Wall clock time and date at job start Sat Apr 11 2020 06:59:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47149 * 2 1
4 4 C 1.53000 * 109.47084 * 239.99986 * 2 1 3
5 5 C 1.52992 * 109.47542 * 174.37262 * 4 2 1
6 6 H 1.09004 * 109.46990 * 54.74477 * 5 4 2
7 7 C 1.53007 * 109.47343 * 294.75063 * 5 4 2
8 8 N 1.46501 * 109.47610 * 174.74941 * 5 4 2
9 9 C 1.36937 * 119.99954 * 203.26494 * 8 5 4
10 10 H 1.07997 * 119.99961 * 4.66575 * 9 8 5
11 11 C 1.38811 * 119.99695 * 184.39820 * 9 8 5
12 12 N 1.31618 * 119.99929 * 173.89165 * 11 9 8
13 13 Si 1.86798 * 119.99930 * 353.88457 * 11 9 8
14 14 H 1.48495 * 109.47182 * 93.51300 * 13 11 9
15 15 H 1.48507 * 109.46735 * 213.50837 * 13 11 9
16 16 H 1.48498 * 109.47422 * 333.50650 * 13 11 9
17 17 N 1.46497 * 109.47090 * 120.00182 * 2 1 3
18 18 C 1.34776 * 119.99916 * 275.65311 * 17 2 1
19 19 O 1.21508 * 119.99837 * 5.31961 * 18 17 2
20 20 C 1.48181 * 119.99959 * 185.32339 * 18 17 2
21 21 C 1.39125 * 119.69514 * 185.15362 * 20 18 17
22 22 C 1.39269 * 118.97688 * 179.75264 * 21 20 18
23 23 N 1.39972 * 120.82008 * 180.29029 * 22 21 20
24 24 C 1.37159 * 126.47910 * 180.22934 * 23 22 21
25 25 C 1.34626 * 106.82509 * 180.02562 * 24 23 22
26 26 N 1.34155 * 108.21388 * 359.97438 * 25 24 23
27 27 C 1.30485 * 109.36243 * 359.72796 * 26 25 24
28 28 C 1.39270 * 118.35872 * 0.51337 * 22 21 20
29 29 C 1.38335 * 119.27424 * 359.75029 * 28 22 21
30 30 N 1.31591 * 120.98255 * 359.97438 * 29 28 22
31 31 H 1.09000 * 109.47631 * 60.00045 * 1 2 3
32 32 H 1.09002 * 109.47149 * 179.97438 * 1 2 3
33 33 H 1.09001 * 109.46971 * 299.99918 * 1 2 3
34 34 H 1.09003 * 109.47178 * 54.37205 * 4 2 1
35 35 H 1.08996 * 109.47260 * 294.37746 * 4 2 1
36 36 H 1.09005 * 109.47061 * 59.99213 * 7 5 4
37 37 H 1.08997 * 109.47470 * 179.97438 * 7 5 4
38 38 H 1.09000 * 109.46841 * 300.00101 * 7 5 4
39 39 H 0.96999 * 119.99642 * 23.25889 * 8 5 4
40 40 H 0.96996 * 120.00302 * 179.97438 * 12 11 9
41 41 H 0.97000 * 119.99883 * 95.65458 * 17 2 1
42 42 H 1.07999 * 120.50823 * 0.02562 * 21 20 18
43 43 H 1.07996 * 126.58924 * 359.96454 * 24 23 22
44 44 H 1.08003 * 125.89175 * 180.02562 * 25 24 23
45 45 H 1.07999 * 125.72069 * 180.26571 * 27 26 25
46 46 H 1.07998 * 120.35748 * 179.72896 * 28 22 21
47 47 H 1.08006 * 119.50748 * 179.97438 * 29 28 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7213 -1.2492
5 6 3.5633 -0.6000 -1.3221
6 1 4.0018 -0.9675 -0.3943
7 6 3.9492 0.8670 -1.5224
8 7 4.0633 -1.3944 -2.4469
9 6 5.3592 -1.8369 -2.4500
10 1 5.9905 -1.6654 -1.5907
11 6 5.8598 -2.5108 -3.5555
12 7 7.1355 -2.8301 -3.6096
13 14 4.7227 -2.9647 -4.9664
14 1 4.7667 -1.8993 -5.9999
15 1 5.1633 -4.2514 -5.5628
16 1 3.3345 -3.1043 -4.4581
17 7 2.0183 -0.6906 1.1961
18 6 2.1345 -0.0216 2.3603
19 8 1.7442 1.1261 2.4430
20 6 2.7383 -0.6856 3.5394
21 6 2.7578 -0.0287 4.7656
22 6 3.3243 -0.6688 5.8651
23 7 3.3590 -0.0460 7.1181
24 6 3.8893 -0.5644 8.2720
25 6 3.7109 0.3613 9.2331
26 7 3.0901 1.4180 8.6874
27 6 2.8794 1.1891 7.4202
28 6 3.8596 -1.9419 5.6859
29 6 3.8075 -2.5276 4.4338
30 7 3.2606 -1.9000 3.4146
31 1 -0.3634 0.5138 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 -0.3633 0.5138 0.8900
34 1 1.5967 -0.2689 -2.1364
35 1 1.7612 -1.7738 -1.2003
36 1 3.5772 1.4581 -0.6856
37 1 5.0346 0.9535 -1.5739
38 1 3.5107 1.2346 -2.4501
39 1 3.4764 -1.6070 -3.1893
40 1 7.4852 -3.3013 -4.3819
41 1 2.2580 -1.6294 1.1502
42 1 2.3361 0.9607 4.8643
43 1 4.3587 -1.5301 8.3876
44 1 4.0157 0.2694 10.2651
45 1 2.4009 1.8662 6.7282
46 1 4.3107 -2.4660 6.5155
47 1 4.2219 -3.5147 4.2905
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001135852223.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:59:33
Heat of formation + Delta-G solvation = 81.561302 kcal
Electronic energy + Delta-G solvation = -29012.769432 eV
Core-core repulsion = 25004.375123 eV
Total energy + Delta-G solvation = -4008.394308 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-42.86207 -40.91366 -39.42337 -37.13346 -35.40293 -34.80754 -32.50119 -32.03530
-31.23419 -30.58402 -29.90948 -29.08155 -26.42358 -25.38935 -24.66928 -23.62039
-22.49828 -21.50479 -21.17284 -20.64181 -19.82214 -19.34835 -17.70153 -17.35910
-16.69663 -16.45582 -16.12762 -15.96693 -15.35717 -15.06072 -14.80945 -14.73503
-14.40510 -14.33234 -14.20011 -13.85750 -13.81064 -13.64420 -13.27106 -12.63306
-12.58512 -12.49305 -12.20052 -11.98883 -11.77663 -11.72632 -11.34052 -11.00238
-10.74220 -10.67870 -10.56497 -10.45398 -10.23756 -9.99808 -9.98321 -9.81934
-9.59327 -9.56595 -9.07168 -9.04857 -8.92553 -7.27564 -5.77773 -3.12467
0.02495 0.30571 1.72143 1.98095 2.48925 2.65301 2.91440 3.36493
3.38869 3.43849 3.44502 3.75664 3.97531 4.02503 4.15784 4.33090
4.43928 4.58476 4.70262 4.80598 4.90419 4.95267 5.05923 5.11720
5.16030 5.22098 5.26017 5.46779 5.54043 5.63758 5.69189 5.73534
5.82075 5.85470 5.92690 6.08891 6.16205 6.17305 6.23179 6.37123
6.48939 6.54160 6.61680 6.84452 7.03651 7.17523 7.46808 7.50406
8.00219 8.03740 8.41537 9.20644 9.93329 10.13620 11.40638
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.015268 B = 0.002328 C = 0.002137
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1833.474662 B =12025.444783 C =13098.374554
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.142 3.858
3 H 0.095 0.905
4 C -0.137 4.137
5 C 0.178 3.822
6 H 0.055 0.945
7 C -0.167 4.167
8 N -0.749 5.749
9 C -0.239 4.239
10 H 0.089 0.911
11 C 0.003 3.997
12 N -0.934 5.934
13 Si 0.883 3.117
14 H -0.286 1.286
15 H -0.292 1.292
16 H -0.277 1.277
17 N -0.693 5.693
18 C 0.571 3.429
19 O -0.533 6.533
20 C 0.116 3.884
21 C -0.133 4.133
22 C 0.175 3.825
23 N -0.415 5.415
24 C -0.053 4.053
25 C -0.018 4.018
26 N -0.481 5.481
27 C 0.198 3.802
28 C -0.170 4.170
29 C 0.134 3.866
30 N -0.457 5.457
31 H 0.067 0.933
32 H 0.056 0.944
33 H 0.059 0.941
34 H 0.077 0.923
35 H 0.071 0.929
36 H 0.039 0.961
37 H 0.057 0.943
38 H 0.045 0.955
39 H 0.360 0.640
40 H 0.259 0.741
41 H 0.414 0.586
42 H 0.157 0.843
43 H 0.181 0.819
44 H 0.178 0.822
45 H 0.213 0.787
46 H 0.148 0.852
47 H 0.177 0.823
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.879 2.210 21.908 25.019
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.038 3.962
3 H 0.113 0.887
4 C -0.176 4.176
5 C 0.069 3.931
6 H 0.073 0.927
7 C -0.227 4.227
8 N -0.392 5.392
9 C -0.369 4.369
10 H 0.106 0.894
11 C -0.193 4.193
12 N -0.581 5.581
13 Si 0.714 3.286
14 H -0.212 1.212
15 H -0.218 1.218
16 H -0.203 1.203
17 N -0.344 5.344
18 C 0.355 3.645
19 O -0.409 6.409
20 C -0.023 4.023
21 C -0.156 4.156
22 C 0.073 3.927
23 N -0.096 5.096
24 C -0.181 4.181
25 C -0.163 4.163
26 N -0.198 5.198
27 C -0.083 4.083
28 C -0.192 4.192
29 C -0.025 4.025
30 N -0.169 5.169
31 H 0.086 0.914
32 H 0.075 0.925
33 H 0.079 0.921
34 H 0.096 0.904
35 H 0.090 0.910
36 H 0.058 0.942
37 H 0.076 0.924
38 H 0.065 0.935
39 H 0.192 0.808
40 H 0.069 0.931
41 H 0.250 0.750
42 H 0.174 0.826
43 H 0.199 0.801
44 H 0.195 0.805
45 H 0.230 0.770
46 H 0.166 0.834
47 H 0.194 0.806
Dipole moment (debyes) X Y Z Total
from point charges -12.156 3.284 21.538 24.948
hybrid contribution -0.120 -1.258 -0.668 1.429
sum -12.276 2.026 20.870 24.297
Atomic orbital electron populations
1.22179 0.95258 1.02147 1.02490 1.21161 0.93738 0.97887 0.83457
0.88748 1.22241 0.98102 1.00933 0.96310 1.20171 0.90185 0.90726
0.92061 0.92730 1.22458 1.02204 0.98336 0.99697 1.42773 1.11666
1.63210 1.21560 1.19039 0.86634 1.29530 1.01733 0.89367 1.24668
0.95624 1.01373 0.97586 1.69719 1.11658 1.45888 1.30878 0.86538
0.80673 0.78020 0.83388 1.21242 1.21834 1.20287 1.45962 1.64613
1.15233 1.08594 1.17688 0.78774 0.85559 0.82483 1.90789 1.49349
1.17070 1.83728 1.21135 0.96848 0.91039 0.93282 1.21743 1.00609
1.02263 0.90950 1.17945 0.97784 0.93011 0.83942 1.43217 1.44301
1.15280 1.06768 1.22844 1.07281 1.02717 0.85307 1.22449 1.03101
0.90610 1.00163 1.70387 1.16747 1.26874 1.05777 1.25505 1.02174
0.86075 0.94521 1.22125 1.02204 0.94067 1.00810 1.22825 0.93428
0.99770 0.86521 1.67687 1.07941 1.07835 1.33417 0.91448 0.92460
0.92143 0.90415 0.91039 0.94172 0.92428 0.93538 0.80779 0.93135
0.74965 0.82572 0.80138 0.80514 0.77019 0.83384 0.80622
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.74 9.48 37.16 0.35 -1.39 16
2 C 0.14 1.77 2.40 -67.93 -0.16 1.61 16
3 H 0.09 1.30 5.87 -51.93 -0.30 0.99 16
4 C -0.14 -1.93 4.39 -26.74 -0.12 -2.05 16
5 C 0.18 3.25 2.91 -67.93 -0.20 3.05 16
6 H 0.05 1.06 7.59 -51.93 -0.39 0.66 16
7 C -0.17 -2.96 9.24 37.16 0.34 -2.61 16
8 N -0.75 -17.10 4.94 -53.43 -0.26 -17.37 16
9 C -0.24 -6.62 10.39 -15.06 -0.16 -6.77 16
10 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16
11 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16
12 N -0.93 -29.07 13.97 55.49 0.78 -28.29 16
13 Si 0.88 21.78 27.74 -169.99 -4.72 17.06 16
14 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16
15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16
16 H -0.28 -6.35 6.53 56.52 0.37 -5.98 16
17 N -0.69 -8.65 4.45 -54.65 -0.24 -8.90 16
18 C 0.57 7.49 7.75 -12.18 -0.09 7.40 16
19 O -0.53 -8.05 15.93 5.36 0.09 -7.96 16
20 C 0.12 1.32 6.74 -83.04 -0.56 0.76 16
21 C -0.13 -1.29 9.06 -38.87 -0.35 -1.64 16
22 C 0.17 1.47 6.67 -83.37 -0.56 0.92 16
23 N -0.42 -3.48 2.99 -61.91 -0.18 -3.67 16
24 C -0.05 -0.37 10.89 -16.45 -0.18 -0.55 16
25 C -0.02 -0.15 11.85 -17.82 -0.21 -0.36 16
26 N -0.48 -5.06 11.24 -14.47 -0.16 -5.22 16
27 C 0.20 1.78 11.95 -89.60 -1.07 0.71 16
28 C -0.17 -1.15 9.55 -39.16 -0.37 -1.52 16
29 C 0.13 1.04 11.17 -17.62 -0.20 0.85 16
30 N -0.46 -4.91 9.57 -9.87 -0.09 -5.00 16
31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16
32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
33 H 0.06 0.69 8.01 -51.93 -0.42 0.27 16
34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16
35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
36 H 0.04 0.63 6.46 -51.93 -0.34 0.29 16
37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
39 H 0.36 8.05 5.68 -40.82 -0.23 7.82 16
40 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16
41 H 0.41 5.00 7.97 -40.82 -0.33 4.68 16
42 H 0.16 1.38 6.50 -52.49 -0.34 1.04 16
43 H 0.18 0.66 7.23 -52.49 -0.38 0.28 16
44 H 0.18 0.97 8.06 -52.48 -0.42 0.55 16
45 H 0.21 1.35 7.15 -52.49 -0.38 0.98 16
46 H 0.15 0.57 6.94 -52.49 -0.36 0.20 16
47 H 0.18 0.87 8.06 -52.48 -0.42 0.45 16
LS Contribution 392.24 15.07 5.91 5.91
Total: -1.00 -35.23 392.24 -8.96 -44.19
By element:
Atomic # 1 Polarization: 17.29 SS G_CDS: -6.44 Total: 10.85 kcal
Atomic # 6 Polarization: 2.03 SS G_CDS: -3.63 Total: -1.60 kcal
Atomic # 7 Polarization: -68.28 SS G_CDS: -0.17 Total: -68.45 kcal
Atomic # 8 Polarization: -8.05 SS G_CDS: 0.09 Total: -7.96 kcal
Atomic # 14 Polarization: 21.78 SS G_CDS: -4.72 Total: 17.06 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -35.23 -8.96 -44.19 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001135852223.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 125.752 kcal
(2) G-P(sol) polarization free energy of solvation -35.228 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.523 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.190 kcal
(6) G-S(sol) free energy of system = (1) + (5) 81.561 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds