Wall clock time and date at job start Sat Apr 11 2020 06:58:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08998 * 109.46863 * 2 1
4 4 N 1.46493 * 109.47318 * 119.99973 * 2 1 3
5 5 C 1.36934 * 120.00426 * 275.00188 * 4 2 1
6 6 H 1.08005 * 120.00009 * 359.97438 * 5 4 2
7 7 C 1.38813 * 119.99979 * 179.97438 * 5 4 2
8 8 N 1.31611 * 120.00560 * 0.02562 * 7 5 4
9 9 Si 1.86810 * 119.99894 * 179.97438 * 7 5 4
10 10 H 1.48500 * 109.46987 * 0.02562 * 9 7 5
11 11 H 1.48498 * 109.46992 * 119.99964 * 9 7 5
12 12 H 1.48498 * 109.47092 * 240.00282 * 9 7 5
13 13 C 1.50698 * 109.47194 * 240.00354 * 2 1 3
14 14 C 1.38234 * 119.99927 * 99.99758 * 13 2 1
15 15 C 1.38236 * 120.00173 * 180.02562 * 14 13 2
16 16 C 1.38242 * 119.99690 * 359.97438 * 15 14 13
17 17 C 1.50698 * 119.99895 * 179.97438 * 16 15 14
18 18 N 1.46506 * 109.46802 * 90.00381 * 17 16 15
19 19 C 1.34777 * 119.99507 * 180.02562 * 18 17 16
20 20 O 1.21282 * 120.00438 * 359.97438 * 19 18 17
21 21 C 1.50704 * 119.99537 * 179.97438 * 19 18 17
22 22 C 1.52999 * 109.46982 * 179.97438 * 21 19 18
23 23 N 1.46500 * 109.47084 * 179.97438 * 22 21 19
24 24 C 1.34429 * 126.81895 * 124.99739 * 23 22 21
25 25 N 1.30837 * 108.07952 * 180.02562 * 24 23 22
26 26 C 1.33246 * 109.82318 * 359.97438 * 25 24 23
27 27 N 1.30712 * 108.94935 * 0.27015 * 26 25 24
28 28 C 1.38235 * 119.99946 * 0.25980 * 16 15 14
29 29 C 1.38233 * 119.99842 * 280.02179 * 13 2 1
30 30 H 1.09005 * 109.47221 * 179.97438 * 1 2 3
31 31 H 1.09003 * 109.47112 * 299.99839 * 1 2 3
32 32 H 1.09003 * 109.47591 * 59.99668 * 1 2 3
33 33 H 0.97004 * 119.99706 * 95.00412 * 4 2 1
34 34 H 0.97002 * 120.00803 * 180.02562 * 8 7 5
35 35 H 1.08007 * 120.00221 * 359.97438 * 14 13 2
36 36 H 1.07998 * 120.00466 * 179.97438 * 15 14 13
37 37 H 1.08993 * 109.47220 * 330.00091 * 17 16 15
38 38 H 1.08996 * 109.46921 * 209.99907 * 17 16 15
39 39 H 0.96992 * 119.99953 * 359.97438 * 18 17 16
40 40 H 1.09002 * 109.47233 * 59.99445 * 21 19 18
41 41 H 1.08996 * 109.47047 * 299.99315 * 21 19 18
42 42 H 1.09002 * 109.47279 * 59.99854 * 22 21 19
43 43 H 1.08995 * 109.47424 * 300.00033 * 22 21 19
44 44 H 1.08000 * 125.96340 * 359.97438 * 24 23 22
45 45 H 1.08002 * 125.52127 * 179.97438 * 26 25 24
46 46 H 1.08002 * 119.99912 * 179.72810 * 28 16 15
47 47 H 1.07991 * 120.00117 * 0.02562 * 29 13 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 7 2.0183 -0.6906 1.1961
5 6 2.1491 -0.0075 2.3757
6 1 1.8926 1.0405 2.4242
7 6 2.6114 -0.6621 3.5092
8 7 2.9245 -1.9391 3.4501
9 14 2.7905 0.2699 5.1182
10 1 2.3765 1.6823 4.9209
11 1 1.9294 -0.3579 6.1524
12 1 4.2074 0.2261 5.5606
13 6 2.0323 -0.7103 -1.2305
14 6 2.4587 0.0196 -2.3242
15 6 2.9190 -0.6319 -3.4532
16 6 2.9534 -2.0135 -3.4881
17 6 3.4547 -2.7238 -4.7190
18 7 4.9001 -2.9350 -4.6064
19 6 5.5696 -3.5557 -5.5978
20 8 4.9756 -3.9399 -6.5829
21 6 7.0565 -3.7724 -5.4821
22 6 7.5654 -4.4937 -6.7318
23 7 9.0109 -4.7038 -6.6197
24 6 9.6650 -5.8741 -6.7191
25 7 10.9425 -5.6399 -6.5608
26 6 11.1417 -4.3379 -6.3597
27 7 9.9881 -3.7236 -6.3816
28 6 2.5225 -2.7434 -2.3962
29 6 2.0663 -2.0918 -1.2656
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 -0.3634 0.5139 -0.8900
33 1 2.2491 -1.6317 1.1525
34 1 3.2471 -2.3966 4.2422
35 1 2.4314 1.0990 -2.2971
36 1 3.2517 -0.0617 -4.3079
37 1 3.2436 -2.1174 -5.5998
38 1 2.9530 -3.6869 -4.8123
39 1 5.3752 -2.6274 -3.8187
40 1 7.2679 -4.3790 -4.6015
41 1 7.5579 -2.8091 -5.3888
42 1 7.3540 -3.8875 -7.6127
43 1 7.0640 -5.4570 -6.8249
44 1 9.2146 -6.8393 -6.8976
45 1 12.1005 -3.8672 -6.1994
46 1 2.5453 -3.8228 -2.4251
47 1 1.7325 -2.6620 -0.4114
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001484558979.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:58:30
Heat of formation + Delta-G solvation = 86.167629 kcal
Electronic energy + Delta-G solvation = -27714.171971 eV
Core-core repulsion = 23705.977408 eV
Total energy + Delta-G solvation = -4008.194563 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-42.42034 -40.22481 -39.27319 -36.16224 -35.26469 -34.63443 -32.45554 -31.59299
-31.28298 -30.77963 -30.13425 -28.39582 -26.50169 -24.88690 -23.89195 -22.66890
-22.37257 -22.02742 -21.62243 -20.67558 -19.77349 -18.19637 -17.52994 -17.11239
-16.49552 -16.40291 -15.91657 -15.49630 -15.27494 -15.20655 -14.77135 -14.55994
-14.39912 -14.03555 -13.88035 -13.55524 -13.40790 -13.18757 -13.02141 -12.97210
-12.69791 -12.36758 -12.30906 -12.01561 -11.76838 -11.70552 -11.22079 -10.97791
-10.90021 -10.68058 -10.51248 -10.35275 -10.31383 -10.16957 -10.07461 -10.02179
-9.74114 -9.39054 -9.04012 -8.72079 -8.40206 -7.05704 -5.84424 -3.13280
1.22925 1.37921 1.60920 1.84995 2.24287 2.60475 2.98021 3.38428
3.44297 3.46353 3.93985 3.95595 4.02344 4.20290 4.38084 4.53036
4.56817 4.65390 4.73041 4.84056 4.89872 5.13160 5.16346 5.22980
5.27382 5.31908 5.48888 5.50554 5.65299 5.71239 5.83638 5.88920
5.95857 6.04112 6.07240 6.17832 6.24732 6.28747 6.37082 6.44107
6.55557 6.64393 6.69728 6.89226 7.09443 7.14366 7.20617 7.63862
7.69425 7.82041 8.33799 9.45434 10.00522 10.35709 11.38230
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.011672 B = 0.001836 C = 0.001647
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2398.304810 B =15244.373301 C =16994.768380
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.203 3.797
3 H 0.056 0.944
4 N -0.721 5.721
5 C -0.240 4.240
6 H 0.072 0.928
7 C -0.013 4.013
8 N -0.932 5.932
9 Si 0.907 3.093
10 H -0.280 1.280
11 H -0.291 1.291
12 H -0.291 1.291
13 C -0.052 4.052
14 C -0.121 4.121
15 C -0.102 4.102
16 C -0.133 4.133
17 C 0.167 3.833
18 N -0.720 5.720
19 C 0.519 3.481
20 O -0.546 6.546
21 C -0.155 4.155
22 C 0.147 3.853
23 N -0.380 5.380
24 C 0.256 3.744
25 N -0.549 5.549
26 C 0.198 3.802
27 N -0.319 5.319
28 C -0.099 4.099
29 C -0.106 4.106
30 H 0.048 0.952
31 H 0.057 0.943
32 H 0.038 0.962
33 H 0.385 0.615
34 H 0.255 0.745
35 H 0.121 0.879
36 H 0.117 0.883
37 H 0.074 0.926
38 H 0.075 0.925
39 H 0.406 0.594
40 H 0.101 0.899
41 H 0.110 0.890
42 H 0.099 0.901
43 H 0.111 0.889
44 H 0.220 0.780
45 H 0.217 0.783
46 H 0.119 0.881
47 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.280 -5.014 -21.880 23.598
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.093 3.907
3 H 0.074 0.926
4 N -0.364 5.364
5 C -0.371 4.371
6 H 0.090 0.910
7 C -0.209 4.209
8 N -0.580 5.580
9 Si 0.738 3.262
10 H -0.205 1.205
11 H -0.218 1.218
12 H -0.218 1.218
13 C -0.053 4.053
14 C -0.140 4.140
15 C -0.120 4.120
16 C -0.134 4.134
17 C 0.045 3.955
18 N -0.371 5.371
19 C 0.305 3.695
20 O -0.425 6.425
21 C -0.195 4.195
22 C 0.025 3.975
23 N -0.171 5.171
24 C -0.041 4.041
25 N -0.276 5.276
26 C -0.105 4.105
27 N -0.147 5.147
28 C -0.117 4.117
29 C -0.124 4.124
30 H 0.067 0.933
31 H 0.077 0.923
32 H 0.057 0.943
33 H 0.220 0.780
34 H 0.065 0.935
35 H 0.139 0.861
36 H 0.135 0.865
37 H 0.092 0.908
38 H 0.093 0.907
39 H 0.241 0.759
40 H 0.120 0.880
41 H 0.128 0.872
42 H 0.117 0.883
43 H 0.130 0.870
44 H 0.236 0.764
45 H 0.233 0.767
46 H 0.137 0.863
47 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges 6.936 -4.623 -22.350 23.854
hybrid contribution 0.205 0.161 1.452 1.475
sum 7.141 -4.461 -20.898 22.531
Atomic orbital electron populations
1.22422 0.98181 1.01181 1.00197 1.19260 0.92195 0.95027 0.84198
0.92581 1.42523 1.78213 1.10704 1.04923 1.19288 1.36638 0.94029
0.87100 0.90989 1.24746 1.01998 0.96013 0.98135 1.69658 1.50811
1.08683 1.28873 0.86115 0.77342 0.78819 0.83897 1.20510 1.21844
1.21837 1.20546 0.95068 0.94058 0.95614 1.21030 0.99978 0.99857
0.93126 1.20927 0.99587 0.93482 0.98046 1.19631 1.04245 0.93862
0.95643 1.20164 0.79556 1.00103 0.95703 1.46161 1.09363 1.59586
1.22007 1.20283 0.88877 0.77528 0.82822 1.90731 1.70152 1.50830
1.30750 1.21883 0.93302 1.04516 0.99845 1.21537 0.73223 1.03758
0.99021 1.50626 1.08089 1.05746 1.52679 1.26139 0.88524 0.92846
0.96547 1.70572 1.15671 1.17218 1.24135 1.26052 0.97744 0.88544
0.98111 1.78048 0.97673 1.14092 1.24875 1.21015 0.98405 0.99460
0.92844 1.21097 0.99118 0.94451 0.97745 0.93309 0.92344 0.94302
0.78020 0.93492 0.86072 0.86474 0.90755 0.90687 0.75887 0.88022
0.87188 0.88271 0.87040 0.76411 0.76651 0.86336 0.85339
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.79 9.47 37.16 0.35 -2.43 16
2 C 0.20 3.89 3.09 -69.09 -0.21 3.67 16
3 H 0.06 1.08 7.94 -51.93 -0.41 0.67 16
4 N -0.72 -17.36 5.07 -54.56 -0.28 -17.64 16
5 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16
6 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16
7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16
8 N -0.93 -27.41 13.06 55.49 0.72 -26.68 16
9 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16
10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
13 C -0.05 -0.85 4.95 -104.63 -0.52 -1.37 16
14 C -0.12 -1.68 9.67 -39.58 -0.38 -2.07 16
15 C -0.10 -1.21 9.70 -39.58 -0.38 -1.59 16
16 C -0.13 -1.53 5.25 -104.62 -0.55 -2.08 16
17 C 0.17 1.65 5.80 -5.19 -0.03 1.62 16
18 N -0.72 -6.31 5.55 -61.47 -0.34 -6.65 16
19 C 0.52 4.64 7.83 -10.98 -0.09 4.55 16
20 O -0.55 -6.53 15.98 5.56 0.09 -6.44 16
21 C -0.15 -1.01 5.91 -27.88 -0.16 -1.17 16
22 C 0.15 0.91 5.84 -4.04 -0.02 0.89 16
23 N -0.38 -2.94 3.69 -62.63 -0.23 -3.17 16
24 C 0.26 1.78 12.63 -90.65 -1.14 0.63 16
25 N -0.55 -5.12 11.19 -15.83 -0.18 -5.29 16
26 C 0.20 1.73 13.03 -91.81 -1.20 0.53 16
27 N -0.32 -3.09 12.56 29.29 0.37 -2.73 16
28 C -0.10 -1.29 9.70 -39.58 -0.38 -1.67 16
29 C -0.11 -1.68 9.05 -39.58 -0.36 -2.04 16
30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16
31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16
33 H 0.38 9.74 6.07 -40.82 -0.25 9.49 16
34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16
35 H 0.12 1.50 8.04 -52.48 -0.42 1.08 16
36 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16
37 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16
38 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16
39 H 0.41 3.19 8.46 -40.82 -0.35 2.85 16
40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16
41 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16
42 H 0.10 0.67 8.10 -51.93 -0.42 0.25 16
43 H 0.11 0.50 8.04 -51.93 -0.42 0.08 16
44 H 0.22 0.55 8.06 -52.49 -0.42 0.13 16
45 H 0.22 1.16 8.06 -52.49 -0.42 0.73 16
46 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16
47 H 0.13 2.22 6.92 -52.49 -0.36 1.86 16
LS Contribution 404.16 15.07 6.09 6.09
Total: -1.00 -34.24 404.16 -10.93 -45.16
By element:
Atomic # 1 Polarization: 16.86 SS G_CDS: -6.82 Total: 10.04 kcal
Atomic # 6 Polarization: -4.25 SS G_CDS: -5.33 Total: -9.58 kcal
Atomic # 7 Polarization: -62.23 SS G_CDS: 0.07 Total: -62.17 kcal
Atomic # 8 Polarization: -6.53 SS G_CDS: 0.09 Total: -6.44 kcal
Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal
Total LS contribution 6.09 Total: 6.09 kcal
Total: -34.24 -10.93 -45.16 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484558979.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 131.332 kcal
(2) G-P(sol) polarization free energy of solvation -34.238 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.094 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.927 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.164 kcal
(6) G-S(sol) free energy of system = (1) + (5) 86.168 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds