Wall clock time and date at job start Sat Apr 11 2020 07:00:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 H 1.08996 * 109.47045 * 2 1
4 4 N 1.46499 * 109.47489 * 120.00628 * 2 1 3
5 5 C 1.36939 * 119.99658 * 287.22855 * 4 2 1
6 6 H 1.07996 * 120.00099 * 359.97438 * 5 4 2
7 7 C 1.38813 * 119.99454 * 180.02562 * 5 4 2
8 8 N 1.31622 * 119.99881 * 179.97438 * 7 5 4
9 9 Si 1.86804 * 120.00355 * 359.97438 * 7 5 4
10 10 H 1.48498 * 109.46871 * 89.99925 * 9 7 5
11 11 H 1.48504 * 109.47063 * 210.00527 * 9 7 5
12 12 H 1.48504 * 109.46885 * 330.00044 * 9 7 5
13 13 C 1.53003 * 109.46671 * 240.00446 * 2 1 3
14 14 H 1.08993 * 109.70549 * 285.89698 * 13 2 1
15 15 C 1.53199 * 109.58575 * 46.25388 * 13 2 1
16 16 C 1.53042 * 109.31206 * 174.41916 * 15 13 2
17 17 C 1.53039 * 109.53865 * 298.63548 * 16 15 13
18 18 C 1.53199 * 109.31543 * 61.36414 * 17 16 15
19 19 N 1.46923 * 108.77144 * 305.36718 * 18 17 16
20 20 C 1.34785 * 120.63057 * 233.58591 * 19 18 17
21 21 O 1.21560 * 119.99989 * 185.51990 * 20 19 18
22 22 C 1.47719 * 119.99364 * 5.51152 * 20 19 18
23 23 C 1.40248 * 119.88153 * 34.49131 * 22 20 19
24 24 C 1.36161 * 120.55678 * 179.72534 * 23 22 20
25 25 C 1.39919 * 119.97645 * 0.52452 * 24 23 22
26 26 N 1.34746 * 134.59181 * 179.75825 * 25 24 23
27 27 N 1.28638 * 109.29185 * 179.97438 * 26 25 24
28 28 N 1.28814 * 111.79566 * 359.97438 * 27 26 25
29 29 H 0.97000 * 125.94562 * 180.02562 * 28 27 26
30 30 C 1.37367 * 108.11356 * 0.02562 * 28 27 26
31 31 C 1.38617 * 134.89699 * 180.02562 * 30 28 27
32 32 H 1.08996 * 109.47045 * 180.02562 * 1 2 3
33 33 H 1.09001 * 109.46349 * 299.99452 * 1 2 3
34 34 H 1.08996 * 109.47440 * 59.99387 * 1 2 3
35 35 H 0.97002 * 120.00187 * 107.21850 * 4 2 1
36 36 H 0.96998 * 119.99909 * 179.97438 * 8 7 5
37 37 H 1.08999 * 109.49600 * 294.36964 * 15 13 2
38 38 H 1.09000 * 109.49438 * 54.46909 * 15 13 2
39 39 H 1.08998 * 109.45927 * 58.65339 * 16 15 13
40 40 H 1.08998 * 109.45836 * 178.61040 * 16 15 13
41 41 H 1.08997 * 109.49755 * 301.41250 * 17 16 15
42 42 H 1.08998 * 109.50011 * 181.31590 * 17 16 15
43 43 H 1.08993 * 109.58851 * 185.57759 * 18 17 16
44 44 H 1.09000 * 109.69915 * 65.22024 * 18 17 16
45 45 H 1.07996 * 119.72521 * 359.97381 * 23 22 20
46 46 H 1.07999 * 120.01709 * 180.25415 * 24 23 22
47 47 H 1.08003 * 120.23808 * 359.97438 * 31 30 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0185 -0.6907 1.1961
5 6 1.9156 -0.0911 2.4229
6 1 1.4748 0.8910 2.5087
7 6 2.3789 -0.7454 3.5561
8 7 2.2804 -0.1690 4.7353
9 14 3.1420 -2.4440 3.4076
10 1 4.6049 -2.3120 3.1890
11 1 2.8951 -3.2085 4.6566
12 1 2.5326 -3.1618 2.2593
13 6 2.0400 -0.7212 -1.2494
14 1 1.8975 -1.7959 -1.1372
15 6 1.2701 -0.2265 -2.4780
16 6 1.8770 -0.8464 -3.7389
17 6 3.3365 -0.4064 -3.8740
18 6 4.1298 -0.9031 -2.6611
19 7 3.4679 -0.4306 -1.4375
20 6 4.1576 0.2559 -0.5049
21 8 3.6262 0.5542 0.5469
22 6 5.5592 0.6456 -0.7611
23 6 5.9636 0.9856 -2.0603
24 6 7.2508 1.3522 -2.3110
25 6 8.1848 1.3812 -1.2697
26 7 9.4950 1.6838 -1.1822
27 7 9.8825 1.5464 0.0367
28 7 8.9204 1.1666 0.8045
29 1 8.9843 1.0013 1.7581
30 6 7.7881 1.0363 0.0377
31 6 6.4746 0.6698 0.2868
32 1 -0.3633 -1.0276 0.0005
33 1 -0.3632 0.5138 0.8901
34 1 -0.3634 0.5139 -0.8899
35 1 2.4146 -1.5728 1.1190
36 1 2.6038 -0.6264 5.5272
37 1 0.2241 -0.5213 -2.3949
38 1 1.3389 0.8597 -2.5373
39 1 1.8303 -1.9330 -3.6678
40 1 1.3155 -0.5154 -4.6125
41 1 3.3858 0.6815 -3.9202
42 1 3.7612 -0.8293 -4.7844
43 1 5.1453 -0.5095 -2.7026
44 1 4.1599 -1.9927 -2.6629
45 1 5.2472 0.9603 -2.8680
46 1 7.5517 1.6162 -3.3140
47 1 6.1642 0.4047 1.2867
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001266011395.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:00:43
Heat of formation + Delta-G solvation = 150.069594 kcal
Electronic energy + Delta-G solvation = -31500.808551 eV
Core-core repulsion = 27495.384985 eV
Total energy + Delta-G solvation = -4005.423566 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 1.23 seconds
Orbital eigenvalues (eV)
-43.32475 -40.65734 -38.08015 -36.99334 -35.36429 -33.95133 -32.91339 -32.30966
-30.87169 -30.48226 -30.19716 -28.21024 -25.85782 -24.53309 -24.22664 -23.35310
-22.64168 -22.40247 -20.95066 -20.05010 -19.63643 -18.49145 -18.29392 -17.15429
-16.41983 -16.36211 -15.85144 -15.46332 -14.85033 -14.79915 -14.36599 -14.19985
-14.12883 -13.99061 -13.78280 -13.21696 -12.90043 -12.83627 -12.65724 -12.41536
-12.30490 -12.23230 -12.10283 -11.80143 -11.51257 -11.47521 -11.34381 -11.02107
-10.95170 -10.89433 -10.79490 -10.71714 -10.48185 -10.18919 -9.88781 -9.40663
-9.05741 -8.78426 -8.64996 -8.49954 -8.20435 -6.89245 -5.57094 -2.83500
0.29474 1.00356 2.07416 2.34863 3.03561 3.15658 3.41746 3.44979
3.50466 3.68019 3.85760 4.42255 4.48359 4.67165 4.73698 4.76104
4.78768 4.83861 4.91895 4.99622 5.02498 5.18067 5.28835 5.36247
5.48528 5.61010 5.64058 5.65819 5.73635 5.75990 5.82359 5.89897
5.94997 5.97270 5.97332 6.02060 6.13260 6.23127 6.31619 6.33783
6.39886 6.52737 6.63043 6.76230 6.95788 7.22557 7.71711 8.09556
8.18355 8.59813 8.68638 9.40413 10.13358 10.34123 11.63201
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.008873 B = 0.005190 C = 0.003548
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3154.924622 B = 5393.282167 C = 7888.918820
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.185 3.815
3 H 0.067 0.933
4 N -0.718 5.718
5 C -0.186 4.186
6 H 0.086 0.914
7 C -0.009 4.009
8 N -0.946 5.946
9 Si 0.879 3.121
10 H -0.293 1.293
11 H -0.296 1.296
12 H -0.283 1.283
13 C 0.145 3.855
14 H 0.066 0.934
15 C -0.128 4.128
16 C -0.119 4.119
17 C -0.136 4.136
18 C 0.081 3.919
19 N -0.609 5.609
20 C 0.513 3.487
21 O -0.423 6.423
22 C -0.083 4.083
23 C -0.104 4.104
24 C -0.060 4.060
25 C 0.018 3.982
26 N -0.255 5.255
27 N -0.016 5.016
28 N -0.412 5.412
29 H 0.455 0.545
30 C 0.025 3.975
31 C -0.046 4.046
32 H 0.044 0.956
33 H 0.060 0.940
34 H 0.041 0.959
35 H 0.354 0.646
36 H 0.253 0.747
37 H 0.078 0.922
38 H 0.068 0.932
39 H 0.062 0.938
40 H 0.062 0.938
41 H 0.067 0.933
42 H 0.072 0.928
43 H 0.105 0.895
44 H 0.063 0.937
45 H 0.152 0.848
46 H 0.142 0.858
47 H 0.147 0.853
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.353 -0.231 -19.790 20.786
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C 0.076 3.924
3 H 0.085 0.915
4 N -0.360 5.360
5 C -0.317 4.317
6 H 0.104 0.896
7 C -0.202 4.202
8 N -0.597 5.597
9 Si 0.712 3.288
10 H -0.220 1.220
11 H -0.223 1.223
12 H -0.209 1.209
13 C 0.042 3.958
14 H 0.084 0.916
15 C -0.167 4.167
16 C -0.156 4.156
17 C -0.174 4.174
18 C -0.042 4.042
19 N -0.346 5.346
20 C 0.298 3.702
21 O -0.291 6.291
22 C -0.091 4.091
23 C -0.125 4.125
24 C -0.082 4.082
25 C -0.108 4.108
26 N -0.131 5.131
27 N 0.002 4.998
28 N -0.141 5.141
29 H 0.302 0.698
30 C -0.095 4.095
31 C -0.069 4.069
32 H 0.063 0.937
33 H 0.079 0.921
34 H 0.060 0.940
35 H 0.186 0.814
36 H 0.063 0.937
37 H 0.097 0.903
38 H 0.087 0.913
39 H 0.081 0.919
40 H 0.081 0.919
41 H 0.086 0.914
42 H 0.090 0.910
43 H 0.122 0.878
44 H 0.081 0.919
45 H 0.169 0.831
46 H 0.160 0.840
47 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges 7.505 0.498 -19.133 20.558
hybrid contribution -0.285 -1.808 0.758 1.981
sum 7.220 -1.309 -18.374 19.785
Atomic orbital electron populations
1.22534 0.98936 1.00807 1.00607 1.20403 0.90852 0.96997 0.84129
0.91501 1.42653 1.72351 1.17692 1.03316 1.18916 1.29985 1.00598
0.82186 0.89613 1.24518 1.02529 0.97666 0.95456 1.69688 1.54494
1.38006 0.97538 0.86609 0.79304 0.86695 0.76189 1.22024 1.22337
1.20945 1.21578 0.78876 0.99500 0.95890 0.91607 1.22033 0.99747
1.01183 0.93729 1.21518 0.95452 1.00686 0.97990 1.21938 0.96276
1.01571 0.97645 1.22346 0.98084 0.99624 0.84159 1.47796 1.09936
1.56782 1.20071 1.18263 0.85393 0.81868 0.84666 1.91397 1.66926
1.48855 1.21936 1.20066 0.94654 1.01277 0.93053 1.21192 0.96088
0.98883 0.96309 1.19894 0.90999 0.99539 0.97785 1.20042 0.92319
1.04785 0.93606 1.75319 1.09827 1.19063 1.08929 1.77939 1.14123
1.10809 0.96949 1.44891 1.05779 1.50748 1.12663 0.69786 1.19682
0.90923 1.06965 0.91930 1.20179 0.87864 0.98062 1.00776 0.93709
0.92116 0.93992 0.81366 0.93664 0.90308 0.91327 0.91949 0.91878
0.91387 0.90970 0.87759 0.91889 0.83067 0.84049 0.83484
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.89 8.56 37.16 0.32 -2.57 16
2 C 0.19 3.48 1.85 -67.93 -0.13 3.35 16
3 H 0.07 1.41 6.27 -51.93 -0.33 1.08 16
4 N -0.72 -16.83 3.08 -53.42 -0.16 -17.00 16
5 C -0.19 -5.26 8.83 -15.06 -0.13 -5.39 16
6 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16
7 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16
8 N -0.95 -30.36 13.97 55.49 0.78 -29.59 16
9 Si 0.88 22.81 27.74 -169.99 -4.71 18.09 16
10 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16
11 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16
12 H -0.28 -6.95 6.52 56.52 0.37 -6.58 16
13 C 0.14 2.09 2.63 -67.59 -0.18 1.92 16
14 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16
15 C -0.13 -1.40 4.35 -26.61 -0.12 -1.51 16
16 C -0.12 -1.00 5.88 -26.69 -0.16 -1.16 16
17 C -0.14 -1.03 5.75 -26.61 -0.15 -1.18 16
18 C 0.08 0.77 5.53 -3.71 -0.02 0.75 16
19 N -0.61 -8.30 2.97 -166.37 -0.49 -8.80 16
20 C 0.51 8.47 7.12 -12.38 -0.09 8.38 16
21 O -0.42 -9.09 9.94 5.31 0.05 -9.04 16
22 C -0.08 -1.15 5.43 -104.92 -0.57 -1.72 16
23 C -0.10 -1.08 7.30 -39.57 -0.29 -1.37 16
24 C -0.06 -0.62 10.03 -39.70 -0.40 -1.02 16
25 C 0.02 0.24 7.36 -84.95 -0.63 -0.39 16
26 N -0.26 -3.61 12.42 32.09 0.40 -3.21 16
27 N -0.02 -0.21 13.28 60.35 0.80 0.59 16
28 N -0.41 -4.75 7.08 32.31 0.23 -4.53 16
29 H 0.45 3.69 8.96 -190.23 -1.71 1.98 16
30 C 0.03 0.33 7.40 -84.23 -0.62 -0.29 16
31 C -0.05 -0.66 9.62 -39.10 -0.38 -1.04 16
32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16
33 H 0.06 1.19 7.97 -51.93 -0.41 0.78 16
34 H 0.04 0.58 6.45 -51.93 -0.33 0.25 16
35 H 0.35 8.41 5.53 -40.82 -0.23 8.18 16
36 H 0.25 7.82 8.31 -40.82 -0.34 7.48 16
37 H 0.08 0.82 6.71 -51.93 -0.35 0.47 16
38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16
40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16
41 H 0.07 0.51 7.63 -51.93 -0.40 0.11 16
42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
43 H 0.10 0.90 3.51 -51.94 -0.18 0.72 16
44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
45 H 0.15 1.21 5.04 -52.49 -0.26 0.95 16
46 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16
47 H 0.15 2.31 7.98 -52.48 -0.42 1.89 16
LS Contribution 361.77 15.07 5.45 5.45
Total: -1.00 -35.58 361.77 -8.88 -44.46
By element:
Atomic # 1 Polarization: 14.74 SS G_CDS: -7.59 Total: 7.16 kcal
Atomic # 6 Polarization: 0.05 SS G_CDS: -3.63 Total: -3.58 kcal
Atomic # 7 Polarization: -64.08 SS G_CDS: 1.55 Total: -62.53 kcal
Atomic # 8 Polarization: -9.09 SS G_CDS: 0.05 Total: -9.04 kcal
Atomic # 14 Polarization: 22.81 SS G_CDS: -4.71 Total: 18.09 kcal
Total LS contribution 5.45 Total: 5.45 kcal
Total: -35.58 -8.88 -44.46 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001266011395.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 194.528 kcal
(2) G-P(sol) polarization free energy of solvation -35.577 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.951 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.458 kcal
(6) G-S(sol) free energy of system = (1) + (5) 150.070 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.23 seconds