Wall clock time and date at job start Sat Apr 11 2020 07:00:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 H 1.08996 * 109.47045 * 2 1
4 4 N 1.46499 * 109.47489 * 120.00628 * 2 1 3
5 5 C 1.36939 * 119.99658 * 287.22855 * 4 2 1
6 6 H 1.07996 * 120.00099 * 359.97438 * 5 4 2
7 7 C 1.38813 * 119.99454 * 180.02562 * 5 4 2
8 8 N 1.31622 * 119.99881 * 179.97438 * 7 5 4
9 9 Si 1.86804 * 120.00355 * 359.97438 * 7 5 4
10 10 H 1.48498 * 109.46871 * 89.99925 * 9 7 5
11 11 H 1.48504 * 109.47063 * 210.00527 * 9 7 5
12 12 H 1.48504 * 109.46885 * 330.00044 * 9 7 5
13 13 C 1.53003 * 109.46671 * 240.00446 * 2 1 3
14 14 H 1.08993 * 109.70549 * 285.89698 * 13 2 1
15 15 C 1.53199 * 109.58575 * 46.25388 * 13 2 1
16 16 C 1.53042 * 109.31206 * 174.41916 * 15 13 2
17 17 C 1.53039 * 109.53865 * 298.63548 * 16 15 13
18 18 C 1.53199 * 109.31543 * 61.36414 * 17 16 15
19 19 N 1.46923 * 108.77144 * 305.36718 * 18 17 16
20 20 C 1.34785 * 120.63057 * 233.58591 * 19 18 17
21 21 O 1.21560 * 119.99989 * 185.51990 * 20 19 18
22 22 C 1.47719 * 119.99364 * 5.51152 * 20 19 18
23 23 C 1.40248 * 119.88153 * 34.49131 * 22 20 19
24 24 C 1.36161 * 120.55678 * 179.72534 * 23 22 20
25 25 C 1.39919 * 119.97645 * 0.52452 * 24 23 22
26 26 N 1.34746 * 134.59181 * 179.75825 * 25 24 23
27 27 N 1.28638 * 109.29185 * 179.97438 * 26 25 24
28 28 N 1.28814 * 111.79566 * 359.97438 * 27 26 25
29 29 H 0.97000 * 125.94562 * 180.02562 * 28 27 26
30 30 C 1.37367 * 108.11356 * 0.02562 * 28 27 26
31 31 C 1.38617 * 134.89699 * 180.02562 * 30 28 27
32 32 H 1.08996 * 109.47045 * 180.02562 * 1 2 3
33 33 H 1.09001 * 109.46349 * 299.99452 * 1 2 3
34 34 H 1.08996 * 109.47440 * 59.99387 * 1 2 3
35 35 H 0.97002 * 120.00187 * 107.21850 * 4 2 1
36 36 H 0.96998 * 119.99909 * 179.97438 * 8 7 5
37 37 H 1.08999 * 109.49600 * 294.36964 * 15 13 2
38 38 H 1.09000 * 109.49438 * 54.46909 * 15 13 2
39 39 H 1.08998 * 109.45927 * 58.65339 * 16 15 13
40 40 H 1.08998 * 109.45836 * 178.61040 * 16 15 13
41 41 H 1.08997 * 109.49755 * 301.41250 * 17 16 15
42 42 H 1.08998 * 109.50011 * 181.31590 * 17 16 15
43 43 H 1.08993 * 109.58851 * 185.57759 * 18 17 16
44 44 H 1.09000 * 109.69915 * 65.22024 * 18 17 16
45 45 H 1.07996 * 119.72521 * 359.97381 * 23 22 20
46 46 H 1.07999 * 120.01709 * 180.25415 * 24 23 22
47 47 H 1.08003 * 120.23808 * 359.97438 * 31 30 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0185 -0.6907 1.1961
5 6 1.9156 -0.0911 2.4229
6 1 1.4748 0.8910 2.5087
7 6 2.3789 -0.7454 3.5561
8 7 2.2804 -0.1690 4.7353
9 14 3.1420 -2.4440 3.4076
10 1 4.6049 -2.3120 3.1890
11 1 2.8951 -3.2085 4.6566
12 1 2.5326 -3.1618 2.2593
13 6 2.0400 -0.7212 -1.2494
14 1 1.8975 -1.7959 -1.1372
15 6 1.2701 -0.2265 -2.4780
16 6 1.8770 -0.8464 -3.7389
17 6 3.3365 -0.4064 -3.8740
18 6 4.1298 -0.9031 -2.6611
19 7 3.4679 -0.4306 -1.4375
20 6 4.1576 0.2559 -0.5049
21 8 3.6262 0.5542 0.5469
22 6 5.5592 0.6456 -0.7611
23 6 5.9636 0.9856 -2.0603
24 6 7.2508 1.3522 -2.3110
25 6 8.1848 1.3812 -1.2697
26 7 9.4950 1.6838 -1.1822
27 7 9.8825 1.5464 0.0367
28 7 8.9204 1.1666 0.8045
29 1 8.9843 1.0013 1.7581
30 6 7.7881 1.0363 0.0377
31 6 6.4746 0.6698 0.2868
32 1 -0.3633 -1.0276 0.0005
33 1 -0.3632 0.5138 0.8901
34 1 -0.3634 0.5139 -0.8899
35 1 2.4146 -1.5728 1.1190
36 1 2.6038 -0.6264 5.5272
37 1 0.2241 -0.5213 -2.3949
38 1 1.3389 0.8597 -2.5373
39 1 1.8303 -1.9330 -3.6678
40 1 1.3155 -0.5154 -4.6125
41 1 3.3858 0.6815 -3.9202
42 1 3.7612 -0.8293 -4.7844
43 1 5.1453 -0.5095 -2.7026
44 1 4.1599 -1.9927 -2.6629
45 1 5.2472 0.9603 -2.8680
46 1 7.5517 1.6162 -3.3140
47 1 6.1642 0.4047 1.2867
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001266011395.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:00:41
Heat of formation + Delta-G solvation = 124.235284 kcal
Electronic energy + Delta-G solvation = -31501.928811 eV
Core-core repulsion = 27495.384985 eV
Total energy + Delta-G solvation = -4006.543826 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-44.33125 -41.81318 -39.13544 -38.12853 -36.90559 -34.96258 -34.32153 -33.71499
-32.17846 -31.59563 -31.49295 -29.57704 -27.01287 -25.85368 -25.42535 -24.33835
-23.93180 -23.55153 -21.92614 -21.49886 -20.67630 -19.77720 -19.48436 -18.75832
-17.44197 -17.37523 -17.01417 -16.80134 -16.28058 -15.97602 -15.75135 -15.39815
-15.15444 -15.07499 -14.78734 -14.68024 -14.28052 -14.08461 -13.93940 -13.74258
-13.64254 -13.31495 -13.18348 -13.07439 -12.91238 -12.77527 -12.58085 -12.37089
-12.28000 -12.03399 -11.94547 -11.81015 -11.67651 -11.62086 -11.38178 -11.15652
-10.86613 -10.10225 -9.94162 -9.58837 -9.38929 -8.88534 -7.86886 -5.09217
-0.73481 0.05500 1.01288 1.30020 1.33927 1.40657 1.41884 1.92901
2.07918 2.55318 2.59684 2.89067 3.42263 3.45200 3.49672 3.68752
3.78607 3.86446 3.93659 4.01809 4.04879 4.15377 4.25129 4.32997
4.38340 4.40118 4.66357 4.74771 4.75438 4.81646 4.84114 4.86604
4.97087 5.02151 5.07702 5.12260 5.15641 5.23562 5.26510 5.34924
5.43962 5.48325 5.51511 5.60781 5.74431 5.89100 5.91818 6.35382
6.58105 7.07617 7.24176 7.45934 8.03144 8.21240 9.37775
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.008873 B = 0.005190 C = 0.003548
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3154.924622 B = 5393.282167 C = 7888.918820
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.181 3.819
3 H 0.040 0.960
4 N -0.718 5.718
5 C -0.152 4.152
6 H 0.043 0.957
7 C -0.084 4.084
8 N -1.002 6.002
9 Si 0.949 3.051
10 H -0.292 1.292
11 H -0.303 1.303
12 H -0.258 1.258
13 C 0.148 3.852
14 H 0.065 0.935
15 C -0.122 4.122
16 C -0.115 4.115
17 C -0.131 4.131
18 C 0.073 3.927
19 N -0.603 5.603
20 C 0.513 3.487
21 O -0.492 6.492
22 C -0.089 4.089
23 C -0.090 4.090
24 C -0.043 4.043
25 C 0.009 3.991
26 N -0.271 5.271
27 N -0.022 5.022
28 N -0.401 5.401
29 H 0.466 0.534
30 C 0.016 3.984
31 C -0.062 4.062
32 H 0.051 0.949
33 H 0.023 0.977
34 H 0.080 0.920
35 H 0.353 0.647
36 H 0.248 0.752
37 H 0.086 0.914
38 H 0.066 0.934
39 H 0.066 0.934
40 H 0.084 0.916
41 H 0.074 0.926
42 H 0.104 0.896
43 H 0.117 0.883
44 H 0.071 0.929
45 H 0.185 0.815
46 H 0.181 0.819
47 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.064 -1.523 -25.080 26.100
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.074 3.926
3 H 0.058 0.942
4 N -0.360 5.360
5 C -0.284 4.284
6 H 0.061 0.939
7 C -0.272 4.272
8 N -0.657 5.657
9 Si 0.779 3.221
10 H -0.220 1.220
11 H -0.231 1.231
12 H -0.183 1.183
13 C 0.045 3.955
14 H 0.083 0.917
15 C -0.160 4.160
16 C -0.153 4.153
17 C -0.169 4.169
18 C -0.048 4.048
19 N -0.338 5.338
20 C 0.299 3.701
21 O -0.365 6.365
22 C -0.096 4.096
23 C -0.110 4.110
24 C -0.065 4.065
25 C -0.116 4.116
26 N -0.147 5.147
27 N -0.004 5.004
28 N -0.132 5.132
29 H 0.316 0.684
30 C -0.105 4.105
31 C -0.085 4.085
32 H 0.070 0.930
33 H 0.042 0.958
34 H 0.099 0.901
35 H 0.186 0.814
36 H 0.056 0.944
37 H 0.104 0.896
38 H 0.084 0.916
39 H 0.084 0.916
40 H 0.103 0.897
41 H 0.092 0.908
42 H 0.122 0.878
43 H 0.135 0.865
44 H 0.089 0.911
45 H 0.202 0.798
46 H 0.198 0.802
47 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges 8.223 -0.818 -24.545 25.899
hybrid contribution -0.472 -1.284 2.271 2.652
sum 7.750 -2.103 -22.274 23.677
Atomic orbital electron populations
1.22413 0.97637 1.01224 1.00690 1.20515 0.91594 0.95930 0.84589
0.94212 1.42579 1.72671 1.17604 1.03113 1.18739 1.26927 0.98472
0.84283 0.93930 1.25212 1.04721 1.02141 0.95119 1.69889 1.57376
1.40084 0.98372 0.85463 0.78264 0.81900 0.76428 1.21971 1.23097
1.18337 1.21479 0.79901 0.98784 0.95329 0.91667 1.21999 0.99757
1.01162 0.93131 1.21522 0.96096 1.00751 0.96929 1.21956 0.95348
1.02113 0.97442 1.22703 0.98805 1.00277 0.83041 1.47929 1.09655
1.55420 1.20801 1.18723 0.86287 0.80873 0.84193 1.91372 1.68415
1.52141 1.24593 1.20002 0.93086 1.01918 0.94629 1.21397 0.96763
0.97667 0.95211 1.20337 0.90000 0.97378 0.98761 1.20495 0.92390
1.04607 0.94143 1.75298 1.10350 1.19826 1.09228 1.77891 1.14405
1.10944 0.97114 1.44945 1.05146 1.49840 1.13249 0.68386 1.19665
0.90692 1.07460 0.92662 1.19996 0.88869 0.99689 0.99992 0.93018
0.95766 0.90146 0.81428 0.94359 0.89556 0.91552 0.91566 0.89738
0.90776 0.87774 0.86531 0.91084 0.79817 0.80151 0.86215
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.47 8.56 71.98 0.62 -4.86 16
2 C 0.18 6.90 1.85 45.00 0.08 6.99 16
3 H 0.04 1.76 6.27 -2.39 -0.01 1.74 16
4 N -0.72 -34.69 3.08 -322.93 -0.99 -35.68 16
5 C -0.15 -9.10 8.83 84.03 0.74 -8.36 16
6 H 0.04 2.87 8.06 -2.91 -0.02 2.84 16
7 C -0.08 -5.23 5.50 84.86 0.47 -4.77 16
8 N -1.00 -68.21 13.97 21.65 0.30 -67.91 16
9 Si 0.95 49.10 27.74 68.60 1.90 51.00 16
10 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16
11 H -0.30 -15.93 7.11 99.48 0.71 -15.23 16
12 H -0.26 -12.10 6.52 99.48 0.65 -11.45 16
13 C 0.15 4.01 2.63 44.98 0.12 4.13 16
14 H 0.07 1.81 8.09 -2.39 -0.02 1.79 16
15 C -0.12 -2.22 4.35 30.68 0.13 -2.08 16
16 C -0.12 -1.33 5.88 30.62 0.18 -1.15 16
17 C -0.13 -1.21 5.75 30.67 0.18 -1.03 16
18 C 0.07 1.07 5.53 86.37 0.48 1.55 16
19 N -0.60 -15.18 2.97 -798.53 -2.37 -17.56 16
20 C 0.51 16.86 7.12 86.75 0.62 17.47 16
21 O -0.49 -22.20 9.94 -3.91 -0.04 -22.24 16
22 C -0.09 -2.38 5.43 -20.06 -0.11 -2.49 16
23 C -0.09 -1.55 7.30 22.27 0.16 -1.39 16
24 C -0.04 -0.72 10.03 22.19 0.22 -0.50 16
25 C 0.01 0.23 7.36 39.76 0.29 0.52 16
26 N -0.27 -7.21 12.42 -52.38 -0.65 -7.86 16
27 N -0.02 -0.55 13.28 37.02 0.49 -0.06 16
28 N -0.40 -9.18 7.08 -51.69 -0.37 -9.54 16
29 H 0.47 7.73 8.96 -219.82 -1.97 5.76 16
30 C 0.02 0.41 7.40 39.02 0.29 0.70 16
31 C -0.06 -1.84 9.62 22.58 0.22 -1.62 16
32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16
33 H 0.02 0.97 7.97 -2.39 -0.02 0.95 16
34 H 0.08 2.10 6.45 -2.39 -0.02 2.09 16
35 H 0.35 16.88 5.53 -92.71 -0.51 16.37 16
36 H 0.25 16.21 8.31 -92.71 -0.77 15.44 16
37 H 0.09 1.46 6.71 -2.39 -0.02 1.45 16
38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16
39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16
40 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16
41 H 0.07 0.66 7.63 -2.39 -0.02 0.64 16
42 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16
43 H 0.12 1.44 3.51 -2.39 -0.01 1.43 16
44 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
45 H 0.18 1.97 5.04 -2.91 -0.01 1.95 16
46 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16
47 H 0.12 4.13 7.98 -2.91 -0.02 4.11 16
Total: -1.00 -85.12 361.77 1.46 -83.66
By element:
Atomic # 1 Polarization: 24.58 SS G_CDS: -1.50 Total: 23.08 kcal
Atomic # 6 Polarization: -1.57 SS G_CDS: 4.69 Total: 3.12 kcal
Atomic # 7 Polarization: -135.02 SS G_CDS: -3.59 Total: -138.61 kcal
Atomic # 8 Polarization: -22.20 SS G_CDS: -0.04 Total: -22.24 kcal
Atomic # 14 Polarization: 49.10 SS G_CDS: 1.90 Total: 51.00 kcal
Total: -85.12 1.46 -83.66 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001266011395.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 207.894 kcal
(2) G-P(sol) polarization free energy of solvation -85.116 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.779 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.659 kcal
(6) G-S(sol) free energy of system = (1) + (5) 124.235 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds