Wall clock time and date at job start Sat Apr 11 2020 06:58:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09002 * 109.49481 * 2 1
4 4 C 1.53193 * 109.49781 * 239.93985 * 2 1 3
5 5 N 1.46924 * 108.77398 * 294.68037 * 4 2 1
6 6 C 1.34777 * 120.63402 * 126.36603 * 5 4 2
7 7 O 1.21585 * 119.99553 * 3.77914 * 6 5 4
8 8 C 1.47595 * 120.00443 * 183.50371 * 6 5 4
9 9 C 1.41823 * 119.98185 * 309.63437 * 8 6 5
10 10 C 1.35639 * 119.60186 * 179.97438 * 9 8 6
11 11 C 1.41051 * 119.40200 * 0.02562 * 10 9 8
12 12 N 1.32186 * 133.25565 * 179.97438 * 11 10 9
13 13 N 1.28649 * 109.56150 * 180.02562 * 12 11 10
14 14 C 1.30722 * 110.34787 * 359.97438 * 13 12 11
15 15 N 1.36249 * 107.44909 * 0.02562 * 14 13 12
16 16 C 1.35853 * 133.52811 * 180.28297 * 15 14 13
17 17 C 1.46925 * 118.74065 * 306.64742 * 5 4 2
18 18 C 1.52759 * 109.01042 * 53.30400 * 17 5 4
19 19 C 1.53031 * 109.49948 * 120.09797 * 2 1 3
20 20 H 1.09004 * 109.46225 * 178.60740 * 19 2 1
21 21 C 1.53002 * 109.46264 * 298.56376 * 19 2 1
22 22 N 1.46500 * 109.47317 * 185.00234 * 21 19 2
23 23 C 1.36937 * 120.00009 * 180.02562 * 22 21 19
24 24 H 1.08003 * 119.99663 * 0.02562 * 23 22 21
25 25 C 1.38812 * 120.00128 * 179.97438 * 23 22 21
26 26 N 1.31620 * 119.99791 * 0.02562 * 25 23 22
27 27 Si 1.86800 * 119.99849 * 180.02562 * 25 23 22
28 28 H 1.48497 * 109.47319 * 60.00202 * 27 25 23
29 29 H 1.48504 * 109.46905 * 179.97438 * 27 25 23
30 30 H 1.48497 * 109.47190 * 299.99872 * 27 25 23
31 31 H 1.09000 * 109.47094 * 180.02562 * 1 2 3
32 32 H 1.09003 * 109.46980 * 300.06683 * 1 2 3
33 33 H 1.09002 * 109.47211 * 60.06330 * 1 2 3
34 34 H 1.08996 * 109.59091 * 174.89378 * 4 2 1
35 35 H 1.09003 * 109.58907 * 54.46973 * 4 2 1
36 36 H 1.08001 * 120.19746 * 359.97438 * 9 8 6
37 37 H 1.07995 * 120.29397 * 179.97438 * 10 9 8
38 38 H 1.07994 * 126.27267 * 179.97438 * 14 13 12
39 39 H 1.07999 * 119.80465 * 359.94279 * 16 15 14
40 40 H 1.08993 * 109.59390 * 173.14371 * 17 5 4
41 41 H 1.09003 * 109.58500 * 293.56921 * 17 5 4
42 42 H 1.08999 * 109.56978 * 185.56029 * 18 17 5
43 43 H 1.08998 * 109.38454 * 65.51938 * 18 17 5
44 44 H 1.09004 * 109.46958 * 305.00023 * 21 19 2
45 45 H 1.09000 * 109.47077 * 64.99970 * 21 19 2
46 46 H 0.96997 * 120.00116 * 359.97438 * 22 21 19
47 47 H 0.97000 * 119.99466 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8937 1.0275 0.0000
4 6 2.0413 -0.7234 -1.2498
5 7 1.6516 -2.1377 -1.1703
6 6 0.9740 -2.7211 -2.1787
7 8 0.7394 -2.0963 -3.1950
8 6 0.5219 -4.1204 -2.0519
9 6 1.4368 -5.1272 -1.6509
10 6 1.0130 -6.4106 -1.5363
11 6 -0.3331 -6.7231 -1.8189
12 7 -1.0250 -7.8493 -1.7988
13 7 -2.2418 -7.6135 -2.1436
14 6 -2.4029 -6.3421 -2.4015
15 7 -1.2013 -5.7301 -2.2061
16 6 -0.7777 -4.4440 -2.3154
17 6 2.0091 -2.9025 0.0322
18 6 1.5031 -2.1561 1.2653
19 6 2.0408 -0.7234 1.2480
20 1 3.1306 -0.7447 1.2350
21 6 1.5608 0.0163 2.4984
22 7 2.1469 -0.6050 3.6886
23 6 1.8580 -0.1097 4.9322
24 1 1.1977 0.7387 5.0354
25 6 2.4130 -0.6987 6.0600
26 7 3.2173 -1.7329 5.9340
27 14 2.0183 -0.0234 7.7563
28 1 0.5545 -0.1041 7.9930
29 1 2.7304 -0.8231 8.7854
30 1 2.4558 1.3932 7.8393
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3633 0.5149 0.8894
33 1 -0.3634 0.5129 -0.8906
34 1 3.1274 -0.6458 -1.2983
35 1 1.6007 -0.2724 -2.1390
36 1 2.4648 -4.8735 -1.4381
37 1 1.7003 -7.1861 -1.2322
38 1 -3.3200 -5.8646 -2.7131
39 1 -1.4723 -3.6737 -2.6164
40 1 1.5474 -3.8888 -0.0112
41 1 3.0926 -3.0062 0.0905
42 1 1.8482 -2.6634 2.1662
43 1 0.4133 -2.1358 1.2540
44 1 1.8697 1.0602 2.4440
45 1 0.4738 -0.0383 2.5580
46 1 2.7391 -1.3676 3.5959
47 1 3.6048 -2.1447 6.7222
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001185281221.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:58:26
Heat of formation + Delta-G solvation = 74.493608 kcal
Electronic energy + Delta-G solvation = -30103.240500 eV
Core-core repulsion = 26094.539713 eV
Total energy + Delta-G solvation = -4008.700787 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-44.67916 -41.76768 -39.69222 -38.66608 -36.59798 -35.41991 -34.68590 -33.33484
-32.38593 -31.98169 -30.59243 -28.50081 -28.10115 -25.99733 -25.33907 -24.90974
-24.03134 -23.61559 -22.93832 -21.48023 -19.85287 -19.59732 -18.90362 -18.55771
-17.85566 -17.63148 -17.31471 -16.79626 -16.46021 -16.11738 -15.97709 -15.76808
-15.49139 -15.31512 -15.27363 -14.80612 -14.46683 -14.27391 -13.91881 -13.76437
-13.60961 -13.51482 -13.17886 -12.97270 -12.83041 -12.77955 -12.66114 -12.56719
-12.26145 -12.18503 -12.00517 -11.89483 -11.74621 -11.54948 -11.44830 -11.21720
-11.08042 -10.88188 -10.64926 -9.70590 -9.29337 -8.94469 -7.93589 -5.20386
-0.61067 -0.18942 1.02334 1.36584 1.48211 1.49717 1.55922 1.66557
1.88466 2.21133 2.57176 2.93853 3.14425 3.40175 3.43095 3.49530
3.70653 3.74863 3.78136 3.82155 3.86260 4.05371 4.13733 4.26059
4.35582 4.42857 4.48654 4.54039 4.68524 4.72616 4.75119 4.80539
4.83571 4.85278 4.87800 4.89637 5.00568 5.11205 5.16861 5.20100
5.21053 5.27096 5.33980 5.49272 5.54444 5.63614 5.68063 6.25019
6.29889 6.92632 7.34590 7.36869 8.14465 8.37719 9.29396
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.012150 B = 0.002740 C = 0.002415
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2303.968053 B =10218.321424 C =11590.091455
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.091 4.091
3 H 0.093 0.907
4 C 0.121 3.879
5 N -0.587 5.587
6 C 0.578 3.422
7 O -0.563 6.563
8 C -0.151 4.151
9 C -0.056 4.056
10 C -0.086 4.086
11 C 0.191 3.809
12 N -0.333 5.333
13 N -0.295 5.295
14 C 0.142 3.858
15 N -0.400 5.400
16 C 0.132 3.868
17 C 0.104 3.896
18 C -0.123 4.123
19 C -0.079 4.079
20 H 0.072 0.928
21 C 0.158 3.842
22 N -0.742 5.742
23 C -0.245 4.245
24 H 0.070 0.930
25 C -0.071 4.071
26 N -0.965 5.965
27 Si 0.967 3.033
28 H -0.281 1.281
29 H -0.295 1.295
30 H -0.280 1.280
31 H 0.049 0.951
32 H 0.050 0.950
33 H 0.060 0.940
34 H 0.087 0.913
35 H 0.093 0.907
36 H 0.180 0.820
37 H 0.184 0.816
38 H 0.273 0.727
39 H 0.202 0.798
40 H 0.102 0.898
41 H 0.095 0.905
42 H 0.063 0.937
43 H 0.060 0.940
44 H 0.014 0.986
45 H 0.017 0.983
46 H 0.376 0.624
47 H 0.251 0.749
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.836 -2.934 -20.847 21.601
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.111 4.111
3 H 0.111 0.889
4 C -0.001 4.001
5 N -0.318 5.318
6 C 0.365 3.635
7 O -0.442 6.442
8 C -0.158 4.158
9 C -0.080 4.080
10 C -0.107 4.107
11 C -0.060 4.060
12 N -0.177 5.177
13 N -0.131 5.131
14 C -0.141 4.141
15 N -0.080 5.080
16 C 0.007 3.993
17 C -0.018 4.018
18 C -0.161 4.161
19 C -0.098 4.098
20 H 0.090 0.910
21 C 0.031 3.969
22 N -0.385 5.385
23 C -0.377 4.377
24 H 0.088 0.912
25 C -0.264 4.264
26 N -0.616 5.616
27 Si 0.796 3.204
28 H -0.207 1.207
29 H -0.222 1.222
30 H -0.206 1.206
31 H 0.068 0.932
32 H 0.069 0.931
33 H 0.079 0.921
34 H 0.105 0.895
35 H 0.111 0.889
36 H 0.198 0.802
37 H 0.201 0.799
38 H 0.289 0.711
39 H 0.219 0.781
40 H 0.120 0.880
41 H 0.113 0.887
42 H 0.082 0.918
43 H 0.079 0.921
44 H 0.032 0.968
45 H 0.035 0.965
46 H 0.209 0.791
47 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges -5.540 -4.113 -21.101 22.200
hybrid contribution 0.181 1.295 1.260 1.816
sum -5.359 -2.818 -19.841 20.744
Atomic orbital electron populations
1.21828 0.95003 1.01535 1.01568 1.21423 0.96471 0.99962 0.93197
0.88911 1.21770 1.00758 0.79150 0.98438 1.48004 1.54317 1.12043
1.17441 1.17759 0.77625 0.85233 0.82900 1.90824 1.58231 1.65352
1.29828 1.19459 0.94003 0.95204 1.07089 1.21509 1.01421 0.90338
0.94757 1.20483 0.89866 0.98578 1.01749 1.22980 0.95275 0.85345
1.02380 1.74850 0.98974 1.21017 1.22899 1.74096 1.10622 1.14276
1.14069 1.27516 0.90844 0.89671 1.06056 1.43964 1.11119 1.08588
1.44334 1.21851 0.96771 0.84165 0.96477 1.22096 1.02026 0.95253
0.82443 1.21778 1.00939 0.95657 0.97720 1.21197 1.00205 0.94884
0.93464 0.90999 1.20857 0.95365 0.94720 0.85926 1.42546 1.56931
1.37484 1.01514 1.19545 1.22287 1.10502 0.85348 0.91204 1.25452
1.00666 0.99074 1.01179 1.69773 1.37015 1.25653 1.29157 0.85317
0.77485 0.77512 0.80089 1.20697 1.22151 1.20577 0.93166 0.93140
0.92052 0.89456 0.88904 0.80229 0.79902 0.71122 0.78141 0.87990
0.88684 0.91833 0.92096 0.96813 0.96482 0.79100 0.94027
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.92 8.38 71.98 0.60 -2.32 16
2 C -0.09 -1.81 2.72 -10.72 -0.03 -1.84 16
3 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16
4 C 0.12 2.05 5.82 86.36 0.50 2.55 16
5 N -0.59 -9.84 2.42 -823.44 -1.99 -11.83 16
6 C 0.58 10.49 7.21 86.71 0.63 11.12 16
7 O -0.56 -13.63 16.46 -3.98 -0.07 -13.69 16
8 C -0.15 -2.24 4.95 -20.33 -0.10 -2.34 16
9 C -0.06 -0.67 7.36 22.55 0.17 -0.51 16
10 C -0.09 -1.25 10.09 22.36 0.23 -1.02 16
11 C 0.19 4.02 7.92 134.12 1.06 5.08 16
12 N -0.33 -9.04 12.29 -55.22 -0.68 -9.71 16
13 N -0.29 -7.36 12.18 -59.42 -0.72 -8.08 16
14 C 0.14 2.30 12.97 179.81 2.33 4.64 16
15 N -0.40 -6.81 2.94 -355.22 -1.04 -7.86 16
16 C 0.13 1.82 10.63 83.66 0.89 2.71 16
17 C 0.10 1.68 5.33 86.22 0.46 2.14 16
18 C -0.12 -2.96 4.89 30.53 0.15 -2.81 16
19 C -0.08 -2.03 1.96 -10.77 -0.02 -2.05 16
20 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16
21 C 0.16 5.68 5.19 86.38 0.45 6.13 16
22 N -0.74 -35.20 5.32 -343.44 -1.83 -37.02 16
23 C -0.24 -13.22 9.99 84.03 0.84 -12.38 16
24 H 0.07 3.67 7.83 -2.91 -0.02 3.64 16
25 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16
26 N -0.97 -56.84 13.06 21.65 0.28 -56.55 16
27 Si 0.97 45.05 29.55 68.60 2.03 47.08 16
28 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16
29 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16
30 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16
31 H 0.05 1.06 5.97 -2.39 -0.01 1.05 16
32 H 0.05 1.17 6.59 -2.39 -0.02 1.15 16
33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16
34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16
35 H 0.09 1.67 7.02 -2.39 -0.02 1.66 16
36 H 0.18 1.25 7.10 -2.91 -0.02 1.23 16
37 H 0.18 1.85 8.06 -2.91 -0.02 1.83 16
38 H 0.27 1.38 8.06 -2.91 -0.02 1.36 16
39 H 0.20 1.77 8.06 -2.91 -0.02 1.75 16
40 H 0.10 1.39 4.56 -2.39 -0.01 1.38 16
41 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16
42 H 0.06 1.91 7.15 -2.39 -0.02 1.89 16
43 H 0.06 1.54 6.33 -2.39 -0.02 1.53 16
44 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16
45 H 0.02 0.64 6.74 -2.39 -0.02 0.62 16
46 H 0.38 18.67 6.84 -92.71 -0.63 18.04 16
47 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16
Total: -1.00 -75.58 373.93 4.98 -70.60
By element:
Atomic # 1 Polarization: 21.08 SS G_CDS: 0.38 Total: 21.46 kcal
Atomic # 6 Polarization: -3.01 SS G_CDS: 8.62 Total: 5.61 kcal
Atomic # 7 Polarization: -125.08 SS G_CDS: -5.98 Total: -131.06 kcal
Atomic # 8 Polarization: -13.63 SS G_CDS: -0.07 Total: -13.69 kcal
Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal
Total: -75.58 4.98 -70.60 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001185281221.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 145.096 kcal
(2) G-P(sol) polarization free energy of solvation -75.581 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.515 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.979 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.603 kcal
(6) G-S(sol) free energy of system = (1) + (5) 74.494 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds