Wall clock time and date at job start Sat Apr 11 2020 06:58:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08999 * 110.63657 * 2 1
4 4 C 1.54318 * 110.87290 * 236.75089 * 2 1 3
5 5 N 1.47026 * 107.27361 * 219.37242 * 4 2 1
6 6 C 1.36936 * 125.65088 * 178.99500 * 5 4 2
7 7 H 1.08004 * 119.99743 * 179.97438 * 6 5 4
8 8 C 1.38804 * 119.99948 * 359.97438 * 6 5 4
9 9 N 1.31623 * 120.00125 * 359.97438 * 8 6 5
10 10 Si 1.86801 * 119.99818 * 180.02562 * 8 6 5
11 11 H 1.48492 * 109.47281 * 60.00098 * 10 8 6
12 12 H 1.48509 * 109.46899 * 179.97438 * 10 8 6
13 13 H 1.48497 * 109.47191 * 299.99703 * 10 8 6
14 14 C 1.47471 * 108.71889 * 358.97332 * 5 4 2
15 15 C 1.54911 * 104.81223 * 24.06951 * 14 5 4
16 16 H 1.09012 * 111.00133 * 81.13466 * 15 14 5
17 17 C 1.52996 * 111.00508 * 204.94851 * 15 14 5
18 18 C 1.53007 * 109.47138 * 290.41881 * 17 15 14
19 19 N 1.46500 * 109.46832 * 180.02562 * 18 17 15
20 20 C 1.34779 * 119.99475 * 180.02562 * 19 18 17
21 21 O 1.21581 * 120.00402 * 359.97438 * 20 19 18
22 22 C 1.47541 * 119.99723 * 179.97438 * 20 19 18
23 23 C 1.39413 * 120.75448 * 0.02562 * 22 20 19
24 24 N 1.31913 * 121.01782 * 180.02562 * 23 22 20
25 25 C 1.31797 * 122.59898 * 359.97438 * 24 23 22
26 26 C 1.39436 * 120.63004 * 0.26162 * 25 24 23
27 27 N 1.35710 * 134.42741 * 180.40356 * 26 25 24
28 28 C 1.30124 * 109.50020 * 179.54927 * 27 26 25
29 29 N 1.36257 * 110.06054 * 359.75668 * 28 27 26
30 30 H 0.97001 * 126.29540 * 179.97438 * 29 28 27
31 31 C 1.36918 * 107.40351 * 0.02562 * 29 28 27
32 32 H 1.08998 * 109.46962 * 296.85574 * 1 2 3
33 33 H 1.08992 * 109.46994 * 56.86447 * 1 2 3
34 34 H 1.08999 * 109.46630 * 176.86158 * 1 2 3
35 35 H 1.08998 * 109.88386 * 338.78678 * 4 2 1
36 36 H 1.08997 * 109.88737 * 99.95550 * 4 2 1
37 37 H 0.97002 * 119.99771 * 179.97438 * 9 8 6
38 38 H 1.09001 * 110.35058 * 265.25348 * 14 5 4
39 39 H 1.08997 * 110.40271 * 142.91720 * 14 5 4
40 40 H 1.09001 * 109.47022 * 170.42361 * 17 15 14
41 41 H 1.08998 * 109.47077 * 50.41918 * 17 15 14
42 42 H 1.08993 * 109.46928 * 60.00045 * 18 17 15
43 43 H 1.08998 * 109.47167 * 299.99982 * 18 17 15
44 44 H 0.96994 * 120.00321 * 359.97438 * 19 18 17
45 45 H 1.08001 * 119.49016 * 359.97438 * 23 22 20
46 46 H 1.08002 * 119.68130 * 179.97438 * 25 24 23
47 47 H 1.08008 * 124.96623 * 179.74071 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9142 1.0201 0.0000
4 6 2.0799 -0.7906 -1.2059
5 7 3.2495 -1.5470 -0.7353
6 6 4.0128 -2.3916 -1.4964
7 1 4.8558 -2.9027 -1.0554
8 6 3.7030 -2.5907 -2.8347
9 7 2.6754 -1.9681 -3.3721
10 14 4.7438 -3.7433 -3.8728
11 1 4.7038 -5.1079 -3.2885
12 1 4.2081 -3.7824 -5.2574
13 1 6.1465 -3.2565 -3.8979
14 6 3.4652 -1.2455 0.6920
15 6 2.0790 -0.7933 1.2152
16 1 1.4465 -1.6525 1.4388
17 6 2.2237 0.1113 2.4406
18 6 2.7232 -0.7145 3.6279
19 7 2.8611 0.1516 4.8014
20 6 3.2904 -0.3620 5.9712
21 8 3.5626 -1.5441 6.0527
22 6 3.4298 0.5103 7.1530
23 6 3.1215 1.8678 7.0774
24 7 3.2448 2.6525 8.1305
25 6 3.6596 2.2104 9.3008
26 6 3.9967 0.8686 9.4745
27 7 4.4357 0.1275 10.5231
28 6 4.5935 -1.1079 10.1461
29 7 4.2608 -1.2415 8.8315
30 1 4.2915 -2.0599 8.3118
31 6 3.8762 -0.0078 8.3790
32 1 -0.3633 0.4642 0.9168
33 1 -0.3633 0.5617 -0.8605
34 1 -0.3632 -1.0261 -0.0563
35 1 1.3191 -1.4773 -1.5769
36 1 2.3775 -0.1016 -1.9963
37 1 2.4592 -2.1070 -4.3075
38 1 4.1934 -0.4421 0.8039
39 1 3.7985 -2.1373 1.2227
40 1 1.2562 0.5500 2.6846
41 1 2.9384 0.9052 2.2238
42 1 3.6906 -1.1532 3.3840
43 1 2.0085 -1.5083 3.8447
44 1 2.6443 1.0948 4.7363
45 1 2.7772 2.2835 6.1419
46 1 3.7435 2.8950 10.1319
47 1 4.9380 -1.9100 10.7821
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001103009729.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:58:03
Heat of formation + Delta-G solvation = 61.311603 kcal
Electronic energy + Delta-G solvation = -28813.784867 eV
Core-core repulsion = 24804.512466 eV
Total energy + Delta-G solvation = -4009.272401 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-42.89374 -40.06138 -38.74530 -38.16989 -35.46113 -33.76742 -33.30162 -31.97928
-31.08403 -30.68202 -30.22558 -27.05549 -25.77399 -25.10761 -24.04321 -23.53973
-22.64642 -21.99305 -20.98306 -19.83988 -19.26531 -19.02366 -18.12210 -17.65440
-16.86099 -16.18497 -16.13988 -15.69862 -15.57423 -15.28777 -14.99072 -14.51550
-14.35634 -14.11334 -13.96150 -13.63506 -13.40819 -13.11625 -13.00492 -12.60135
-12.37297 -11.97756 -11.73258 -11.45390 -11.35420 -11.24249 -11.11040 -10.93450
-10.82210 -10.75634 -10.73551 -10.09400 -9.96548 -9.90796 -9.84786 -9.66352
-9.60623 -9.51026 -9.31578 -8.86775 -8.58641 -6.80945 -5.69625 -3.02862
-0.09973 0.89428 2.00006 2.38374 2.67314 2.81014 3.41010 3.43667
3.45161 3.46355 3.58586 3.85752 4.03034 4.35432 4.48336 4.50875
4.63078 4.72785 4.83787 5.03917 5.10782 5.22691 5.43445 5.44411
5.50078 5.58159 5.63730 5.67997 5.71470 5.85960 5.91030 5.93199
6.04919 6.17029 6.21317 6.23343 6.32862 6.50034 6.62115 6.64170
6.73776 6.78079 6.99197 7.11397 7.16723 7.44480 7.58226 7.65979
7.83443 7.85259 8.28229 9.24172 9.84540 10.50938 11.41889
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.019245 B = 0.001959 C = 0.001830
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1454.576363 B =14290.255130 C =15298.976880
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.114 4.114
3 H 0.064 0.936
4 C 0.183 3.817
5 N -0.607 5.607
6 C -0.227 4.227
7 H 0.076 0.924
8 C -0.009 4.009
9 N -0.922 5.922
10 Si 0.911 3.089
11 H -0.285 1.285
12 H -0.290 1.290
13 H -0.285 1.285
14 C 0.139 3.861
15 C -0.095 4.095
16 H 0.076 0.924
17 C -0.117 4.117
18 C 0.118 3.882
19 N -0.718 5.718
20 C 0.565 3.435
21 O -0.548 6.548
22 C -0.178 4.178
23 C 0.140 3.860
24 N -0.489 5.489
25 C 0.200 3.800
26 C -0.018 4.018
27 N -0.478 5.478
28 C 0.267 3.733
29 N -0.578 5.578
30 H 0.439 0.561
31 C 0.129 3.871
32 H 0.043 0.957
33 H 0.051 0.949
34 H 0.053 0.947
35 H 0.047 0.953
36 H 0.040 0.960
37 H 0.252 0.748
38 H 0.017 0.983
39 H 0.036 0.964
40 H 0.067 0.933
41 H 0.070 0.930
42 H 0.075 0.925
43 H 0.070 0.930
44 H 0.400 0.600
45 H 0.167 0.833
46 H 0.172 0.828
47 H 0.225 0.775
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.312 7.184 25.552 26.575
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.134 4.134
3 H 0.082 0.918
4 C 0.059 3.941
5 N -0.333 5.333
6 C -0.356 4.356
7 H 0.094 0.906
8 C -0.206 4.206
9 N -0.570 5.570
10 Si 0.742 3.258
11 H -0.212 1.212
12 H -0.216 1.216
13 H -0.212 1.212
14 C 0.013 3.987
15 C -0.115 4.115
16 H 0.095 0.905
17 C -0.156 4.156
18 C -0.005 4.005
19 N -0.368 5.368
20 C 0.352 3.648
21 O -0.427 6.427
22 C -0.187 4.187
23 C -0.012 4.012
24 N -0.198 5.198
25 C 0.035 3.965
26 C -0.139 4.139
27 N -0.198 5.198
28 C -0.021 4.021
29 N -0.189 5.189
30 H 0.281 0.719
31 C 0.007 3.993
32 H 0.062 0.938
33 H 0.070 0.930
34 H 0.072 0.928
35 H 0.065 0.935
36 H 0.058 0.942
37 H 0.062 0.938
38 H 0.035 0.965
39 H 0.055 0.945
40 H 0.085 0.915
41 H 0.088 0.912
42 H 0.094 0.906
43 H 0.089 0.911
44 H 0.236 0.764
45 H 0.184 0.816
46 H 0.189 0.811
47 H 0.241 0.759
Dipole moment (debyes) X Y Z Total
from point charges -1.199 7.476 26.000 27.080
hybrid contribution 0.569 -1.890 -1.637 2.565
sum -0.630 5.585 24.362 25.002
Atomic orbital electron populations
1.21676 0.95541 1.01551 1.00298 1.22483 0.94956 0.98959 0.96966
0.91750 1.21204 0.89037 0.93085 0.90795 1.44478 1.32406 1.51698
1.04741 1.19015 1.07412 1.17871 0.91289 0.90592 1.24798 0.98456
1.00391 0.96911 1.69958 1.28736 1.45728 1.12594 0.86206 0.79505
0.80555 0.79542 1.21207 1.21611 1.21210 1.21623 0.93298 0.97029
0.86750 1.22327 0.98914 0.97568 0.92700 0.90533 1.21764 1.01301
0.98656 0.93846 1.21574 1.02439 0.93145 0.83319 1.45960 1.67183
1.13347 1.10333 1.17895 0.77202 0.87105 0.82648 1.90729 1.50956
1.16237 1.84750 1.19988 1.10481 0.95836 0.92371 1.22795 0.93208
0.87660 0.97535 1.67721 1.15406 1.37651 0.99061 1.22366 0.89088
0.90228 0.94842 1.20210 1.07367 0.96178 0.90162 1.70503 1.19380
1.01916 1.27987 1.25706 0.97290 0.96455 0.82683 1.43264 1.53541
1.10265 1.11806 0.71913 1.18696 0.98800 0.86792 0.95031 0.93809
0.92966 0.92784 0.93457 0.94230 0.93763 0.96541 0.94539 0.91451
0.91151 0.90639 0.91145 0.76445 0.81594 0.81107 0.75850
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.00 9.17 37.16 0.34 -1.65 16
2 C -0.11 -2.00 3.01 -88.79 -0.27 -2.27 16
3 H 0.06 1.08 8.04 -51.93 -0.42 0.66 16
4 C 0.18 4.38 4.97 -3.06 -0.02 4.37 16
5 N -0.61 -15.48 3.40 -170.04 -0.58 -16.06 16
6 C -0.23 -6.39 10.28 -15.06 -0.15 -6.55 16
7 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16
8 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16
9 N -0.92 -27.19 10.31 55.49 0.57 -26.61 16
10 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16
11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
14 C 0.14 2.80 6.04 -2.50 -0.02 2.78 16
15 C -0.10 -1.52 2.48 -88.47 -0.22 -1.74 16
16 H 0.08 1.27 8.05 -51.92 -0.42 0.85 16
17 C -0.12 -1.35 4.84 -26.73 -0.13 -1.48 16
18 C 0.12 1.37 5.55 -4.04 -0.02 1.34 16
19 N -0.72 -6.90 5.51 -61.35 -0.34 -7.24 16
20 C 0.56 6.46 7.77 -12.47 -0.10 6.37 16
21 O -0.55 -7.82 15.52 5.29 0.08 -7.74 16
22 C -0.18 -1.78 5.89 -104.86 -0.62 -2.40 16
23 C 0.14 1.17 10.71 -17.08 -0.18 0.99 16
24 N -0.49 -4.48 10.30 -12.64 -0.13 -4.61 16
25 C 0.20 1.74 11.25 -17.12 -0.19 1.55 16
26 C -0.02 -0.18 7.27 -84.73 -0.62 -0.80 16
27 N -0.48 -4.47 11.28 -12.01 -0.14 -4.61 16
28 C 0.27 1.73 12.97 -89.57 -1.16 0.56 16
29 N -0.58 -4.70 6.02 -11.51 -0.07 -4.77 16
30 H 0.44 3.24 7.92 -40.82 -0.32 2.91 16
31 C 0.13 1.32 6.93 -83.82 -0.58 0.74 16
32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16
33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
34 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16
35 H 0.05 1.26 7.02 -51.93 -0.36 0.89 16
36 H 0.04 1.06 7.50 -51.93 -0.39 0.67 16
37 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16
38 H 0.02 0.33 7.96 -51.93 -0.41 -0.08 16
39 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16
40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16
41 H 0.07 0.79 8.03 -51.93 -0.42 0.37 16
42 H 0.08 1.01 7.59 -51.93 -0.39 0.62 16
43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
44 H 0.40 2.66 6.54 -40.82 -0.27 2.40 16
45 H 0.17 0.87 6.42 -52.49 -0.34 0.54 16
46 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16
47 H 0.23 0.32 8.06 -52.48 -0.42 -0.10 16
LS Contribution 383.90 15.07 5.79 5.79
Total: -1.00 -35.56 383.90 -10.53 -46.08
By element:
Atomic # 1 Polarization: 7.74 SS G_CDS: -6.66 Total: 1.08 kcal
Atomic # 6 Polarization: 5.47 SS G_CDS: -4.03 Total: 1.44 kcal
Atomic # 7 Polarization: -63.22 SS G_CDS: -0.68 Total: -63.90 kcal
Atomic # 8 Polarization: -7.82 SS G_CDS: 0.08 Total: -7.74 kcal
Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal
Total LS contribution 5.79 Total: 5.79 kcal
Total: -35.56 -10.53 -46.08 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001103009729.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 107.393 kcal
(2) G-P(sol) polarization free energy of solvation -35.556 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.837 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.525 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.081 kcal
(6) G-S(sol) free energy of system = (1) + (5) 61.312 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds