Wall clock time and date at job start Sat Apr 11 2020 06:58:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09006 * 109.46783 * 2 1
4 4 C 1.52999 * 109.47300 * 119.99590 * 2 1 3
5 5 C 1.52995 * 109.47433 * 185.00243 * 4 2 1
6 6 H 1.09007 * 109.46753 * 304.99770 * 5 4 2
7 7 C 1.53002 * 109.47443 * 185.00262 * 5 4 2
8 8 N 1.46496 * 109.47155 * 64.99805 * 5 4 2
9 9 C 1.34779 * 120.00123 * 205.00029 * 8 5 4
10 10 O 1.21614 * 119.99743 * 0.02562 * 9 8 5
11 11 C 1.47420 * 120.00378 * 180.02562 * 9 8 5
12 12 C 1.41372 * 126.40498 * 0.15526 * 11 9 8
13 13 N 1.30437 * 108.07959 * 180.23310 * 12 11 9
14 14 N 1.39939 * 108.91676 * 359.77344 * 13 12 11
15 15 C 1.39806 * 125.77520 * 180.02562 * 14 13 12
16 16 C 1.38942 * 119.69223 * 359.70696 * 15 14 13
17 17 C 1.38424 * 119.10747 * 179.76695 * 16 15 14
18 18 C 1.38788 * 118.48475 * 0.49907 * 17 16 15
19 19 C 1.38130 * 119.29137 * 359.74199 * 18 17 16
20 20 N 1.31892 * 120.84145 * 0.02562 * 19 18 17
21 21 C 1.34620 * 108.44421 * 0.02562 * 14 13 12
22 22 N 1.46494 * 109.47443 * 239.99912 * 2 1 3
23 23 C 1.36942 * 120.00102 * 84.99416 * 22 2 1
24 24 H 1.07997 * 120.00032 * 0.02562 * 23 22 2
25 25 C 1.38807 * 119.99668 * 180.02562 * 23 22 2
26 26 N 1.31617 * 120.00555 * 0.02562 * 25 23 22
27 27 Si 1.86807 * 119.99756 * 180.02562 * 25 23 22
28 28 H 1.48500 * 109.46933 * 59.99506 * 27 25 23
29 29 H 1.48497 * 109.47378 * 179.97438 * 27 25 23
30 30 H 1.48498 * 109.46973 * 299.99958 * 27 25 23
31 31 H 1.08994 * 109.47135 * 180.02562 * 1 2 3
32 32 H 1.09008 * 109.47129 * 300.00403 * 1 2 3
33 33 H 1.08998 * 109.47213 * 60.00060 * 1 2 3
34 34 H 1.09005 * 109.46953 * 64.99870 * 4 2 1
35 35 H 1.09003 * 109.47099 * 305.00210 * 4 2 1
36 36 H 1.09000 * 109.46497 * 300.00170 * 7 5 4
37 37 H 1.08997 * 109.46888 * 59.99319 * 7 5 4
38 38 H 1.08994 * 109.47268 * 179.97438 * 7 5 4
39 39 H 0.97002 * 120.00370 * 25.00326 * 8 5 4
40 40 H 1.08009 * 125.95953 * 359.97438 * 12 11 9
41 41 H 1.08007 * 120.44529 * 0.02562 * 16 15 14
42 42 H 1.08004 * 120.75779 * 180.26262 * 17 16 15
43 43 H 1.08004 * 120.35839 * 179.72884 * 18 17 16
44 44 H 1.08005 * 119.58080 * 179.97438 * 19 18 17
45 45 H 1.08002 * 126.31025 * 179.97438 * 21 14 13
46 46 H 0.97002 * 120.00021 * 265.00867 * 22 2 1
47 47 H 0.97003 * 120.00273 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7211 1.2493
5 6 3.5648 -0.6132 1.3138
6 1 3.9954 -0.9922 0.3869
7 6 4.0852 -1.4381 2.4926
8 7 3.9479 0.7895 1.4924
9 6 5.1612 1.2137 1.0867
10 8 5.9377 0.4321 0.5718
11 6 5.5469 2.6250 1.2669
12 6 4.7568 3.6431 1.8482
13 7 5.4428 4.7522 1.8225
14 7 6.6890 4.5015 1.2373
15 6 7.7015 5.4441 1.0349
16 6 7.5026 6.7624 1.4260
17 6 8.5150 7.6847 1.2244
18 6 9.6917 7.2556 0.6264
19 6 9.8185 5.9304 0.2581
20 7 8.8378 5.0736 0.4675
21 6 6.7478 3.1990 0.9022
22 7 2.0184 -0.6906 -1.1961
23 6 2.1491 -0.0075 -2.3758
24 1 1.8925 1.0404 -2.4242
25 6 2.6114 -0.6621 -3.5092
26 7 2.9236 -1.9393 -3.4503
27 14 2.7904 0.2699 -5.1182
28 1 3.7463 1.3918 -4.9367
29 1 3.2993 -0.6485 -6.1683
30 1 1.4684 0.8076 -5.5285
31 1 -0.3633 -1.0276 0.0005
32 1 -0.3634 0.5139 0.8900
33 1 -0.3633 0.5138 -0.8900
34 1 1.7516 -1.7715 1.2057
35 1 1.6054 -0.2616 2.1370
36 1 3.6545 -1.0591 3.4194
37 1 3.8001 -2.4817 2.3596
38 1 5.1715 -1.3615 2.5382
39 1 3.3284 1.4130 1.9028
40 1 3.7577 3.5243 2.2408
41 1 6.5722 7.0627 1.8851
42 1 8.3906 8.7154 1.5220
43 1 10.4996 7.9506 0.4507
44 1 10.7320 5.5916 -0.2079
45 1 7.5799 2.6967 0.4312
46 1 2.2490 -1.6318 -1.1525
47 1 3.2470 -2.3966 -4.2423
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001135593344.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:58:48
Heat of formation + Delta-G solvation = 93.694337 kcal
Electronic energy + Delta-G solvation = -29231.259548 eV
Core-core repulsion = 25223.391368 eV
Total energy + Delta-G solvation = -4007.868181 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.92593 -40.32185 -39.06049 -36.67048 -34.36849 -34.07301 -32.95796 -32.07560
-30.95483 -30.58987 -29.42982 -28.51401 -26.25348 -24.80616 -24.25591 -23.54944
-22.72446 -21.44400 -20.72889 -19.96278 -19.61373 -18.84488 -17.18844 -16.91685
-16.71281 -16.05759 -15.94964 -15.75246 -15.07870 -14.73380 -14.58898 -14.44489
-13.92799 -13.83642 -13.76542 -13.62925 -13.40325 -12.99897 -12.82075 -12.60164
-12.51960 -12.07664 -11.91332 -11.66620 -11.55180 -11.34735 -10.97214 -10.82719
-10.75292 -10.54463 -10.37862 -10.34073 -10.17558 -10.11279 -9.83132 -9.54933
-9.50732 -9.38592 -8.79976 -8.70166 -8.48494 -6.84200 -5.65451 -2.92978
0.25433 0.72668 1.68824 1.75373 2.05447 3.35434 3.50232 3.51307
3.55828 3.56296 3.74946 3.93328 4.11134 4.41580 4.51895 4.60175
4.68635 4.69173 4.86209 5.06116 5.18698 5.25512 5.28017 5.48289
5.52437 5.54734 5.61983 5.67403 5.70748 5.78557 5.97177 6.00519
6.02928 6.08150 6.14165 6.21452 6.36285 6.44382 6.52049 6.64556
6.70307 6.81220 6.90452 7.01792 7.02835 7.14452 7.51327 7.79349
7.93456 8.53140 8.68609 9.64377 10.22086 10.56131 11.57323
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.010233 B = 0.002882 C = 0.002507
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2735.617996 B = 9712.209504 C =11165.963056
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.171 3.829
3 H 0.046 0.954
4 C -0.131 4.131
5 C 0.146 3.854
6 H 0.106 0.894
7 C -0.161 4.161
8 N -0.711 5.711
9 C 0.594 3.406
10 O -0.536 6.536
11 C -0.274 4.274
12 C 0.101 3.899
13 N -0.290 5.290
14 N -0.319 5.319
15 C 0.369 3.631
16 C -0.162 4.162
17 C -0.053 4.053
18 C -0.187 4.187
19 C 0.135 3.865
20 N -0.504 5.504
21 C 0.152 3.848
22 N -0.720 5.720
23 C -0.233 4.233
24 H 0.066 0.934
25 C -0.012 4.012
26 N -0.932 5.932
27 Si 0.902 3.098
28 H -0.288 1.288
29 H -0.291 1.291
30 H -0.288 1.288
31 H 0.045 0.955
32 H 0.034 0.966
33 H 0.051 0.949
34 H 0.075 0.925
35 H 0.061 0.939
36 H 0.049 0.951
37 H 0.063 0.937
38 H 0.056 0.944
39 H 0.392 0.608
40 H 0.200 0.800
41 H 0.150 0.850
42 H 0.145 0.855
43 H 0.143 0.857
44 H 0.169 0.831
45 H 0.196 0.804
46 H 0.383 0.617
47 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.139 17.201 16.091 25.265
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.061 3.939
3 H 0.064 0.936
4 C -0.169 4.169
5 C 0.042 3.958
6 H 0.124 0.876
7 C -0.219 4.219
8 N -0.361 5.361
9 C 0.380 3.620
10 O -0.413 6.413
11 C -0.288 4.288
12 C -0.089 4.089
13 N -0.107 5.107
14 N -0.094 5.094
15 C 0.143 3.857
16 C -0.184 4.184
17 C -0.079 4.079
18 C -0.207 4.207
19 C -0.023 4.023
20 N -0.217 5.217
21 C 0.007 3.993
22 N -0.361 5.361
23 C -0.364 4.364
24 H 0.084 0.916
25 C -0.208 4.208
26 N -0.580 5.580
27 Si 0.733 3.267
28 H -0.214 1.214
29 H -0.217 1.217
30 H -0.215 1.215
31 H 0.064 0.936
32 H 0.053 0.947
33 H 0.070 0.930
34 H 0.094 0.906
35 H 0.079 0.921
36 H 0.068 0.932
37 H 0.082 0.918
38 H 0.075 0.925
39 H 0.225 0.775
40 H 0.217 0.783
41 H 0.168 0.832
42 H 0.163 0.837
43 H 0.161 0.839
44 H 0.186 0.814
45 H 0.213 0.787
46 H 0.217 0.783
47 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 9.874 17.139 15.595 25.188
hybrid contribution -0.354 0.483 -0.816 1.012
sum 9.519 17.622 14.779 24.891
Atomic orbital electron populations
1.22462 0.99625 1.00760 0.99710 1.20227 0.91480 0.95613 0.86576
0.93574 1.22170 0.93790 1.02206 0.98775 1.21021 0.94994 0.79906
0.99897 0.87572 1.22186 1.01572 1.00133 0.98022 1.45699 1.16038
1.11593 1.62800 1.17016 0.82042 0.85282 0.77649 1.90815 1.51393
1.55725 1.43400 1.20524 0.96432 0.96407 1.15452 1.24310 0.99626
0.89123 0.95838 1.77203 0.90322 1.23449 1.19723 1.45387 1.11691
1.06357 1.45961 1.17727 0.86259 0.86385 0.95374 1.21656 1.02056
0.91437 1.03236 1.21554 0.91950 0.99996 0.94395 1.22203 0.99339
0.97662 1.01516 1.22589 0.95774 0.89139 0.94765 1.66895 1.00146
1.39607 1.15057 1.23204 0.99032 0.83240 0.93863 1.42379 1.77955
1.10540 1.05250 1.19101 1.36356 0.93588 0.87344 0.91624 1.24674
1.02285 0.95922 0.97885 1.69632 1.51012 1.08569 1.28823 0.86347
0.77608 0.78726 0.83999 1.21446 1.21741 1.21469 0.93569 0.94740
0.92970 0.90632 0.92059 0.93180 0.91794 0.92493 0.77478 0.78338
0.83191 0.83729 0.83903 0.81411 0.78713 0.78340 0.93595
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.89 9.49 37.16 0.35 -2.54 16
2 C 0.17 3.25 2.84 -67.93 -0.19 3.05 16
3 H 0.05 0.90 7.56 -51.93 -0.39 0.50 16
4 C -0.13 -1.98 4.29 -26.73 -0.11 -2.10 16
5 C 0.15 2.38 2.52 -67.93 -0.17 2.21 16
6 H 0.11 2.29 7.05 -51.93 -0.37 1.92 16
7 C -0.16 -2.23 9.48 37.16 0.35 -1.88 16
8 N -0.71 -10.55 4.44 -54.88 -0.24 -10.80 16
9 C 0.59 10.33 7.78 -12.52 -0.10 10.24 16
10 O -0.54 -11.69 16.56 5.27 0.09 -11.60 16
11 C -0.27 -4.05 6.13 -105.05 -0.64 -4.69 16
12 C 0.10 1.20 11.50 -16.95 -0.20 1.01 16
13 N -0.29 -3.75 11.74 30.88 0.36 -3.39 16
14 N -0.32 -4.35 3.76 -11.74 -0.04 -4.40 16
15 C 0.37 4.48 7.54 -154.38 -1.16 3.31 16
16 C -0.16 -1.52 9.69 -39.25 -0.38 -1.90 16
17 C -0.05 -0.34 10.17 -39.31 -0.40 -0.74 16
18 C -0.19 -1.10 10.11 -39.42 -0.40 -1.50 16
19 C 0.14 1.06 11.18 -17.57 -0.20 0.87 16
20 N -0.50 -5.84 9.82 -12.29 -0.12 -5.96 16
21 C 0.15 2.24 10.86 -16.41 -0.18 2.06 16
22 N -0.72 -17.82 4.49 -53.43 -0.24 -18.06 16
23 C -0.23 -6.55 9.93 -15.06 -0.15 -6.70 16
24 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16
25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16
26 N -0.93 -28.87 13.06 55.49 0.72 -28.15 16
27 Si 0.90 23.37 29.55 -169.99 -5.02 18.34 16
28 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16
29 H -0.29 -7.60 7.11 56.52 0.40 -7.19 16
30 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
32 H 0.03 0.49 8.14 -51.92 -0.42 0.06 16
33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16
34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16
35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16
39 H 0.39 4.47 7.56 -40.82 -0.31 4.16 16
40 H 0.20 1.55 7.50 -52.48 -0.39 1.16 16
41 H 0.15 1.32 7.67 -52.48 -0.40 0.92 16
42 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16
43 H 0.14 0.40 8.06 -52.48 -0.42 -0.02 16
44 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16
45 H 0.20 2.81 8.03 -52.49 -0.42 2.39 16
46 H 0.38 10.17 7.80 -40.82 -0.32 9.85 16
47 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16
LS Contribution 402.37 15.07 6.06 6.06
Total: -1.00 -36.68 402.37 -8.91 -45.59
By element:
Atomic # 1 Polarization: 18.90 SS G_CDS: -6.80 Total: 12.10 kcal
Atomic # 6 Polarization: 3.93 SS G_CDS: -3.67 Total: 0.26 kcal
Atomic # 7 Polarization: -71.19 SS G_CDS: 0.44 Total: -70.76 kcal
Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal
Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.34 kcal
Total LS contribution 6.06 Total: 6.06 kcal
Total: -36.68 -8.91 -45.59 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001135593344.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 139.285 kcal
(2) G-P(sol) polarization free energy of solvation -36.684 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.600 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.590 kcal
(6) G-S(sol) free energy of system = (1) + (5) 93.694 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds