Wall clock time and date at job start Sat Apr 11 2020 06:57:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09000 * 109.47659 * 2 1
4 4 C 1.53001 * 109.47434 * 120.00444 * 2 1 3
5 5 C 1.53001 * 109.47204 * 184.99751 * 4 2 1
6 6 H 1.08999 * 109.46935 * 304.99827 * 5 4 2
7 7 C 1.52999 * 109.46944 * 185.00089 * 5 4 2
8 8 N 1.46499 * 109.47193 * 64.99886 * 5 4 2
9 9 C 1.34777 * 119.99665 * 205.27836 * 8 5 4
10 10 O 1.21553 * 120.00289 * 359.72074 * 9 8 5
11 11 C 1.47855 * 119.99755 * 179.72373 * 9 8 5
12 12 C 1.39626 * 120.11115 * 359.72582 * 11 9 8
13 13 C 1.37983 * 119.98358 * 179.71759 * 12 11 9
14 14 C 1.38264 * 120.21455 * 0.55957 * 13 12 11
15 15 C 1.38918 * 120.23108 * 359.71144 * 14 13 12
16 16 N 1.40223 * 119.99588 * 180.02562 * 15 14 13
17 17 C 1.34720 * 126.83947 * 359.97438 * 16 15 14
18 18 N 1.30851 * 108.03023 * 179.97438 * 17 16 15
19 19 C 1.33260 * 109.84467 * 359.97438 * 18 17 16
20 20 N 1.30752 * 108.99771 * 359.71317 * 19 18 17
21 21 C 1.38597 * 120.00664 * 0.02562 * 15 14 13
22 22 N 1.46507 * 109.46619 * 240.00124 * 2 1 3
23 23 C 1.36931 * 119.99852 * 85.00105 * 22 2 1
24 24 H 1.08005 * 120.00247 * 359.97438 * 23 22 2
25 25 C 1.38816 * 120.00272 * 179.97438 * 23 22 2
26 26 N 1.31621 * 119.99621 * 0.02562 * 25 23 22
27 27 Si 1.86793 * 120.00386 * 179.97438 * 25 23 22
28 28 H 1.48500 * 109.46999 * 90.00279 * 27 25 23
29 29 H 1.48505 * 109.47384 * 210.00429 * 27 25 23
30 30 H 1.48506 * 109.47288 * 330.00357 * 27 25 23
31 31 H 1.08992 * 109.47185 * 59.99485 * 1 2 3
32 32 H 1.09001 * 109.47429 * 180.02562 * 1 2 3
33 33 H 1.09007 * 109.46592 * 299.99564 * 1 2 3
34 34 H 1.08996 * 109.47061 * 64.99418 * 4 2 1
35 35 H 1.08994 * 109.46820 * 304.99531 * 4 2 1
36 36 H 1.08996 * 109.47098 * 60.00014 * 7 5 4
37 37 H 1.09001 * 109.46823 * 179.97438 * 7 5 4
38 38 H 1.08999 * 109.47091 * 299.99643 * 7 5 4
39 39 H 0.97001 * 119.99790 * 24.99549 * 8 5 4
40 40 H 1.07997 * 120.00588 * 359.97412 * 12 11 9
41 41 H 1.08001 * 119.89229 * 180.27450 * 13 12 11
42 42 H 1.08001 * 119.88258 * 179.74311 * 14 13 12
43 43 H 1.08005 * 125.98775 * 359.96973 * 17 16 15
44 44 H 1.07996 * 125.49847 * 179.97438 * 19 18 17
45 45 H 1.07998 * 120.10119 * 179.97438 * 21 15 14
46 46 H 0.97000 * 119.99609 * 264.99961 * 22 2 1
47 47 H 0.96994 * 120.00146 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7213 1.2492
5 6 3.5649 -0.6134 1.3135
6 1 3.9954 -0.9923 0.3866
7 6 4.0852 -1.4385 2.4922
8 7 3.9481 0.7892 1.4923
9 6 5.1592 1.2145 1.0814
10 8 5.9355 0.4333 0.5671
11 6 5.5436 2.6315 1.2563
12 6 4.6515 3.5322 1.8417
13 6 5.0152 4.8527 2.0089
14 6 6.2571 5.2910 1.5880
15 6 7.1495 4.4038 0.9994
16 7 8.4079 4.8536 0.5749
17 6 8.8916 6.1075 0.6689
18 7 10.0978 6.1154 0.1619
19 6 10.4180 4.8936 -0.2630
20 7 9.4181 4.0850 -0.0261
21 6 6.7960 3.0742 0.8318
22 7 2.0182 -0.6906 -1.1963
23 6 2.1489 -0.0075 -2.3758
24 1 1.8917 1.0404 -2.4244
25 6 2.6120 -0.6617 -3.5092
26 7 2.9250 -1.9387 -3.4501
27 14 2.7897 0.2701 -5.1184
28 1 4.1516 0.8560 -5.2033
29 1 2.5798 -0.6616 -6.2556
30 1 1.7789 1.3566 -5.1756
31 1 -0.3633 0.5139 -0.8899
32 1 -0.3634 -1.0276 0.0005
33 1 -0.3633 0.5138 0.8901
34 1 1.7517 -1.7715 1.2055
35 1 1.6055 -0.2618 2.1369
36 1 3.8002 -2.4821 2.3592
37 1 5.1716 -1.3620 2.5378
38 1 3.6548 -1.0596 3.4191
39 1 3.3286 1.4127 1.9027
40 1 3.6788 3.1944 2.1672
41 1 4.3257 5.5471 2.4659
42 1 6.5346 6.3267 1.7178
43 1 8.3742 6.9574 1.0891
44 1 11.3539 4.6153 -0.7243
45 1 7.4884 2.3833 0.3740
46 1 2.2489 -1.6318 -1.1527
47 1 3.2482 -2.3960 -4.2421
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001135438257.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:47
Heat of formation + Delta-G solvation = 71.390710 kcal
Electronic energy + Delta-G solvation = -29477.586673 eV
Core-core repulsion = 25468.751335 eV
Total energy + Delta-G solvation = -4008.835338 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-43.39107 -41.37158 -39.73926 -38.27096 -36.13149 -35.34887 -34.02921 -32.93122
-32.34275 -31.73034 -30.51833 -30.21111 -27.59735 -25.78062 -25.55064 -25.04562
-23.33326 -22.54492 -22.08216 -21.44787 -21.20260 -19.85058 -19.22352 -17.83549
-17.53064 -17.12472 -16.96392 -16.67858 -16.40366 -16.10977 -15.80936 -15.57642
-15.45008 -15.17729 -15.00149 -14.76023 -14.51709 -14.32656 -13.94502 -13.61866
-13.43197 -13.35369 -13.19173 -12.97115 -12.86024 -12.81204 -12.66208 -12.53428
-12.26340 -12.19965 -11.94656 -11.82848 -11.56671 -11.42031 -11.24285 -11.05605
-11.04778 -10.92568 -10.26187 -9.98167 -9.52857 -8.95473 -7.93991 -5.18565
-0.47304 -0.15287 0.88208 1.11046 1.38381 1.41992 1.48135 1.77615
1.87260 2.13932 2.53863 2.75041 3.28393 3.33759 3.41037 3.62027
3.73991 3.81398 3.90868 4.00915 4.02361 4.05786 4.13327 4.31551
4.40139 4.46277 4.54445 4.68315 4.76966 4.79822 4.82932 4.90727
4.95226 5.04444 5.12015 5.13226 5.20134 5.22560 5.26075 5.29453
5.34738 5.42178 5.49629 5.54588 5.62457 5.66777 5.94818 6.29765
6.57172 6.88598 7.26426 7.35320 8.17091 8.35169 9.30064
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.009521 B = 0.003172 C = 0.002711
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2940.255194 B = 8824.610708 C =10325.479732
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.162 3.838
3 H 0.045 0.955
4 C -0.117 4.117
5 C 0.145 3.855
6 H 0.043 0.957
7 C -0.151 4.151
8 N -0.691 5.691
9 C 0.546 3.454
10 O -0.589 6.589
11 C -0.125 4.125
12 C -0.079 4.079
13 C -0.081 4.081
14 C -0.093 4.093
15 C 0.123 3.877
16 N -0.340 5.340
17 C 0.271 3.729
18 N -0.561 5.561
19 C 0.204 3.796
20 N -0.364 5.364
21 C -0.088 4.088
22 N -0.732 5.732
23 C -0.222 4.222
24 H 0.071 0.929
25 C -0.080 4.080
26 N -0.970 5.970
27 Si 0.958 3.042
28 H -0.302 1.302
29 H -0.295 1.295
30 H -0.263 1.263
31 H 0.029 0.971
32 H 0.040 0.960
33 H 0.081 0.919
34 H 0.076 0.924
35 H 0.113 0.887
36 H 0.070 0.930
37 H 0.032 0.968
38 H 0.087 0.913
39 H 0.414 0.586
40 H 0.166 0.834
41 H 0.195 0.805
42 H 0.185 0.815
43 H 0.277 0.723
44 H 0.247 0.753
45 H 0.103 0.897
46 H 0.369 0.631
47 H 0.246 0.754
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.832 19.749 20.698 28.668
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.054 3.946
3 H 0.063 0.937
4 C -0.155 4.155
5 C 0.040 3.960
6 H 0.061 0.939
7 C -0.209 4.209
8 N -0.343 5.343
9 C 0.334 3.666
10 O -0.471 6.471
11 C -0.129 4.129
12 C -0.098 4.098
13 C -0.099 4.099
14 C -0.113 4.113
15 C 0.031 3.969
16 N -0.124 5.124
17 C -0.022 4.022
18 N -0.287 5.287
19 C -0.097 4.097
20 N -0.190 5.190
21 C -0.109 4.109
22 N -0.373 5.373
23 C -0.355 4.355
24 H 0.089 0.911
25 C -0.271 4.271
26 N -0.621 5.621
27 Si 0.788 3.212
28 H -0.230 1.230
29 H -0.221 1.221
30 H -0.188 1.188
31 H 0.048 0.952
32 H 0.059 0.941
33 H 0.099 0.901
34 H 0.095 0.905
35 H 0.131 0.869
36 H 0.089 0.911
37 H 0.051 0.949
38 H 0.106 0.894
39 H 0.253 0.747
40 H 0.183 0.817
41 H 0.212 0.788
42 H 0.202 0.798
43 H 0.292 0.708
44 H 0.263 0.737
45 H 0.122 0.878
46 H 0.201 0.799
47 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges 2.560 18.840 20.021 27.611
hybrid contribution 0.520 -0.623 -1.677 1.863
sum 3.080 18.217 18.344 26.036
Atomic orbital electron populations
1.22300 0.97482 1.00869 1.00880 1.20565 0.92791 0.95336 0.85882
0.93657 1.22095 0.92204 1.02451 0.98798 1.20882 0.96001 0.80750
0.98333 0.93853 1.22085 1.00155 1.00353 0.98347 1.45683 1.15708
1.11685 1.61256 1.18707 0.82356 0.88137 0.77388 1.90791 1.53011
1.57866 1.45392 1.19781 0.95590 0.93285 1.04262 1.21841 0.99148
0.93633 0.95204 1.21538 0.95572 0.95249 0.97493 1.21575 0.92795
1.00548 0.96417 1.17693 0.83301 0.93741 1.02180 1.47817 1.11868
1.08382 1.44379 1.27252 0.90731 0.89147 0.95104 1.70661 1.14168
1.23627 1.20265 1.26773 0.99357 0.86479 0.97136 1.78258 0.99347
1.21142 1.20242 1.20800 0.96505 0.94800 0.98788 1.42627 1.78195
1.10082 1.06354 1.19515 1.33709 0.93802 0.88459 0.91064 1.25416
1.03735 0.96814 1.01185 1.69792 1.53232 1.10097 1.29010 0.85357
0.77343 0.77870 0.80615 1.23018 1.22115 1.18807 0.95218 0.94066
0.90071 0.90533 0.86857 0.91131 0.94852 0.89387 0.74722 0.81692
0.78777 0.79758 0.70823 0.73707 0.87848 0.79947 0.94475
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.81 9.49 71.98 0.68 -4.13 16
2 C 0.16 5.71 2.84 44.99 0.13 5.83 16
3 H 0.05 1.60 7.56 -2.39 -0.02 1.58 16
4 C -0.12 -3.15 4.29 30.60 0.13 -3.02 16
5 C 0.14 4.61 2.52 44.99 0.11 4.72 16
6 H 0.04 1.98 7.05 -2.39 -0.02 1.96 16
7 C -0.15 -3.99 9.49 71.98 0.68 -3.31 16
8 N -0.69 -19.19 4.40 -445.40 -1.96 -21.15 16
9 C 0.55 19.33 7.74 86.79 0.67 20.00 16
10 O -0.59 -28.29 16.00 -3.88 -0.06 -28.35 16
11 C -0.13 -3.40 5.87 -20.10 -0.12 -3.52 16
12 C -0.08 -1.17 9.54 22.54 0.22 -0.95 16
13 C -0.08 -0.65 10.02 22.22 0.22 -0.42 16
14 C -0.09 -0.96 9.47 22.44 0.21 -0.75 16
15 C 0.12 2.69 6.69 38.05 0.25 2.95 16
16 N -0.34 -7.91 3.82 -191.36 -0.73 -8.64 16
17 C 0.27 4.31 11.98 180.26 2.16 6.47 16
18 N -0.56 -11.77 11.19 -203.73 -2.28 -14.05 16
19 C 0.20 4.68 13.03 180.75 2.35 7.04 16
20 N -0.36 -10.64 12.05 -61.22 -0.74 -11.38 16
21 C -0.09 -2.67 9.23 22.65 0.21 -2.46 16
22 N -0.73 -36.38 4.49 -322.92 -1.45 -37.83 16
23 C -0.22 -12.59 9.93 84.04 0.83 -11.76 16
24 H 0.07 3.89 7.83 -2.91 -0.02 3.86 16
25 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16
26 N -0.97 -62.46 13.06 21.65 0.28 -62.18 16
27 Si 0.96 49.06 29.55 68.60 2.03 51.09 16
28 H -0.30 -15.86 7.11 99.48 0.71 -15.15 16
29 H -0.29 -15.09 7.11 99.48 0.71 -14.38 16
30 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16
31 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16
32 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16
33 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16
34 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16
35 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16
36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16
37 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16
38 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16
39 H 0.41 7.50 6.63 -92.71 -0.61 6.88 16
40 H 0.17 1.33 6.40 -2.91 -0.02 1.31 16
41 H 0.20 -0.30 8.06 -2.91 -0.02 -0.32 16
42 H 0.19 0.06 6.79 -2.91 -0.02 0.04 16
43 H 0.28 0.70 7.09 -2.91 -0.02 0.67 16
44 H 0.25 3.76 8.06 -2.91 -0.02 3.74 16
45 H 0.10 4.07 7.33 -2.91 -0.02 4.05 16
46 H 0.37 20.20 7.80 -92.71 -0.72 19.47 16
47 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16
Total: -1.00 -94.81 397.54 3.98 -90.83
By element:
Atomic # 1 Polarization: 29.61 SS G_CDS: -0.33 Total: 29.28 kcal
Atomic # 6 Polarization: 3.14 SS G_CDS: 9.22 Total: 12.37 kcal
Atomic # 7 Polarization: -148.35 SS G_CDS: -6.87 Total: -155.22 kcal
Atomic # 8 Polarization: -28.29 SS G_CDS: -0.06 Total: -28.35 kcal
Atomic # 14 Polarization: 49.06 SS G_CDS: 2.03 Total: 51.09 kcal
Total: -94.81 3.98 -90.83 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001135438257.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 162.219 kcal
(2) G-P(sol) polarization free energy of solvation -94.813 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.407 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.829 kcal
(6) G-S(sol) free energy of system = (1) + (5) 71.391 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds