 0.909
45 H 0.093 0.907
46 H 0.018 0.982
47 H 0.252 0.748
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.061 0.326 -12.634 21.232
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.058 3.942
3 H 0.042 0.958
4 C -0.166 4.166
5 C -0.154 4.154
6 C 0.009 3.991
7 H 0.102 0.898
8 N -0.348 5.348
9 C 0.351 3.649
10 O -0.394 6.394
11 C -0.017 4.017
12 C -0.148 4.148
13 C -0.055 4.055
14 C -0.104 4.104
15 N -0.211 5.211
16 C -0.010 4.010
17 N -0.177 5.177
18 C -0.062 4.062
19 C -0.003 4.003
20 N -0.170 5.170
21 C 0.042 3.958
22 N -0.306 5.306
23 C -0.383 4.383
24 H 0.088 0.912
25 C -0.192 4.192
26 N -0.543 5.543
27 Si 0.729 3.271
28 H -0.213 1.213
29 H -0.219 1.219
30 H -0.204 1.204
31 H 0.072 0.928
32 H 0.080 0.920
33 H 0.056 0.944
34 H 0.073 0.927
35 H 0.080 0.920
36 H 0.077 0.923
37 H 0.069 0.931
38 H 0.236 0.764
39 H 0.177 0.823
40 H 0.166 0.834
41 H 0.239 0.761
42 H 0.097 0.903
43 H 0.108 0.892
44 H 0.110 0.890
45 H 0.111 0.889
46 H 0.036 0.964
47 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges 16.774 0.071 -12.262 20.778
hybrid contribution -0.074 -0.038 0.532 0.539
sum 16.700 0.032 -11.730 20.408
Atomic orbital electron populations
1.21799 0.95995 1.01440 1.00132 1.20490 0.93067 0.93540 0.87078
0.95787 1.22049 0.94246 1.01354 0.98912 1.21670 0.97393 0.99656
0.96660 1.22080 0.77443 1.01077 0.98475 0.89764 1.45928 1.08662
1.25993 1.54169 1.17640 0.85206 0.82420 0.79673 1.90851 1.61205
1.42405 1.44965 1.21157 0.93746 0.91282 0.95562 1.21631 0.94845
0.98916 0.99436 1.20455 0.91842 0.97039 0.96159 1.19835 0.90924
0.97249 1.02365 1.70427 1.14368 1.17099 1.19162 1.25472 0.90780
0.89992 0.94716 1.45037 1.04964 1.22524 1.45224 1.22063 1.04822
0.83559 0.95708 1.18861 0.88399 0.93084 0.99941 1.66188 1.02895
1.28188 1.19681 1.21064 0.83599 0.96930 0.94198 1.44022 1.02592
1.64606 1.19397 1.19148 0.94986 1.38129 0.86042 0.91178 1.25078
0.97836 0.99264 0.97020 1.70010 1.24352 1.43304 1.16666 0.86325
0.79684 0.80191 0.80856 1.21292 1.21888 1.20404 0.92758 0.92025
0.94384 0.92685 0.92016 0.92268 0.93052 0.76423 0.82331 0.83419
0.76149 0.90320 0.89201 0.89042 0.88858 0.96441 0.93749
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.56 7.95 37.16 0.30 -2.27 16
2 C 0.16 3.39 3.50 -67.60 -0.24 3.15 16
3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
4 C -0.13 -2.15 5.37 -26.61 -0.14 -2.29 16
5 C -0.12 -1.90 5.35 -26.69 -0.14 -2.04 16
6 C 0.11 2.26 2.60 -67.81 -0.18 2.09 16
7 H 0.08 1.86 7.58 -51.93 -0.39 1.47 16
8 N -0.70 -12.26 5.07 -54.60 -0.28 -12.53 16
9 C 0.57 10.61 7.77 -12.27 -0.10 10.51 16
10 O -0.52 -11.53 15.95 5.33 0.09 -11.45 16
11 C 0.13 2.09 6.74 -82.97 -0.56 1.53 16
12 C -0.12 -1.74 9.55 -39.48 -0.38 -2.12 16
13 C -0.03 -0.34 10.16 -39.41 -0.40 -0.74 16
14 C 0.02 0.23 7.25 -84.57 -0.61 -0.38 16
15 N -0.49 -5.83 11.27 -11.93 -0.13 -5.96 16
16 C 0.28 2.24 12.49 -89.73 -1.12 1.12 16
17 N -0.48 -4.51 3.20 -124.97 -0.40 -4.91 16
18 C 0.08 0.43 11.19 59.85 0.67 1.10 16
19 C 0.23 3.09 8.01 -155.73 -1.25 1.84 16
20 N -0.45 -6.63 9.54 -8.82 -0.08 -6.72 16
21 C 0.17 4.14 4.87 -3.71 -0.02 4.12 16
22 N -0.58 -14.58 2.99 -164.78 -0.49 -15.08 16
23 C -0.25 -6.97 8.58 -15.06 -0.13 -7.10 16
24 H 0.07 1.88 6.22 -52.49 -0.33 1.55 16
25 C 0.01 0.20 4.92 -17.43 -0.09 0.12 16
26 N -0.90 -26.88 11.25 55.49 0.62 -26.25 16
27 Si 0.90 22.50 29.58 -169.99 -5.03 17.47 16
28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
29 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16
30 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
31 H 0.05 1.04 7.40 -51.93 -0.38 0.66 16
32 H 0.06 1.25 7.66 -51.93 -0.40 0.86 16
33 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16
34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16
38 H 0.40 6.11 7.91 -40.82 -0.32 5.79 16
39 H 0.16 2.10 7.61 -52.49 -0.40 1.70 16
40 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16
41 H 0.22 0.59 8.06 -52.48 -0.42 0.16 16
42 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16
43 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16
44 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16
45 H 0.09 2.69 6.14 -51.93 -0.32 2.37 16
46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16
47 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16
LS Contribution 382.85 15.07 5.77 5.77
Total: -1.00 -35.50 382.85 -11.07 -46.57
By element:
Atomic # 1 Polarization: 11.17 SS G_CDS: -6.75 Total: 4.42 kcal
Atomic # 6 Polarization: 13.03 SS G_CDS: -4.38 Total: 8.65 kcal
Atomic # 7 Polarization: -70.68 SS G_CDS: -0.76 Total: -71.45 kcal
Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.45 kcal
Atomic # 14 Polarization: 22.50 SS G_CDS: -5.03 Total: 17.47 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -35.50 -11.07 -46.57 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001071825474.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 127.269 kcal
(2) G-P(sol) polarization free energy of solvation -35.504 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.765 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.070 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.574 kcal
(6) G-S(sol) free energy of system = (1) + (5) 80.695 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 3.26 seconds