Wall clock time and date at job start Sat Apr 11 2020 06:58:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09002 * 109.49481 * 2 1
4 4 C 1.53193 * 109.49781 * 239.93985 * 2 1 3
5 5 N 1.46924 * 108.77398 * 294.68037 * 4 2 1
6 6 C 1.34777 * 120.63402 * 126.36603 * 5 4 2
7 7 O 1.21585 * 119.99553 * 3.77914 * 6 5 4
8 8 C 1.47595 * 120.00443 * 183.50371 * 6 5 4
9 9 C 1.41823 * 119.98185 * 309.63437 * 8 6 5
10 10 C 1.35639 * 119.60186 * 179.97438 * 9 8 6
11 11 C 1.41051 * 119.40200 * 0.02562 * 10 9 8
12 12 N 1.32186 * 133.25565 * 179.97438 * 11 10 9
13 13 N 1.28649 * 109.56150 * 180.02562 * 12 11 10
14 14 C 1.30722 * 110.34787 * 359.97438 * 13 12 11
15 15 N 1.36249 * 107.44909 * 0.02562 * 14 13 12
16 16 C 1.35853 * 133.52811 * 180.28297 * 15 14 13
17 17 C 1.46925 * 118.74065 * 306.64742 * 5 4 2
18 18 C 1.52759 * 109.01042 * 53.30400 * 17 5 4
19 19 C 1.53031 * 109.49948 * 120.09797 * 2 1 3
20 20 H 1.09004 * 109.46225 * 178.60740 * 19 2 1
21 21 C 1.53002 * 109.46264 * 298.56376 * 19 2 1
22 22 N 1.46500 * 109.47317 * 185.00234 * 21 19 2
23 23 C 1.36937 * 120.00009 * 180.02562 * 22 21 19
24 24 H 1.08003 * 119.99663 * 0.02562 * 23 22 21
25 25 C 1.38812 * 120.00128 * 179.97438 * 23 22 21
26 26 N 1.31620 * 119.99791 * 0.02562 * 25 23 22
27 27 Si 1.86800 * 119.99849 * 180.02562 * 25 23 22
28 28 H 1.48497 * 109.47319 * 60.00202 * 27 25 23
29 29 H 1.48504 * 109.46905 * 179.97438 * 27 25 23
30 30 H 1.48497 * 109.47190 * 299.99872 * 27 25 23
31 31 H 1.09000 * 109.47094 * 180.02562 * 1 2 3
32 32 H 1.09003 * 109.46980 * 300.06683 * 1 2 3
33 33 H 1.09002 * 109.47211 * 60.06330 * 1 2 3
34 34 H 1.08996 * 109.59091 * 174.89378 * 4 2 1
35 35 H 1.09003 * 109.58907 * 54.46973 * 4 2 1
36 36 H 1.08001 * 120.19746 * 359.97438 * 9 8 6
37 37 H 1.07995 * 120.29397 * 179.97438 * 10 9 8
38 38 H 1.07994 * 126.27267 * 179.97438 * 14 13 12
39 39 H 1.07999 * 119.80465 * 359.94279 * 16 15 14
40 40 H 1.08993 * 109.59390 * 173.14371 * 17 5 4
41 41 H 1.09003 * 109.58500 * 293.56921 * 17 5 4
42 42 H 1.08999 * 109.56978 * 185.56029 * 18 17 5
43 43 H 1.08998 * 109.38454 * 65.51938 * 18 17 5
44 44 H 1.09004 * 109.46958 * 305.00023 * 21 19 2
45 45 H 1.09000 * 109.47077 * 64.99970 * 21 19 2
46 46 H 0.96997 * 120.00116 * 359.97438 * 22 21 19
47 47 H 0.97000 * 119.99466 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8937 1.0275 0.0000
4 6 2.0413 -0.7234 -1.2498
5 7 1.6516 -2.1377 -1.1703
6 6 0.9740 -2.7211 -2.1787
7 8 0.7394 -2.0963 -3.1950
8 6 0.5219 -4.1204 -2.0519
9 6 1.4368 -5.1272 -1.6509
10 6 1.0130 -6.4106 -1.5363
11 6 -0.3331 -6.7231 -1.8189
12 7 -1.0250 -7.8493 -1.7988
13 7 -2.2418 -7.6135 -2.1436
14 6 -2.4029 -6.3421 -2.4015
15 7 -1.2013 -5.7301 -2.2061
16 6 -0.7777 -4.4440 -2.3154
17 6 2.0091 -2.9025 0.0322
18 6 1.5031 -2.1561 1.2653
19 6 2.0408 -0.7234 1.2480
20 1 3.1306 -0.7447 1.2350
21 6 1.5608 0.0163 2.4984
22 7 2.1469 -0.6050 3.6886
23 6 1.8580 -0.1097 4.9322
24 1 1.1977 0.7387 5.0354
25 6 2.4130 -0.6987 6.0600
26 7 3.2173 -1.7329 5.9340
27 14 2.0183 -0.0234 7.7563
28 1 0.5545 -0.1041 7.9930
29 1 2.7304 -0.8231 8.7854
30 1 2.4558 1.3932 7.8393
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3633 0.5149 0.8894
33 1 -0.3634 0.5129 -0.8906
34 1 3.1274 -0.6458 -1.2983
35 1 1.6007 -0.2724 -2.1390
36 1 2.4648 -4.8735 -1.4381
37 1 1.7003 -7.1861 -1.2322
38 1 -3.3200 -5.8646 -2.7131
39 1 -1.4723 -3.6737 -2.6164
40 1 1.5474 -3.8888 -0.0112
41 1 3.0926 -3.0062 0.0905
42 1 1.8482 -2.6634 2.1662
43 1 0.4133 -2.1358 1.2540
44 1 1.8697 1.0602 2.4440
45 1 0.4738 -0.0383 2.5580
46 1 2.7391 -1.3676 3.5959
47 1 3.6048 -2.1447 6.7222
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001185281221.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:58:27
Heat of formation + Delta-G solvation = 93.725421 kcal
Electronic energy + Delta-G solvation = -30102.406546 eV
Core-core repulsion = 26094.539713 eV
Total energy + Delta-G solvation = -4007.866833 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-43.95408 -40.92977 -38.79893 -37.82711 -35.22158 -34.54467 -33.50307 -32.12593
-31.55385 -30.44956 -29.87969 -27.28701 -27.08360 -25.04208 -24.36315 -23.60702
-23.07950 -22.90046 -21.66997 -20.56071 -19.06212 -18.48943 -17.90720 -17.29943
-16.95642 -16.88435 -16.46292 -15.70785 -15.41375 -15.32997 -15.08069 -14.64079
-14.45858 -14.08051 -13.87705 -13.71123 -13.46948 -13.13637 -12.87570 -12.69088
-12.63783 -12.45096 -12.31046 -12.08584 -11.76342 -11.71186 -11.43568 -11.13115
-11.00867 -10.98600 -10.82734 -10.53524 -10.43700 -10.32348 -10.20525 -10.06842
-9.86600 -9.70166 -8.91175 -8.85125 -8.60636 -6.96881 -5.82173 -3.10354
0.02713 0.47620 1.70884 2.09475 2.42672 2.65351 2.90977 3.40252
3.45154 3.45731 3.59550 3.85616 4.00837 4.14258 4.26653 4.44004
4.53369 4.62771 4.73640 4.86339 4.87387 4.97795 5.09998 5.13148
5.31538 5.32249 5.42955 5.47650 5.52415 5.53030 5.57196 5.64925
5.70192 5.71378 5.77129 5.93010 5.97697 6.05436 6.17271 6.25298
6.29462 6.32953 6.35230 6.54655 6.71935 6.84408 7.05438 7.64726
7.72603 8.10596 8.37326 9.48540 10.05984 10.40345 11.40674
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.012150 B = 0.002740 C = 0.002415
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2303.968053 B =10218.321424 C =11590.091455
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.099 4.099
3 H 0.085 0.915
4 C 0.117 3.883
5 N -0.591 5.591
6 C 0.570 3.430
7 O -0.534 6.534
8 C -0.139 4.139
9 C -0.069 4.069
10 C -0.076 4.076
11 C 0.201 3.799
12 N -0.287 5.287
13 N -0.251 5.251
14 C 0.126 3.874
15 N -0.396 5.396
16 C 0.125 3.875
17 C 0.095 3.905
18 C -0.128 4.128
19 C -0.089 4.089
20 H 0.073 0.927
21 C 0.158 3.842
22 N -0.732 5.732
23 C -0.240 4.240
24 H 0.068 0.932
25 C -0.013 4.013
26 N -0.934 5.934
27 Si 0.906 3.094
28 H -0.286 1.286
29 H -0.291 1.291
30 H -0.286 1.286
31 H 0.053 0.947
32 H 0.063 0.937
33 H 0.048 0.952
34 H 0.072 0.928
35 H 0.093 0.907
36 H 0.156 0.844
37 H 0.166 0.834
38 H 0.230 0.770
39 H 0.180 0.820
40 H 0.087 0.913
41 H 0.078 0.922
42 H 0.090 0.910
43 H 0.067 0.933
44 H 0.018 0.982
45 H 0.021 0.979
46 H 0.383 0.617
47 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.751 -3.952 -19.748 20.693
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.119 4.119
3 H 0.103 0.897
4 C -0.004 4.004
5 N -0.322 5.322
6 C 0.356 3.644
7 O -0.412 6.412
8 C -0.146 4.146
9 C -0.093 4.093
10 C -0.097 4.097
11 C -0.049 4.049
12 N -0.132 5.132
13 N -0.089 5.089
14 C -0.156 4.156
15 N -0.076 5.076
16 C 0.000 4.000
17 C -0.027 4.027
18 C -0.166 4.166
19 C -0.108 4.108
20 H 0.091 0.909
21 C 0.031 3.969
22 N -0.376 5.376
23 C -0.371 4.371
24 H 0.086 0.914
25 C -0.209 4.209
26 N -0.583 5.583
27 Si 0.737 3.263
28 H -0.213 1.213
29 H -0.217 1.217
30 H -0.213 1.213
31 H 0.072 0.928
32 H 0.082 0.918
33 H 0.067 0.933
34 H 0.090 0.910
35 H 0.111 0.889
36 H 0.174 0.826
37 H 0.183 0.817
38 H 0.246 0.754
39 H 0.197 0.803
40 H 0.105 0.895
41 H 0.096 0.904
42 H 0.109 0.891
43 H 0.086 0.914
44 H 0.035 0.965
45 H 0.038 0.962
46 H 0.217 0.783
47 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -5.434 -5.134 -19.987 21.339
hybrid contribution 0.214 1.499 0.964 1.795
sum -5.220 -3.635 -19.023 20.058
Atomic orbital electron populations
1.21872 0.94940 1.01816 1.01669 1.21487 0.96646 0.99663 0.94058
0.89705 1.21785 0.99880 0.79312 0.99469 1.48010 1.54621 1.12022
1.17590 1.17674 0.78310 0.84938 0.83429 1.90830 1.57148 1.64477
1.28724 1.19487 0.93367 0.95770 1.05980 1.21278 1.00641 0.91139
0.96275 1.20221 0.90606 0.97663 1.01241 1.22574 0.94186 0.85431
1.02675 1.74961 0.98173 1.19318 1.20741 1.74200 1.10421 1.12130
1.12122 1.26665 0.89911 0.90530 1.08495 1.43839 1.11122 1.08385
1.44256 1.21507 0.96365 0.84357 0.97743 1.22134 1.00974 0.95340
0.84263 1.21903 1.01437 0.96154 0.97114 1.21316 1.00372 0.94531
0.94564 0.90857 1.20706 0.95893 0.94676 0.85631 1.42360 1.56896
1.37532 1.00829 1.19169 1.23202 1.10928 0.83832 0.91362 1.24716
1.00017 0.98330 0.97809 1.69633 1.35613 1.24285 1.28740 0.86284
0.77673 0.78082 0.84246 1.21300 1.21662 1.21285 0.92804 0.91773
0.93252 0.90960 0.88909 0.82608 0.81696 0.75364 0.80339 0.89455
0.90423 0.89129 0.91403 0.96459 0.96152 0.78317 0.93455
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.62 8.38 37.16 0.31 -1.31 16
2 C -0.10 -1.08 2.72 -90.51 -0.25 -1.33 16
3 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16
4 C 0.12 1.16 5.82 -3.71 -0.02 1.14 16
5 N -0.59 -5.77 2.42 -174.24 -0.42 -6.19 16
6 C 0.57 5.94 7.21 -12.44 -0.09 5.85 16
7 O -0.53 -7.11 16.46 5.29 0.09 -7.02 16
8 C -0.14 -1.21 4.95 -105.34 -0.52 -1.73 16
9 C -0.07 -0.50 7.36 -39.14 -0.29 -0.79 16
10 C -0.08 -0.61 10.09 -39.45 -0.40 -1.01 16
11 C 0.20 2.19 7.92 -155.94 -1.23 0.95 16
12 N -0.29 -3.84 12.29 31.19 0.38 -3.46 16
13 N -0.25 -3.14 12.18 29.87 0.36 -2.78 16
14 C 0.13 1.12 12.97 -89.08 -1.16 -0.04 16
15 N -0.40 -3.69 2.94 -63.63 -0.19 -3.88 16
16 C 0.13 1.01 10.63 -16.40 -0.17 0.84 16
17 C 0.09 0.89 5.33 -3.93 -0.02 0.87 16
18 C -0.13 -1.61 4.89 -26.83 -0.13 -1.74 16
19 C -0.09 -1.20 1.96 -90.58 -0.18 -1.38 16
20 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16
21 C 0.16 2.89 5.19 -4.04 -0.02 2.86 16
22 N -0.73 -17.28 5.32 -59.91 -0.32 -17.60 16
23 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16
24 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16
25 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16
26 N -0.93 -27.22 13.06 55.49 0.72 -26.49 16
27 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16
28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
29 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
30 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
31 H 0.05 0.62 5.97 -51.93 -0.31 0.31 16
32 H 0.06 0.77 6.59 -51.93 -0.34 0.43 16
33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
35 H 0.09 0.97 7.02 -51.93 -0.36 0.60 16
36 H 0.16 0.82 7.10 -52.49 -0.37 0.44 16
37 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16
38 H 0.23 0.91 8.06 -52.49 -0.42 0.49 16
39 H 0.18 1.06 8.06 -52.49 -0.42 0.63 16
40 H 0.09 0.72 4.56 -51.93 -0.24 0.48 16
41 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16
42 H 0.09 1.37 7.15 -51.93 -0.37 0.99 16
43 H 0.07 0.89 6.33 -51.93 -0.33 0.56 16
44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16
45 H 0.02 0.39 6.74 -51.93 -0.35 0.04 16
46 H 0.38 9.38 6.84 -40.82 -0.28 9.10 16
47 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16
LS Contribution 373.93 15.07 5.63 5.63
Total: -1.00 -34.40 373.93 -9.48 -43.88
By element:
Atomic # 1 Polarization: 11.23 SS G_CDS: -6.31 Total: 4.92 kcal
Atomic # 6 Polarization: 0.52 SS G_CDS: -4.41 Total: -3.90 kcal
Atomic # 7 Polarization: -60.93 SS G_CDS: 0.55 Total: -60.39 kcal
Atomic # 8 Polarization: -7.11 SS G_CDS: 0.09 Total: -7.02 kcal
Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -34.40 -9.48 -43.88 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001185281221.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 137.604 kcal
(2) G-P(sol) polarization free energy of solvation -34.400 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.204 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.879 kcal
(6) G-S(sol) free energy of system = (1) + (5) 93.725 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds