Wall clock time and date at job start Sat Apr 11 2020 06:57:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09000 * 109.47659 * 2 1
4 4 C 1.53001 * 109.47434 * 120.00444 * 2 1 3
5 5 C 1.53001 * 109.47204 * 184.99751 * 4 2 1
6 6 H 1.08999 * 109.46935 * 304.99827 * 5 4 2
7 7 C 1.52999 * 109.46944 * 185.00089 * 5 4 2
8 8 N 1.46499 * 109.47193 * 64.99886 * 5 4 2
9 9 C 1.34777 * 119.99665 * 205.27836 * 8 5 4
10 10 O 1.21553 * 120.00289 * 359.72074 * 9 8 5
11 11 C 1.47855 * 119.99755 * 179.72373 * 9 8 5
12 12 C 1.39626 * 120.11115 * 359.72582 * 11 9 8
13 13 C 1.37983 * 119.98358 * 179.71759 * 12 11 9
14 14 C 1.38264 * 120.21455 * 0.55957 * 13 12 11
15 15 C 1.38918 * 120.23108 * 359.71144 * 14 13 12
16 16 N 1.40223 * 119.99588 * 180.02562 * 15 14 13
17 17 C 1.34720 * 126.83947 * 359.97438 * 16 15 14
18 18 N 1.30851 * 108.03023 * 179.97438 * 17 16 15
19 19 C 1.33260 * 109.84467 * 359.97438 * 18 17 16
20 20 N 1.30752 * 108.99771 * 359.71317 * 19 18 17
21 21 C 1.38597 * 120.00664 * 0.02562 * 15 14 13
22 22 N 1.46507 * 109.46619 * 240.00124 * 2 1 3
23 23 C 1.36931 * 119.99852 * 85.00105 * 22 2 1
24 24 H 1.08005 * 120.00247 * 359.97438 * 23 22 2
25 25 C 1.38816 * 120.00272 * 179.97438 * 23 22 2
26 26 N 1.31621 * 119.99621 * 0.02562 * 25 23 22
27 27 Si 1.86793 * 120.00386 * 179.97438 * 25 23 22
28 28 H 1.48500 * 109.46999 * 90.00279 * 27 25 23
29 29 H 1.48505 * 109.47384 * 210.00429 * 27 25 23
30 30 H 1.48506 * 109.47288 * 330.00357 * 27 25 23
31 31 H 1.08992 * 109.47185 * 59.99485 * 1 2 3
32 32 H 1.09001 * 109.47429 * 180.02562 * 1 2 3
33 33 H 1.09007 * 109.46592 * 299.99564 * 1 2 3
34 34 H 1.08996 * 109.47061 * 64.99418 * 4 2 1
35 35 H 1.08994 * 109.46820 * 304.99531 * 4 2 1
36 36 H 1.08996 * 109.47098 * 60.00014 * 7 5 4
37 37 H 1.09001 * 109.46823 * 179.97438 * 7 5 4
38 38 H 1.08999 * 109.47091 * 299.99643 * 7 5 4
39 39 H 0.97001 * 119.99790 * 24.99549 * 8 5 4
40 40 H 1.07997 * 120.00588 * 359.97412 * 12 11 9
41 41 H 1.08001 * 119.89229 * 180.27450 * 13 12 11
42 42 H 1.08001 * 119.88258 * 179.74311 * 14 13 12
43 43 H 1.08005 * 125.98775 * 359.96973 * 17 16 15
44 44 H 1.07996 * 125.49847 * 179.97438 * 19 18 17
45 45 H 1.07998 * 120.10119 * 179.97438 * 21 15 14
46 46 H 0.97000 * 119.99609 * 264.99961 * 22 2 1
47 47 H 0.96994 * 120.00146 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7213 1.2492
5 6 3.5649 -0.6134 1.3135
6 1 3.9954 -0.9923 0.3866
7 6 4.0852 -1.4385 2.4922
8 7 3.9481 0.7892 1.4923
9 6 5.1592 1.2145 1.0814
10 8 5.9355 0.4333 0.5671
11 6 5.5436 2.6315 1.2563
12 6 4.6515 3.5322 1.8417
13 6 5.0152 4.8527 2.0089
14 6 6.2571 5.2910 1.5880
15 6 7.1495 4.4038 0.9994
16 7 8.4079 4.8536 0.5749
17 6 8.8916 6.1075 0.6689
18 7 10.0978 6.1154 0.1619
19 6 10.4180 4.8936 -0.2630
20 7 9.4181 4.0850 -0.0261
21 6 6.7960 3.0742 0.8318
22 7 2.0182 -0.6906 -1.1963
23 6 2.1489 -0.0075 -2.3758
24 1 1.8917 1.0404 -2.4244
25 6 2.6120 -0.6617 -3.5092
26 7 2.9250 -1.9387 -3.4501
27 14 2.7897 0.2701 -5.1184
28 1 4.1516 0.8560 -5.2033
29 1 2.5798 -0.6616 -6.2556
30 1 1.7789 1.3566 -5.1756
31 1 -0.3633 0.5139 -0.8899
32 1 -0.3634 -1.0276 0.0005
33 1 -0.3633 0.5138 0.8901
34 1 1.7517 -1.7715 1.2055
35 1 1.6055 -0.2618 2.1369
36 1 3.8002 -2.4821 2.3592
37 1 5.1716 -1.3620 2.5378
38 1 3.6548 -1.0596 3.4191
39 1 3.3286 1.4127 1.9027
40 1 3.6788 3.1944 2.1672
41 1 4.3257 5.5471 2.4659
42 1 6.5346 6.3267 1.7178
43 1 8.3742 6.9574 1.0891
44 1 11.3539 4.6153 -0.7243
45 1 7.4884 2.3833 0.3740
46 1 2.2489 -1.6318 -1.1527
47 1 3.2482 -2.3960 -4.2421
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001135438257.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:48
Heat of formation + Delta-G solvation = 96.031562 kcal
Electronic energy + Delta-G solvation = -29476.518166 eV
Core-core repulsion = 25468.751335 eV
Total energy + Delta-G solvation = -4007.766831 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-42.60403 -40.29304 -38.74678 -36.80959 -34.65131 -34.39331 -32.27819 -31.95999
-31.34499 -30.70020 -29.45541 -28.58553 -26.34641 -24.80228 -24.21553 -23.58571
-22.45362 -21.64006 -21.02470 -20.32750 -19.74311 -18.88586 -17.24224 -16.86391
-16.62258 -16.14447 -16.03732 -15.54717 -15.03504 -14.90230 -14.59067 -14.44715
-14.10306 -13.92136 -13.84863 -13.66712 -13.25359 -12.93921 -12.70380 -12.67805
-12.19811 -12.13960 -12.02408 -11.74682 -11.67491 -11.61957 -11.17195 -11.03655
-10.81004 -10.61955 -10.44381 -10.41735 -10.22275 -10.19308 -9.90091 -9.73450
-9.60338 -9.38689 -8.86424 -8.80194 -8.72222 -6.90606 -5.71279 -2.99251
0.26759 0.70491 1.62166 1.84218 2.59165 2.86330 3.25809 3.47123
3.51716 3.53573 3.69558 3.88859 4.08947 4.37181 4.47068 4.57262
4.63992 4.72868 4.80258 5.01857 5.11313 5.16243 5.38523 5.46530
5.47232 5.62388 5.67086 5.71900 5.84515 5.87906 5.92848 5.93602
5.99855 6.01564 6.08599 6.11581 6.21168 6.27888 6.34909 6.42999
6.55498 6.64918 6.68740 6.78091 6.90422 7.06512 7.67055 7.70509
7.73737 8.43407 8.47181 9.58544 10.15497 10.49519 11.51467
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.009521 B = 0.003172 C = 0.002711
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2940.255194 B = 8824.610708 C =10325.479732
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.171 3.829
3 H 0.045 0.955
4 C -0.131 4.131
5 C 0.143 3.857
6 H 0.108 0.892
7 C -0.161 4.161
8 N -0.708 5.708
9 C 0.556 3.444
10 O -0.521 6.521
11 C -0.099 4.099
12 C -0.088 4.088
13 C -0.099 4.099
14 C -0.115 4.115
15 C 0.138 3.862
16 N -0.328 5.328
17 C 0.258 3.742
18 N -0.539 5.539
19 C 0.204 3.796
20 N -0.305 5.305
21 C -0.053 4.053
22 N -0.720 5.720
23 C -0.235 4.235
24 H 0.066 0.934
25 C -0.011 4.011
26 N -0.931 5.931
27 Si 0.901 3.099
28 H -0.290 1.290
29 H -0.292 1.292
30 H -0.283 1.283
31 H 0.052 0.948
32 H 0.046 0.954
33 H 0.033 0.967
34 H 0.077 0.923
35 H 0.061 0.939
36 H 0.065 0.935
37 H 0.056 0.944
38 H 0.050 0.950
39 H 0.393 0.607
40 H 0.136 0.864
41 H 0.142 0.858
42 H 0.135 0.865
43 H 0.223 0.777
44 H 0.224 0.776
45 H 0.153 0.847
46 H 0.383 0.617
47 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.648 15.198 17.397 23.564
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.061 3.939
3 H 0.063 0.937
4 C -0.170 4.170
5 C 0.040 3.960
6 H 0.126 0.874
7 C -0.219 4.219
8 N -0.360 5.360
9 C 0.341 3.659
10 O -0.397 6.397
11 C -0.103 4.103
12 C -0.108 4.108
13 C -0.118 4.118
14 C -0.136 4.136
15 C 0.045 3.955
16 N -0.112 5.112
17 C -0.037 4.037
18 N -0.264 5.264
19 C -0.098 4.098
20 N -0.130 5.130
21 C -0.074 4.074
22 N -0.362 5.362
23 C -0.367 4.367
24 H 0.084 0.916
25 C -0.207 4.207
26 N -0.579 5.579
27 Si 0.732 3.268
28 H -0.218 1.218
29 H -0.218 1.218
30 H -0.209 1.209
31 H 0.071 0.929
32 H 0.065 0.935
33 H 0.053 0.947
34 H 0.095 0.905
35 H 0.080 0.920
36 H 0.084 0.916
37 H 0.075 0.925
38 H 0.069 0.931
39 H 0.228 0.772
40 H 0.154 0.846
41 H 0.160 0.840
42 H 0.153 0.847
43 H 0.239 0.761
44 H 0.240 0.760
45 H 0.171 0.829
46 H 0.217 0.783
47 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 5.456 14.224 16.656 22.572
hybrid contribution -0.342 0.661 -0.778 1.077
sum 5.113 14.885 15.879 22.357
Atomic orbital electron populations
1.22461 0.99528 1.00838 0.99740 1.20223 0.91583 0.95490 0.86579
0.93723 1.22181 0.93587 1.02386 0.98841 1.21085 0.95215 0.79665
1.00076 0.87444 1.22184 1.01576 1.00253 0.97923 1.45862 1.16118
1.11877 1.62099 1.17998 0.82471 0.86816 0.78585 1.90833 1.50954
1.55706 1.42168 1.20002 0.94576 0.94613 1.01111 1.21473 0.99108
0.93237 0.96935 1.20909 0.95440 0.95828 0.99617 1.20942 0.93840
0.99151 0.99630 1.17416 0.82597 0.94237 1.01220 1.47745 1.11879
1.07693 1.43862 1.26179 0.91350 0.89056 0.97141 1.70625 1.12907
1.23787 1.19125 1.26220 0.99057 0.86498 0.98043 1.78292 0.97843
1.18856 1.18034 1.21049 0.96279 0.93614 0.96441 1.42387 1.77985
1.10547 1.05249 1.19135 1.36532 0.93636 0.87354 0.91560 1.24683
1.02143 0.95913 0.97923 1.69640 1.50854 1.08582 1.28814 0.86282
0.77781 0.78647 0.84040 1.21795 1.21786 1.20902 0.92901 0.93505
0.94748 0.90464 0.92026 0.91594 0.92482 0.93094 0.77220 0.84642
0.84004 0.84686 0.76104 0.75995 0.82938 0.78327 0.93579
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.80 9.49 37.16 0.35 -2.45 16
2 C 0.17 3.15 2.84 -67.93 -0.19 2.95 16
3 H 0.04 0.83 7.56 -51.93 -0.39 0.44 16
4 C -0.13 -1.91 4.29 -26.73 -0.11 -2.03 16
5 C 0.14 2.25 2.52 -67.93 -0.17 2.08 16
6 H 0.11 2.26 7.05 -51.93 -0.37 1.89 16
7 C -0.16 -2.15 9.49 37.16 0.35 -1.79 16
8 N -0.71 -9.95 4.40 -54.75 -0.24 -10.19 16
9 C 0.56 9.20 7.74 -12.32 -0.10 9.11 16
10 O -0.52 -11.10 16.00 5.32 0.09 -11.01 16
11 C -0.10 -1.31 5.87 -104.99 -0.62 -1.93 16
12 C -0.09 -0.81 9.54 -39.16 -0.37 -1.18 16
13 C -0.10 -0.69 10.02 -39.67 -0.40 -1.09 16
14 C -0.11 -0.87 9.47 -39.32 -0.37 -1.24 16
15 C 0.14 1.56 6.69 -83.63 -0.56 1.00 16
16 N -0.33 -3.85 3.82 -11.84 -0.05 -3.89 16
17 C 0.26 2.36 11.98 -90.37 -1.08 1.28 16
18 N -0.54 -5.93 11.19 -15.75 -0.18 -6.11 16
19 C 0.20 2.26 13.03 -91.76 -1.20 1.06 16
20 N -0.31 -4.14 12.05 29.30 0.35 -3.79 16
21 C -0.05 -0.74 9.23 -39.00 -0.36 -1.10 16
22 N -0.72 -17.47 4.49 -53.42 -0.24 -17.71 16
23 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16
24 H 0.07 1.81 7.83 -52.48 -0.41 1.39 16
25 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16
26 N -0.93 -28.57 13.06 55.49 0.72 -27.84 16
27 Si 0.90 23.12 29.55 -169.99 -5.02 18.10 16
28 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16
29 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16
30 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16
31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16
33 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16
34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16
35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16
36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16
37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
39 H 0.39 4.14 6.63 -40.82 -0.27 3.87 16
40 H 0.14 0.90 6.40 -52.49 -0.34 0.56 16
41 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16
42 H 0.14 0.54 6.79 -52.49 -0.36 0.18 16
43 H 0.22 0.89 7.09 -52.48 -0.37 0.52 16
44 H 0.22 1.60 8.06 -52.49 -0.42 1.18 16
45 H 0.15 2.53 7.33 -52.49 -0.38 2.14 16
46 H 0.38 10.01 7.80 -40.82 -0.32 9.69 16
47 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16
LS Contribution 397.54 15.07 5.99 5.99
Total: -1.00 -37.33 397.54 -10.21 -47.54
By element:
Atomic # 1 Polarization: 17.89 SS G_CDS: -6.57 Total: 11.32 kcal
Atomic # 6 Polarization: 2.67 SS G_CDS: -5.07 Total: -2.41 kcal
Atomic # 7 Polarization: -69.91 SS G_CDS: 0.38 Total: -69.54 kcal
Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal
Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal
Total LS contribution 5.99 Total: 5.99 kcal
Total: -37.33 -10.21 -47.54 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001135438257.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 143.575 kcal
(2) G-P(sol) polarization free energy of solvation -37.330 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.245 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.544 kcal
(6) G-S(sol) free energy of system = (1) + (5) 96.032 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds