Wall clock time and date at job start Sat Apr 11 2020 06:58:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08999 * 110.63657 * 2 1
4 4 C 1.54318 * 110.87290 * 236.75089 * 2 1 3
5 5 N 1.47026 * 107.27361 * 219.37242 * 4 2 1
6 6 C 1.36936 * 125.65088 * 178.99500 * 5 4 2
7 7 H 1.08004 * 119.99743 * 179.97438 * 6 5 4
8 8 C 1.38804 * 119.99948 * 359.97438 * 6 5 4
9 9 N 1.31623 * 120.00125 * 359.97438 * 8 6 5
10 10 Si 1.86801 * 119.99818 * 180.02562 * 8 6 5
11 11 H 1.48492 * 109.47281 * 60.00098 * 10 8 6
12 12 H 1.48509 * 109.46899 * 179.97438 * 10 8 6
13 13 H 1.48497 * 109.47191 * 299.99703 * 10 8 6
14 14 C 1.47471 * 108.71889 * 358.97332 * 5 4 2
15 15 C 1.54911 * 104.81223 * 24.06951 * 14 5 4
16 16 H 1.09012 * 111.00133 * 81.13466 * 15 14 5
17 17 C 1.52996 * 111.00508 * 204.94851 * 15 14 5
18 18 C 1.53007 * 109.47138 * 290.41881 * 17 15 14
19 19 N 1.46500 * 109.46832 * 180.02562 * 18 17 15
20 20 C 1.34779 * 119.99475 * 180.02562 * 19 18 17
21 21 O 1.21581 * 120.00402 * 359.97438 * 20 19 18
22 22 C 1.47541 * 119.99723 * 179.97438 * 20 19 18
23 23 C 1.39413 * 120.75448 * 0.02562 * 22 20 19
24 24 N 1.31913 * 121.01782 * 180.02562 * 23 22 20
25 25 C 1.31797 * 122.59898 * 359.97438 * 24 23 22
26 26 C 1.39436 * 120.63004 * 0.26162 * 25 24 23
27 27 N 1.35710 * 134.42741 * 180.40356 * 26 25 24
28 28 C 1.30124 * 109.50020 * 179.54927 * 27 26 25
29 29 N 1.36257 * 110.06054 * 359.75668 * 28 27 26
30 30 H 0.97001 * 126.29540 * 179.97438 * 29 28 27
31 31 C 1.36918 * 107.40351 * 0.02562 * 29 28 27
32 32 H 1.08998 * 109.46962 * 296.85574 * 1 2 3
33 33 H 1.08992 * 109.46994 * 56.86447 * 1 2 3
34 34 H 1.08999 * 109.46630 * 176.86158 * 1 2 3
35 35 H 1.08998 * 109.88386 * 338.78678 * 4 2 1
36 36 H 1.08997 * 109.88737 * 99.95550 * 4 2 1
37 37 H 0.97002 * 119.99771 * 179.97438 * 9 8 6
38 38 H 1.09001 * 110.35058 * 265.25348 * 14 5 4
39 39 H 1.08997 * 110.40271 * 142.91720 * 14 5 4
40 40 H 1.09001 * 109.47022 * 170.42361 * 17 15 14
41 41 H 1.08998 * 109.47077 * 50.41918 * 17 15 14
42 42 H 1.08993 * 109.46928 * 60.00045 * 18 17 15
43 43 H 1.08998 * 109.47167 * 299.99982 * 18 17 15
44 44 H 0.96994 * 120.00321 * 359.97438 * 19 18 17
45 45 H 1.08001 * 119.49016 * 359.97438 * 23 22 20
46 46 H 1.08002 * 119.68130 * 179.97438 * 25 24 23
47 47 H 1.08008 * 124.96623 * 179.74071 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9142 1.0201 0.0000
4 6 2.0799 -0.7906 -1.2059
5 7 3.2495 -1.5470 -0.7353
6 6 4.0128 -2.3916 -1.4964
7 1 4.8558 -2.9027 -1.0554
8 6 3.7030 -2.5907 -2.8347
9 7 2.6754 -1.9681 -3.3721
10 14 4.7438 -3.7433 -3.8728
11 1 4.7038 -5.1079 -3.2885
12 1 4.2081 -3.7824 -5.2574
13 1 6.1465 -3.2565 -3.8979
14 6 3.4652 -1.2455 0.6920
15 6 2.0790 -0.7933 1.2152
16 1 1.4465 -1.6525 1.4388
17 6 2.2237 0.1113 2.4406
18 6 2.7232 -0.7145 3.6279
19 7 2.8611 0.1516 4.8014
20 6 3.2904 -0.3620 5.9712
21 8 3.5626 -1.5441 6.0527
22 6 3.4298 0.5103 7.1530
23 6 3.1215 1.8678 7.0774
24 7 3.2448 2.6525 8.1305
25 6 3.6596 2.2104 9.3008
26 6 3.9967 0.8686 9.4745
27 7 4.4357 0.1275 10.5231
28 6 4.5935 -1.1079 10.1461
29 7 4.2608 -1.2415 8.8315
30 1 4.2915 -2.0599 8.3118
31 6 3.8762 -0.0078 8.3790
32 1 -0.3633 0.4642 0.9168
33 1 -0.3633 0.5617 -0.8605
34 1 -0.3632 -1.0261 -0.0563
35 1 1.3191 -1.4773 -1.5769
36 1 2.3775 -0.1016 -1.9963
37 1 2.4592 -2.1070 -4.3075
38 1 4.1934 -0.4421 0.8039
39 1 3.7985 -2.1373 1.2227
40 1 1.2562 0.5500 2.6846
41 1 2.9384 0.9052 2.2238
42 1 3.6906 -1.1532 3.3840
43 1 2.0085 -1.5083 3.8447
44 1 2.6443 1.0948 4.7363
45 1 2.7772 2.2835 6.1419
46 1 3.7435 2.8950 10.1319
47 1 4.9380 -1.9100 10.7821
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001103009729.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:58:02
Heat of formation + Delta-G solvation = 36.774791 kcal
Electronic energy + Delta-G solvation = -28814.848863 eV
Core-core repulsion = 24804.512466 eV
Total energy + Delta-G solvation = -4010.336397 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-43.50520 -40.90265 -39.75727 -39.34201 -36.55407 -35.04797 -34.39002 -32.92293
-32.51371 -31.96542 -30.97216 -28.49831 -27.46954 -26.12203 -25.24650 -24.22516
-23.63645 -23.03630 -21.83362 -21.36100 -20.68836 -19.66838 -18.88096 -18.80247
-18.33826 -17.06745 -16.99542 -16.82965 -16.36531 -16.33827 -15.93421 -15.89317
-15.64047 -15.15378 -15.06428 -14.80193 -14.43106 -14.16934 -14.08861 -13.80438
-13.64679 -13.40877 -13.32973 -12.92986 -12.77300 -12.69962 -12.41784 -12.21554
-12.01264 -11.95600 -11.81163 -11.71863 -11.45550 -11.38694 -11.22183 -11.08538
-10.70162 -10.63075 -10.34277 -10.12062 -9.50972 -8.88258 -7.85206 -5.20411
-0.74412 0.22822 1.36704 1.42935 1.46321 1.52613 1.82721 1.93811
1.99156 2.48423 2.75881 3.04711 3.23014 3.31939 3.44348 3.64979
3.72171 3.78599 3.85086 3.97080 4.04597 4.09290 4.19071 4.29390
4.36472 4.52094 4.56123 4.63747 4.74803 4.75777 4.82995 4.86148
5.02528 5.03304 5.09765 5.13302 5.19338 5.27749 5.31175 5.36433
5.42021 5.46868 5.56281 5.76545 5.84829 6.19249 6.21338 6.39780
6.54063 6.81261 7.04898 7.11182 7.79602 8.43717 9.24453
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.019245 B = 0.001959 C = 0.001830
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1454.576363 B =14290.255130 C =15298.976880
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.102 4.102
3 H 0.081 0.919
4 C 0.189 3.811
5 N -0.632 5.632
6 C -0.244 4.244
7 H 0.078 0.922
8 C -0.068 4.068
9 N -0.950 5.950
10 Si 0.977 3.023
11 H -0.278 1.278
12 H -0.293 1.293
13 H -0.277 1.277
14 C 0.132 3.868
15 C -0.079 4.079
16 H 0.072 0.928
17 C -0.102 4.102
18 C 0.125 3.875
19 N -0.703 5.703
20 C 0.564 3.436
21 O -0.583 6.583
22 C -0.193 4.193
23 C 0.148 3.852
24 N -0.500 5.500
25 C 0.199 3.801
26 C -0.035 4.035
27 N -0.507 5.507
28 C 0.280 3.720
29 N -0.581 5.581
30 H 0.441 0.559
31 C 0.107 3.893
32 H 0.084 0.916
33 H 0.050 0.950
34 H 0.039 0.961
35 H 0.009 0.991
36 H -0.002 1.002
37 H 0.246 0.754
38 H 0.024 0.976
39 H 0.032 0.968
40 H 0.100 0.900
41 H 0.082 0.918
42 H 0.054 0.946
43 H 0.063 0.937
44 H 0.417 0.583
45 H 0.197 0.803
46 H 0.193 0.807
47 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.514 8.267 27.663 28.912
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.121 4.121
3 H 0.099 0.901
4 C 0.064 3.936
5 N -0.359 5.359
6 C -0.373 4.373
7 H 0.096 0.904
8 C -0.261 4.261
9 N -0.599 5.599
10 Si 0.805 3.195
11 H -0.204 1.204
12 H -0.219 1.219
13 H -0.203 1.203
14 C 0.008 3.992
15 C -0.099 4.099
16 H 0.090 0.910
17 C -0.140 4.140
18 C 0.002 3.998
19 N -0.355 5.355
20 C 0.352 3.648
21 O -0.465 6.465
22 C -0.202 4.202
23 C -0.005 4.005
24 N -0.210 5.210
25 C 0.035 3.965
26 C -0.155 4.155
27 N -0.227 5.227
28 C -0.007 4.007
29 N -0.191 5.191
30 H 0.283 0.717
31 C -0.016 4.016
32 H 0.103 0.897
33 H 0.070 0.930
34 H 0.058 0.942
35 H 0.028 0.972
36 H 0.016 0.984
37 H 0.055 0.945
38 H 0.042 0.958
39 H 0.051 0.949
40 H 0.119 0.881
41 H 0.101 0.899
42 H 0.072 0.928
43 H 0.082 0.918
44 H 0.256 0.744
45 H 0.214 0.786
46 H 0.210 0.790
47 H 0.286 0.714
Dipole moment (debyes) X Y Z Total
from point charges -1.399 8.600 28.151 29.468
hybrid contribution 0.688 -2.248 -2.226 3.237
sum -0.712 6.352 25.925 26.701
Atomic orbital electron populations
1.21635 0.93198 1.01210 1.02401 1.22366 0.96759 0.98685 0.94282
0.90086 1.21006 0.87820 0.91931 0.92794 1.44849 1.32538 1.51474
1.06990 1.19411 1.07744 1.18122 0.92029 0.90415 1.25657 0.99929
1.02339 0.98212 1.70195 1.30266 1.47136 1.12320 0.85171 0.78078
0.78746 0.77463 1.20387 1.21899 1.20335 1.21854 0.96162 0.97120
0.84112 1.22192 0.95672 0.98061 0.93941 0.90999 1.21625 1.03525
0.97627 0.91202 1.21339 1.01122 0.93341 0.84047 1.45736 1.66528
1.13999 1.09209 1.18127 0.76609 0.86802 0.83274 1.90708 1.52614
1.17796 1.85347 1.19950 1.12097 0.96345 0.91799 1.23254 0.91834
0.86951 0.98417 1.67814 1.15984 1.37778 0.99401 1.22766 0.88067
0.90313 0.95391 1.20474 1.07952 0.96745 0.90375 1.70508 1.20866
1.03066 1.28244 1.26660 0.95006 0.96717 0.82294 1.43398 1.53450
1.09870 1.12414 0.71697 1.19030 0.99349 0.87734 0.95477 0.89711
0.93048 0.94168 0.97241 0.98361 0.94464 0.95804 0.94944 0.88140
0.89924 0.92794 0.91837 0.74435 0.78642 0.79030 0.71402
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.52 9.17 71.98 0.66 -2.86 16
2 C -0.10 -3.42 3.01 -9.61 -0.03 -3.45 16
3 H 0.08 2.49 8.04 -2.39 -0.02 2.47 16
4 C 0.19 9.36 4.97 86.73 0.43 9.79 16
5 N -0.63 -33.08 3.40 -691.88 -2.35 -35.43 16
6 C -0.24 -14.07 10.28 84.03 0.86 -13.20 16
7 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16
8 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16
9 N -0.95 -58.28 10.31 21.65 0.22 -58.06 16
10 Si 0.98 46.77 29.55 68.60 2.03 48.80 16
11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16
12 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16
13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16
14 C 0.13 5.29 6.04 86.85 0.52 5.81 16
15 C -0.08 -2.38 2.48 -9.40 -0.02 -2.40 16
16 H 0.07 2.27 8.05 -2.38 -0.02 2.25 16
17 C -0.10 -1.97 4.84 30.60 0.15 -1.83 16
18 C 0.12 2.62 5.55 86.38 0.48 3.10 16
19 N -0.70 -11.74 5.51 -466.27 -2.57 -14.31 16
20 C 0.56 12.18 7.77 86.70 0.67 12.86 16
21 O -0.58 -16.45 15.52 -3.97 -0.06 -16.51 16
22 C -0.19 -3.61 5.89 -20.02 -0.12 -3.73 16
23 C 0.15 2.15 10.71 84.96 0.91 3.06 16
24 N -0.50 -8.21 10.30 -193.92 -2.00 -10.21 16
25 C 0.20 3.19 11.25 84.99 0.96 4.15 16
26 C -0.03 -0.66 7.27 39.46 0.29 -0.38 16
27 N -0.51 -8.86 11.28 -191.90 -2.16 -11.03 16
28 C 0.28 3.16 12.97 179.98 2.34 5.50 16
29 N -0.58 -8.94 6.02 -190.33 -1.15 -10.09 16
30 H 0.44 6.31 7.92 -92.71 -0.73 5.57 16
31 C 0.11 2.10 6.93 39.50 0.27 2.38 16
32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16
33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16
34 H 0.04 1.22 8.07 -2.39 -0.02 1.20 16
35 H 0.01 0.52 7.02 -2.39 -0.02 0.51 16
36 H 0.00 -0.11 7.50 -2.39 -0.02 -0.12 16
37 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16
38 H 0.02 0.93 7.96 -2.39 -0.02 0.91 16
39 H 0.03 1.31 8.10 -2.39 -0.02 1.29 16
40 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16
41 H 0.08 1.49 8.03 -2.39 -0.02 1.47 16
42 H 0.05 1.39 7.59 -2.39 -0.02 1.37 16
43 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16
44 H 0.42 3.98 6.54 -92.71 -0.61 3.37 16
45 H 0.20 1.38 6.42 -2.91 -0.02 1.36 16
46 H 0.19 2.01 8.06 -2.91 -0.02 1.99 16
47 H 0.27 -0.02 8.06 -2.91 -0.02 -0.04 16
Total: -1.00 -81.88 383.90 0.48 -81.40
By element:
Atomic # 1 Polarization: 10.50 SS G_CDS: -0.32 Total: 10.17 kcal
Atomic # 6 Polarization: 6.42 SS G_CDS: 8.84 Total: 15.26 kcal
Atomic # 7 Polarization: -129.12 SS G_CDS: -10.00 Total: -139.12 kcal
Atomic # 8 Polarization: -16.45 SS G_CDS: -0.06 Total: -16.51 kcal
Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal
Total: -81.88 0.48 -81.40 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001103009729.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.176 kcal
(2) G-P(sol) polarization free energy of solvation -81.876 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.300 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.475 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.401 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.775 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds