Wall clock time and date at job start Sat Apr 11 2020 06:58:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09006 * 109.46783 * 2 1
4 4 C 1.52999 * 109.47300 * 119.99590 * 2 1 3
5 5 C 1.52995 * 109.47433 * 185.00243 * 4 2 1
6 6 H 1.09007 * 109.46753 * 304.99770 * 5 4 2
7 7 C 1.53002 * 109.47443 * 185.00262 * 5 4 2
8 8 N 1.46496 * 109.47155 * 64.99805 * 5 4 2
9 9 C 1.34779 * 120.00123 * 205.00029 * 8 5 4
10 10 O 1.21614 * 119.99743 * 0.02562 * 9 8 5
11 11 C 1.47420 * 120.00378 * 180.02562 * 9 8 5
12 12 C 1.41372 * 126.40498 * 0.15526 * 11 9 8
13 13 N 1.30437 * 108.07959 * 180.23310 * 12 11 9
14 14 N 1.39939 * 108.91676 * 359.77344 * 13 12 11
15 15 C 1.39806 * 125.77520 * 180.02562 * 14 13 12
16 16 C 1.38942 * 119.69223 * 359.70696 * 15 14 13
17 17 C 1.38424 * 119.10747 * 179.76695 * 16 15 14
18 18 C 1.38788 * 118.48475 * 0.49907 * 17 16 15
19 19 C 1.38130 * 119.29137 * 359.74199 * 18 17 16
20 20 N 1.31892 * 120.84145 * 0.02562 * 19 18 17
21 21 C 1.34620 * 108.44421 * 0.02562 * 14 13 12
22 22 N 1.46494 * 109.47443 * 239.99912 * 2 1 3
23 23 C 1.36942 * 120.00102 * 84.99416 * 22 2 1
24 24 H 1.07997 * 120.00032 * 0.02562 * 23 22 2
25 25 C 1.38807 * 119.99668 * 180.02562 * 23 22 2
26 26 N 1.31617 * 120.00555 * 0.02562 * 25 23 22
27 27 Si 1.86807 * 119.99756 * 180.02562 * 25 23 22
28 28 H 1.48500 * 109.46933 * 59.99506 * 27 25 23
29 29 H 1.48497 * 109.47378 * 179.97438 * 27 25 23
30 30 H 1.48498 * 109.46973 * 299.99958 * 27 25 23
31 31 H 1.08994 * 109.47135 * 180.02562 * 1 2 3
32 32 H 1.09008 * 109.47129 * 300.00403 * 1 2 3
33 33 H 1.08998 * 109.47213 * 60.00060 * 1 2 3
34 34 H 1.09005 * 109.46953 * 64.99870 * 4 2 1
35 35 H 1.09003 * 109.47099 * 305.00210 * 4 2 1
36 36 H 1.09000 * 109.46497 * 300.00170 * 7 5 4
37 37 H 1.08997 * 109.46888 * 59.99319 * 7 5 4
38 38 H 1.08994 * 109.47268 * 179.97438 * 7 5 4
39 39 H 0.97002 * 120.00370 * 25.00326 * 8 5 4
40 40 H 1.08009 * 125.95953 * 359.97438 * 12 11 9
41 41 H 1.08007 * 120.44529 * 0.02562 * 16 15 14
42 42 H 1.08004 * 120.75779 * 180.26262 * 17 16 15
43 43 H 1.08004 * 120.35839 * 179.72884 * 18 17 16
44 44 H 1.08005 * 119.58080 * 179.97438 * 19 18 17
45 45 H 1.08002 * 126.31025 * 179.97438 * 21 14 13
46 46 H 0.97002 * 120.00021 * 265.00867 * 22 2 1
47 47 H 0.97003 * 120.00273 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7211 1.2493
5 6 3.5648 -0.6132 1.3138
6 1 3.9954 -0.9922 0.3869
7 6 4.0852 -1.4381 2.4926
8 7 3.9479 0.7895 1.4924
9 6 5.1612 1.2137 1.0867
10 8 5.9377 0.4321 0.5718
11 6 5.5469 2.6250 1.2669
12 6 4.7568 3.6431 1.8482
13 7 5.4428 4.7522 1.8225
14 7 6.6890 4.5015 1.2373
15 6 7.7015 5.4441 1.0349
16 6 7.5026 6.7624 1.4260
17 6 8.5150 7.6847 1.2244
18 6 9.6917 7.2556 0.6264
19 6 9.8185 5.9304 0.2581
20 7 8.8378 5.0736 0.4675
21 6 6.7478 3.1990 0.9022
22 7 2.0184 -0.6906 -1.1961
23 6 2.1491 -0.0075 -2.3758
24 1 1.8925 1.0404 -2.4242
25 6 2.6114 -0.6621 -3.5092
26 7 2.9236 -1.9393 -3.4503
27 14 2.7904 0.2699 -5.1182
28 1 3.7463 1.3918 -4.9367
29 1 3.2993 -0.6485 -6.1683
30 1 1.4684 0.8076 -5.5285
31 1 -0.3633 -1.0276 0.0005
32 1 -0.3634 0.5139 0.8900
33 1 -0.3633 0.5138 -0.8900
34 1 1.7516 -1.7715 1.2057
35 1 1.6054 -0.2616 2.1370
36 1 3.6545 -1.0591 3.4194
37 1 3.8001 -2.4817 2.3596
38 1 5.1715 -1.3615 2.5382
39 1 3.3284 1.4130 1.9028
40 1 3.7577 3.5243 2.2408
41 1 6.5722 7.0627 1.8851
42 1 8.3906 8.7154 1.5220
43 1 10.4996 7.9506 0.4507
44 1 10.7320 5.5916 -0.2079
45 1 7.5799 2.6967 0.4312
46 1 2.2490 -1.6318 -1.1525
47 1 3.2470 -2.3966 -4.2423
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001135593344.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:58:47
Heat of formation + Delta-G solvation = 68.668349 kcal
Electronic energy + Delta-G solvation = -29232.344756 eV
Core-core repulsion = 25223.391368 eV
Total energy + Delta-G solvation = -4008.953389 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-42.88626 -41.10007 -40.35002 -38.20538 -36.00635 -34.92561 -33.96326 -33.62169
-32.26801 -31.55189 -30.53159 -30.21610 -27.54388 -25.79076 -25.55327 -24.95262
-23.75153 -22.38850 -21.96600 -21.19223 -21.09309 -19.87328 -19.20258 -17.76006
-17.53464 -17.19676 -16.91195 -16.73403 -16.61005 -15.96385 -15.78201 -15.61737
-15.45476 -15.31216 -14.91024 -14.62032 -14.48032 -14.20509 -14.16467 -13.91540
-13.55876 -13.31966 -13.13599 -13.06600 -12.90369 -12.75786 -12.63317 -12.42151
-12.24060 -12.17329 -11.77374 -11.64808 -11.51992 -11.36825 -11.04000 -10.94120
-10.87230 -10.77516 -10.41113 -9.93726 -9.43632 -8.91387 -7.90066 -5.14546
-0.53327 0.13617 0.69891 0.86600 1.07554 1.41275 1.45128 1.49904
2.29878 2.46740 2.57130 2.70366 3.13268 3.32000 3.44202 3.67210
3.85410 3.90410 3.95770 3.98098 4.04164 4.07447 4.19570 4.21402
4.35646 4.47193 4.58073 4.62163 4.68163 4.76221 4.85135 4.89435
4.94393 5.00088 5.09545 5.11247 5.15651 5.22945 5.30667 5.40715
5.41489 5.48352 5.54449 5.68427 5.72904 5.80629 6.13291 6.33640
6.70544 6.78480 7.39153 7.41290 8.21053 8.39748 9.33696
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.010233 B = 0.002882 C = 0.002507
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2735.617996 B = 9712.209504 C =11165.963056
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.162 3.838
3 H 0.045 0.955
4 C -0.117 4.117
5 C 0.148 3.852
6 H 0.045 0.955
7 C -0.151 4.151
8 N -0.695 5.695
9 C 0.589 3.411
10 O -0.594 6.594
11 C -0.291 4.291
12 C 0.112 3.888
13 N -0.295 5.295
14 N -0.318 5.318
15 C 0.324 3.676
16 C -0.166 4.166
17 C -0.047 4.047
18 C -0.166 4.166
19 C 0.119 3.881
20 N -0.538 5.538
21 C 0.138 3.862
22 N -0.731 5.731
23 C -0.223 4.223
24 H 0.068 0.932
25 C -0.079 4.079
26 N -0.969 5.969
27 Si 0.959 3.041
28 H -0.290 1.290
29 H -0.296 1.296
30 H -0.274 1.274
31 H 0.041 0.959
32 H 0.079 0.921
33 H 0.027 0.973
34 H 0.076 0.924
35 H 0.111 0.889
36 H 0.084 0.916
37 H 0.069 0.931
38 H 0.035 0.965
39 H 0.412 0.588
40 H 0.242 0.758
41 H 0.152 0.848
42 H 0.183 0.817
43 H 0.184 0.816
44 H 0.192 0.808
45 H 0.184 0.816
46 H 0.370 0.630
47 H 0.247 0.753
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.336 20.549 18.246 28.718
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.054 3.946
3 H 0.063 0.937
4 C -0.155 4.155
5 C 0.043 3.957
6 H 0.064 0.936
7 C -0.209 4.209
8 N -0.346 5.346
9 C 0.377 3.623
10 O -0.476 6.476
11 C -0.305 4.305
12 C -0.077 4.077
13 N -0.112 5.112
14 N -0.092 5.092
15 C 0.099 3.901
16 C -0.189 4.189
17 C -0.073 4.073
18 C -0.186 4.186
19 C -0.038 4.038
20 N -0.252 5.252
21 C -0.010 4.010
22 N -0.371 5.371
23 C -0.355 4.355
24 H 0.086 0.914
25 C -0.271 4.271
26 N -0.620 5.620
27 Si 0.790 3.210
28 H -0.217 1.217
29 H -0.223 1.223
30 H -0.200 1.200
31 H 0.060 0.940
32 H 0.097 0.903
33 H 0.046 0.954
34 H 0.095 0.905
35 H 0.129 0.871
36 H 0.103 0.897
37 H 0.088 0.912
38 H 0.054 0.946
39 H 0.250 0.750
40 H 0.257 0.743
41 H 0.169 0.831
42 H 0.200 0.800
43 H 0.201 0.799
44 H 0.209 0.791
45 H 0.201 0.799
46 H 0.202 0.798
47 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges 9.012 20.573 17.811 28.666
hybrid contribution 0.008 -0.391 -1.417 1.470
sum 9.021 20.183 16.394 27.522
Atomic orbital electron populations
1.22305 0.97682 1.00830 1.00737 1.20556 0.92644 0.95392 0.86014
0.93741 1.22082 0.92518 1.02314 0.98605 1.20840 0.95724 0.80737
0.98356 0.93631 1.22085 1.00310 1.00247 0.98280 1.45532 1.15572
1.11567 1.61921 1.17429 0.82123 0.85952 0.76771 1.90781 1.53190
1.57426 1.46179 1.20354 0.97337 0.95588 1.17252 1.24866 1.00679
0.87476 0.94677 1.77156 0.90250 1.23898 1.19908 1.45581 1.12235
1.06052 1.45341 1.18098 0.86667 0.87171 0.98131 1.21842 1.03105
0.90782 1.03122 1.22045 0.91022 1.01080 0.93171 1.22677 0.99950
0.97186 0.98758 1.23197 0.95749 0.90042 0.94847 1.66840 1.00928
1.41484 1.15959 1.23153 0.99094 0.84313 0.94406 1.42599 1.78177
1.10089 1.06273 1.19457 1.33856 0.93698 0.88527 0.91371 1.25406
1.03738 0.96840 1.01120 1.69786 1.53194 1.10009 1.29055 0.85410
0.77827 0.77274 0.80516 1.21677 1.22266 1.20049 0.93992 0.90251
0.95353 0.90540 0.87099 0.89699 0.91200 0.94582 0.75040 0.74251
0.83067 0.79996 0.79882 0.79103 0.79905 0.79848 0.94430
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.04 9.49 71.98 0.68 -4.36 16
2 C 0.16 5.91 2.84 44.99 0.13 6.03 16
3 H 0.04 1.64 7.56 -2.38 -0.02 1.63 16
4 C -0.12 -3.27 4.29 30.59 0.13 -3.13 16
5 C 0.15 4.80 2.52 44.99 0.11 4.91 16
6 H 0.05 2.08 7.05 -2.38 -0.02 2.06 16
7 C -0.15 -4.05 9.48 71.98 0.68 -3.37 16
8 N -0.69 -20.19 4.44 -445.80 -1.98 -22.17 16
9 C 0.59 21.33 7.78 86.66 0.67 22.00 16
10 O -0.59 -27.94 16.56 -4.08 -0.07 -28.01 16
11 C -0.29 -8.84 6.13 -20.14 -0.12 -8.96 16
12 C 0.11 2.54 11.50 85.67 0.99 3.53 16
13 N -0.29 -7.46 11.74 -56.22 -0.66 -8.11 16
14 N -0.32 -8.95 3.76 -191.06 -0.72 -9.66 16
15 C 0.32 7.99 7.54 132.77 1.00 8.99 16
16 C -0.17 -2.93 9.69 22.48 0.22 -2.72 16
17 C -0.05 -0.47 10.17 22.45 0.23 -0.24 16
18 C -0.17 -1.42 10.11 22.38 0.23 -1.19 16
19 C 0.12 1.73 11.18 84.66 0.95 2.67 16
20 N -0.54 -12.80 9.82 -192.80 -1.89 -14.69 16
21 C 0.14 4.35 10.86 84.21 0.91 5.26 16
22 N -0.73 -36.85 4.49 -322.95 -1.45 -38.30 16
23 C -0.22 -12.79 9.93 84.03 0.83 -11.95 16
24 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16
25 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16
26 N -0.97 -62.37 13.06 21.65 0.28 -62.08 16
27 Si 0.96 49.30 29.55 68.60 2.03 51.33 16
28 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16
29 H -0.30 -15.33 7.11 99.48 0.71 -14.62 16
30 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16
31 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16
32 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16
33 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16
34 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16
35 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16
36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16
37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16
38 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16
39 H 0.41 8.29 7.56 -92.71 -0.70 7.59 16
40 H 0.24 2.95 7.50 -2.91 -0.02 2.93 16
41 H 0.15 2.51 7.67 -2.91 -0.02 2.49 16
42 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16
43 H 0.18 0.09 8.06 -2.91 -0.02 0.07 16
44 H 0.19 1.59 8.06 -2.91 -0.02 1.57 16
45 H 0.18 5.98 8.03 -2.91 -0.02 5.95 16
46 H 0.37 20.37 7.80 -92.71 -0.72 19.65 16
47 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16
Total: -1.00 -87.25 402.37 3.23 -84.02
By element:
Atomic # 1 Polarization: 34.94 SS G_CDS: -0.42 Total: 34.51 kcal
Atomic # 6 Polarization: 5.05 SS G_CDS: 8.11 Total: 13.16 kcal
Atomic # 7 Polarization: -148.60 SS G_CDS: -6.42 Total: -155.02 kcal
Atomic # 8 Polarization: -27.94 SS G_CDS: -0.07 Total: -28.01 kcal
Atomic # 14 Polarization: 49.30 SS G_CDS: 2.03 Total: 51.33 kcal
Total: -87.25 3.23 -84.02 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001135593344.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 152.690 kcal
(2) G-P(sol) polarization free energy of solvation -87.248 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.442 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.022 kcal
(6) G-S(sol) free energy of system = (1) + (5) 68.668 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds