Wall clock time and date at job start Sat Apr 11 2020 06:59:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47149 * 2 1
4 4 C 1.53000 * 109.47084 * 239.99986 * 2 1 3
5 5 C 1.52992 * 109.47542 * 174.37262 * 4 2 1
6 6 H 1.09004 * 109.46990 * 54.74477 * 5 4 2
7 7 C 1.53007 * 109.47343 * 294.75063 * 5 4 2
8 8 N 1.46501 * 109.47610 * 174.74941 * 5 4 2
9 9 C 1.36937 * 119.99954 * 203.26494 * 8 5 4
10 10 H 1.07997 * 119.99961 * 4.66575 * 9 8 5
11 11 C 1.38811 * 119.99695 * 184.39820 * 9 8 5
12 12 N 1.31618 * 119.99929 * 173.89165 * 11 9 8
13 13 Si 1.86798 * 119.99930 * 353.88457 * 11 9 8
14 14 H 1.48495 * 109.47182 * 93.51300 * 13 11 9
15 15 H 1.48507 * 109.46735 * 213.50837 * 13 11 9
16 16 H 1.48498 * 109.47422 * 333.50650 * 13 11 9
17 17 N 1.46497 * 109.47090 * 120.00182 * 2 1 3
18 18 C 1.34776 * 119.99916 * 275.65311 * 17 2 1
19 19 O 1.21508 * 119.99837 * 5.31961 * 18 17 2
20 20 C 1.48181 * 119.99959 * 185.32339 * 18 17 2
21 21 C 1.39125 * 119.69514 * 185.15362 * 20 18 17
22 22 C 1.39269 * 118.97688 * 179.75264 * 21 20 18
23 23 N 1.39972 * 120.82008 * 180.29029 * 22 21 20
24 24 C 1.37159 * 126.47910 * 180.22934 * 23 22 21
25 25 C 1.34626 * 106.82509 * 180.02562 * 24 23 22
26 26 N 1.34155 * 108.21388 * 359.97438 * 25 24 23
27 27 C 1.30485 * 109.36243 * 359.72796 * 26 25 24
28 28 C 1.39270 * 118.35872 * 0.51337 * 22 21 20
29 29 C 1.38335 * 119.27424 * 359.75029 * 28 22 21
30 30 N 1.31591 * 120.98255 * 359.97438 * 29 28 22
31 31 H 1.09000 * 109.47631 * 60.00045 * 1 2 3
32 32 H 1.09002 * 109.47149 * 179.97438 * 1 2 3
33 33 H 1.09001 * 109.46971 * 299.99918 * 1 2 3
34 34 H 1.09003 * 109.47178 * 54.37205 * 4 2 1
35 35 H 1.08996 * 109.47260 * 294.37746 * 4 2 1
36 36 H 1.09005 * 109.47061 * 59.99213 * 7 5 4
37 37 H 1.08997 * 109.47470 * 179.97438 * 7 5 4
38 38 H 1.09000 * 109.46841 * 300.00101 * 7 5 4
39 39 H 0.96999 * 119.99642 * 23.25889 * 8 5 4
40 40 H 0.96996 * 120.00302 * 179.97438 * 12 11 9
41 41 H 0.97000 * 119.99883 * 95.65458 * 17 2 1
42 42 H 1.07999 * 120.50823 * 0.02562 * 21 20 18
43 43 H 1.07996 * 126.58924 * 359.96454 * 24 23 22
44 44 H 1.08003 * 125.89175 * 180.02562 * 25 24 23
45 45 H 1.07999 * 125.72069 * 180.26571 * 27 26 25
46 46 H 1.07998 * 120.35748 * 179.72896 * 28 22 21
47 47 H 1.08006 * 119.50748 * 179.97438 * 29 28 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7213 -1.2492
5 6 3.5633 -0.6000 -1.3221
6 1 4.0018 -0.9675 -0.3943
7 6 3.9492 0.8670 -1.5224
8 7 4.0633 -1.3944 -2.4469
9 6 5.3592 -1.8369 -2.4500
10 1 5.9905 -1.6654 -1.5907
11 6 5.8598 -2.5108 -3.5555
12 7 7.1355 -2.8301 -3.6096
13 14 4.7227 -2.9647 -4.9664
14 1 4.7667 -1.8993 -5.9999
15 1 5.1633 -4.2514 -5.5628
16 1 3.3345 -3.1043 -4.4581
17 7 2.0183 -0.6906 1.1961
18 6 2.1345 -0.0216 2.3603
19 8 1.7442 1.1261 2.4430
20 6 2.7383 -0.6856 3.5394
21 6 2.7578 -0.0287 4.7656
22 6 3.3243 -0.6688 5.8651
23 7 3.3590 -0.0460 7.1181
24 6 3.8893 -0.5644 8.2720
25 6 3.7109 0.3613 9.2331
26 7 3.0901 1.4180 8.6874
27 6 2.8794 1.1891 7.4202
28 6 3.8596 -1.9419 5.6859
29 6 3.8075 -2.5276 4.4338
30 7 3.2606 -1.9000 3.4146
31 1 -0.3634 0.5138 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 -0.3633 0.5138 0.8900
34 1 1.5967 -0.2689 -2.1364
35 1 1.7612 -1.7738 -1.2003
36 1 3.5772 1.4581 -0.6856
37 1 5.0346 0.9535 -1.5739
38 1 3.5107 1.2346 -2.4501
39 1 3.4764 -1.6070 -3.1893
40 1 7.4852 -3.3013 -4.3819
41 1 2.2580 -1.6294 1.1502
42 1 2.3361 0.9607 4.8643
43 1 4.3587 -1.5301 8.3876
44 1 4.0157 0.2694 10.2651
45 1 2.4009 1.8662 6.7282
46 1 4.3107 -2.4660 6.5155
47 1 4.2219 -3.5147 4.2905
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001135852223.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:59:32
Heat of formation + Delta-G solvation = 58.641957 kcal
Electronic energy + Delta-G solvation = -29013.763289 eV
Core-core repulsion = 25004.375123 eV
Total energy + Delta-G solvation = -4009.388166 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-43.47273 -41.70936 -40.33524 -38.45322 -36.34281 -36.01890 -34.08959 -33.06879
-32.21964 -31.51125 -30.68651 -30.47739 -27.65789 -26.20314 -25.47997 -25.28638
-23.33936 -22.38110 -22.01176 -21.58637 -21.21124 -20.15117 -19.55945 -18.22598
-17.56026 -17.08816 -16.87316 -16.79521 -16.69734 -16.24449 -15.95665 -15.73541
-15.38890 -15.23475 -15.01706 -14.93842 -14.76709 -14.62421 -14.38078 -14.33951
-13.91849 -13.49541 -13.33981 -13.11770 -13.02255 -12.81613 -12.73001 -12.42320
-12.26514 -12.06645 -11.82644 -11.62450 -11.49815 -11.48771 -11.25458 -10.95954
-10.78376 -10.52894 -10.22158 -10.07203 -9.63137 -9.29816 -7.99432 -5.31951
-0.66553 -0.36106 1.09516 1.36363 1.40573 1.43899 1.51764 1.65351
2.01869 2.03237 2.51837 2.68011 3.01470 3.30873 3.32888 3.42382
3.45340 3.61524 3.76732 3.79140 3.97748 4.06186 4.14363 4.21635
4.34155 4.44002 4.44572 4.47534 4.51832 4.56625 4.64384 4.67278
4.80796 4.91708 4.94923 5.04195 5.08575 5.13419 5.26181 5.32529
5.38789 5.44228 5.58983 5.63305 5.81378 6.00683 6.24717 6.33938
6.65805 6.86325 7.06101 7.11969 7.88127 8.08672 9.22328
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.015268 B = 0.002328 C = 0.002137
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1833.474662 B =12025.444783 C =13098.374554
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.145 3.855
3 H 0.082 0.918
4 C -0.123 4.123
5 C 0.173 3.827
6 H 0.039 0.961
7 C -0.159 4.159
8 N -0.749 5.749
9 C -0.223 4.223
10 H 0.050 0.950
11 C -0.068 4.068
12 N -0.986 5.986
13 Si 0.956 3.044
14 H -0.283 1.283
15 H -0.299 1.299
16 H -0.244 1.244
17 N -0.692 5.692
18 C 0.568 3.432
19 O -0.561 6.561
20 C 0.093 3.907
21 C -0.136 4.136
22 C 0.168 3.832
23 N -0.418 5.418
24 C -0.044 4.044
25 C -0.040 4.040
26 N -0.515 5.515
27 C 0.182 3.818
28 C -0.149 4.149
29 C 0.129 3.871
30 N -0.479 5.479
31 H 0.083 0.917
32 H 0.066 0.934
33 H 0.051 0.949
34 H 0.095 0.905
35 H 0.078 0.922
36 H 0.060 0.940
37 H 0.024 0.976
38 H 0.056 0.944
39 H 0.366 0.634
40 H 0.256 0.744
41 H 0.415 0.585
42 H 0.156 0.844
43 H 0.219 0.781
44 H 0.197 0.803
45 H 0.225 0.775
46 H 0.186 0.814
47 H 0.206 0.794
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.669 1.009 22.370 26.235
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C 0.041 3.959
3 H 0.100 0.900
4 C -0.162 4.162
5 C 0.065 3.935
6 H 0.057 0.943
7 C -0.219 4.219
8 N -0.393 5.393
9 C -0.355 4.355
10 H 0.068 0.932
11 C -0.259 4.259
12 N -0.637 5.637
13 Si 0.783 3.217
14 H -0.210 1.210
15 H -0.226 1.226
16 H -0.168 1.168
17 N -0.343 5.343
18 C 0.353 3.647
19 O -0.440 6.440
20 C -0.045 4.045
21 C -0.159 4.159
22 C 0.067 3.933
23 N -0.098 5.098
24 C -0.172 4.172
25 C -0.184 4.184
26 N -0.232 5.232
27 C -0.099 4.099
28 C -0.171 4.171
29 C -0.031 4.031
30 N -0.191 5.191
31 H 0.102 0.898
32 H 0.086 0.914
33 H 0.070 0.930
34 H 0.113 0.887
35 H 0.097 0.903
36 H 0.078 0.922
37 H 0.043 0.957
38 H 0.075 0.925
39 H 0.200 0.800
40 H 0.065 0.935
41 H 0.252 0.748
42 H 0.173 0.827
43 H 0.235 0.765
44 H 0.214 0.786
45 H 0.241 0.759
46 H 0.203 0.797
47 H 0.223 0.777
Dipole moment (debyes) X Y Z Total
from point charges -14.000 2.107 22.030 26.187
hybrid contribution 0.525 -0.868 -0.634 1.196
sum -13.475 1.239 21.395 25.315
Atomic orbital electron populations
1.22103 0.93371 1.02927 1.02848 1.21104 0.95097 0.96880 0.82803
0.89987 1.22095 0.94376 1.01890 0.97802 1.20352 0.93182 0.90100
0.89835 0.94274 1.22340 1.00089 0.98297 1.01151 1.42749 1.09965
1.63551 1.23048 1.18946 0.88143 1.28249 1.00125 0.93188 1.25524
0.97229 1.02180 1.00960 1.69911 1.14091 1.47660 1.31997 0.85374
0.79904 0.77032 0.79372 1.20980 1.22566 1.16849 1.45979 1.64463
1.15260 1.08578 1.17998 0.78312 0.85306 0.83084 1.90758 1.50689
1.18194 1.84314 1.20870 0.98656 0.91869 0.93068 1.21759 1.00747
1.02354 0.91070 1.18034 0.97993 0.93665 0.83614 1.43296 1.44316
1.15173 1.07044 1.23456 1.05944 1.03633 0.84200 1.22924 1.03467
0.90486 1.01544 1.70356 1.17872 1.28363 1.06650 1.25805 1.02704
0.86843 0.94575 1.22517 1.00126 0.92996 1.01459 1.23389 0.92713
1.00674 0.86285 1.67632 1.08694 1.07794 1.35029 0.89848 0.91447
0.93027 0.88671 0.90298 0.92153 0.95657 0.92462 0.80035 0.93508
0.74774 0.82671 0.76489 0.78561 0.75902 0.79662 0.77745
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.97 9.48 71.98 0.68 -2.29 16
2 C 0.15 3.43 2.40 44.99 0.11 3.54 16
3 H 0.08 2.17 5.87 -2.39 -0.01 2.15 16
4 C -0.12 -3.18 4.39 30.59 0.13 -3.05 16
5 C 0.17 6.19 2.91 44.99 0.13 6.32 16
6 H 0.04 1.53 7.59 -2.39 -0.02 1.51 16
7 C -0.16 -5.56 9.24 71.98 0.67 -4.89 16
8 N -0.75 -33.46 4.94 -322.94 -1.60 -35.06 16
9 C -0.22 -12.53 10.39 84.03 0.87 -11.66 16
10 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16
11 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16
12 N -0.99 -63.03 13.97 21.65 0.30 -62.72 16
13 Si 0.96 44.55 27.74 68.60 1.90 46.45 16
14 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16
15 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16
16 H -0.24 -9.97 6.53 99.48 0.65 -9.32 16
17 N -0.69 -17.00 4.45 -445.10 -1.98 -18.98 16
18 C 0.57 15.08 7.75 86.89 0.67 15.76 16
19 O -0.56 -17.30 15.93 -3.74 -0.06 -17.36 16
20 C 0.09 2.12 6.74 41.86 0.28 2.40 16
21 C -0.14 -2.63 9.06 22.73 0.21 -2.43 16
22 C 0.17 2.58 6.67 38.34 0.26 2.84 16
23 N -0.42 -6.39 2.99 -349.79 -1.04 -7.44 16
24 C -0.04 -0.51 10.89 83.03 0.90 0.39 16
25 C -0.04 -0.60 11.85 83.51 0.99 0.39 16
26 N -0.52 -10.72 11.24 -199.69 -2.25 -12.97 16
27 C 0.18 3.24 11.95 179.99 2.15 5.39 16
28 C -0.15 -1.58 9.55 22.54 0.22 -1.36 16
29 C 0.13 1.72 11.17 84.75 0.95 2.67 16
30 N -0.48 -9.94 9.57 -185.13 -1.77 -11.71 16
31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16
32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16
33 H 0.05 1.11 8.01 -2.39 -0.02 1.09 16
34 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16
35 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16
36 H 0.06 1.85 6.46 -2.38 -0.02 1.84 16
37 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16
38 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16
39 H 0.37 15.41 5.68 -92.71 -0.53 14.89 16
40 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16
41 H 0.42 9.87 7.97 -92.71 -0.74 9.13 16
42 H 0.16 2.88 6.50 -2.91 -0.02 2.86 16
43 H 0.22 0.64 7.23 -2.91 -0.02 0.62 16
44 H 0.20 1.85 8.06 -2.91 -0.02 1.83 16
45 H 0.22 3.01 7.15 -2.91 -0.02 2.99 16
46 H 0.19 0.50 6.94 -2.91 -0.02 0.48 16
47 H 0.21 1.39 8.06 -2.91 -0.02 1.37 16
Total: -1.00 -79.18 392.24 2.88 -76.30
By element:
Atomic # 1 Polarization: 33.25 SS G_CDS: -0.31 Total: 32.95 kcal
Atomic # 6 Polarization: 0.85 SS G_CDS: 9.68 Total: 10.54 kcal
Atomic # 7 Polarization: -140.54 SS G_CDS: -8.34 Total: -148.88 kcal
Atomic # 8 Polarization: -17.30 SS G_CDS: -0.06 Total: -17.36 kcal
Atomic # 14 Polarization: 44.55 SS G_CDS: 1.90 Total: 46.45 kcal
Total: -79.18 2.88 -76.30 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001135852223.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 134.942 kcal
(2) G-P(sol) polarization free energy of solvation -79.184 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.758 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.300 kcal
(6) G-S(sol) free energy of system = (1) + (5) 58.642 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds