Wall clock time and date at job start Sat Apr 11 2020 06:58:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08998 * 109.46863 * 2 1
4 4 N 1.46493 * 109.47318 * 119.99973 * 2 1 3
5 5 C 1.36934 * 120.00426 * 275.00188 * 4 2 1
6 6 H 1.08005 * 120.00009 * 359.97438 * 5 4 2
7 7 C 1.38813 * 119.99979 * 179.97438 * 5 4 2
8 8 N 1.31611 * 120.00560 * 0.02562 * 7 5 4
9 9 Si 1.86810 * 119.99894 * 179.97438 * 7 5 4
10 10 H 1.48500 * 109.46987 * 0.02562 * 9 7 5
11 11 H 1.48498 * 109.46992 * 119.99964 * 9 7 5
12 12 H 1.48498 * 109.47092 * 240.00282 * 9 7 5
13 13 C 1.50698 * 109.47194 * 240.00354 * 2 1 3
14 14 C 1.38234 * 119.99927 * 99.99758 * 13 2 1
15 15 C 1.38236 * 120.00173 * 180.02562 * 14 13 2
16 16 C 1.38242 * 119.99690 * 359.97438 * 15 14 13
17 17 C 1.50698 * 119.99895 * 179.97438 * 16 15 14
18 18 N 1.46506 * 109.46802 * 90.00381 * 17 16 15
19 19 C 1.34777 * 119.99507 * 180.02562 * 18 17 16
20 20 O 1.21282 * 120.00438 * 359.97438 * 19 18 17
21 21 C 1.50704 * 119.99537 * 179.97438 * 19 18 17
22 22 C 1.52999 * 109.46982 * 179.97438 * 21 19 18
23 23 N 1.46500 * 109.47084 * 179.97438 * 22 21 19
24 24 C 1.34429 * 126.81895 * 124.99739 * 23 22 21
25 25 N 1.30837 * 108.07952 * 180.02562 * 24 23 22
26 26 C 1.33246 * 109.82318 * 359.97438 * 25 24 23
27 27 N 1.30712 * 108.94935 * 0.27015 * 26 25 24
28 28 C 1.38235 * 119.99946 * 0.25980 * 16 15 14
29 29 C 1.38233 * 119.99842 * 280.02179 * 13 2 1
30 30 H 1.09005 * 109.47221 * 179.97438 * 1 2 3
31 31 H 1.09003 * 109.47112 * 299.99839 * 1 2 3
32 32 H 1.09003 * 109.47591 * 59.99668 * 1 2 3
33 33 H 0.97004 * 119.99706 * 95.00412 * 4 2 1
34 34 H 0.97002 * 120.00803 * 180.02562 * 8 7 5
35 35 H 1.08007 * 120.00221 * 359.97438 * 14 13 2
36 36 H 1.07998 * 120.00466 * 179.97438 * 15 14 13
37 37 H 1.08993 * 109.47220 * 330.00091 * 17 16 15
38 38 H 1.08996 * 109.46921 * 209.99907 * 17 16 15
39 39 H 0.96992 * 119.99953 * 359.97438 * 18 17 16
40 40 H 1.09002 * 109.47233 * 59.99445 * 21 19 18
41 41 H 1.08996 * 109.47047 * 299.99315 * 21 19 18
42 42 H 1.09002 * 109.47279 * 59.99854 * 22 21 19
43 43 H 1.08995 * 109.47424 * 300.00033 * 22 21 19
44 44 H 1.08000 * 125.96340 * 359.97438 * 24 23 22
45 45 H 1.08002 * 125.52127 * 179.97438 * 26 25 24
46 46 H 1.08002 * 119.99912 * 179.72810 * 28 16 15
47 47 H 1.07991 * 120.00117 * 0.02562 * 29 13 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 7 2.0183 -0.6906 1.1961
5 6 2.1491 -0.0075 2.3757
6 1 1.8926 1.0405 2.4242
7 6 2.6114 -0.6621 3.5092
8 7 2.9245 -1.9391 3.4501
9 14 2.7905 0.2699 5.1182
10 1 2.3765 1.6823 4.9209
11 1 1.9294 -0.3579 6.1524
12 1 4.2074 0.2261 5.5606
13 6 2.0323 -0.7103 -1.2305
14 6 2.4587 0.0196 -2.3242
15 6 2.9190 -0.6319 -3.4532
16 6 2.9534 -2.0135 -3.4881
17 6 3.4547 -2.7238 -4.7190
18 7 4.9001 -2.9350 -4.6064
19 6 5.5696 -3.5557 -5.5978
20 8 4.9756 -3.9399 -6.5829
21 6 7.0565 -3.7724 -5.4821
22 6 7.5654 -4.4937 -6.7318
23 7 9.0109 -4.7038 -6.6197
24 6 9.6650 -5.8741 -6.7191
25 7 10.9425 -5.6399 -6.5608
26 6 11.1417 -4.3379 -6.3597
27 7 9.9881 -3.7236 -6.3816
28 6 2.5225 -2.7434 -2.3962
29 6 2.0663 -2.0918 -1.2656
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 -0.3634 0.5139 -0.8900
33 1 2.2491 -1.6317 1.1525
34 1 3.2471 -2.3966 4.2422
35 1 2.4314 1.0990 -2.2971
36 1 3.2517 -0.0617 -4.3079
37 1 3.2436 -2.1174 -5.5998
38 1 2.9530 -3.6869 -4.8123
39 1 5.3752 -2.6274 -3.8187
40 1 7.2679 -4.3790 -4.6015
41 1 7.5579 -2.8091 -5.3888
42 1 7.3540 -3.8875 -7.6127
43 1 7.0640 -5.4570 -6.8249
44 1 9.2146 -6.8393 -6.8976
45 1 12.1005 -3.8672 -6.1994
46 1 2.5453 -3.8228 -2.4251
47 1 1.7325 -2.6620 -0.4114
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001484558979.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:58:29
Heat of formation + Delta-G solvation = 66.208441 kcal
Electronic energy + Delta-G solvation = -27715.037466 eV
Core-core repulsion = 23705.977408 eV
Total energy + Delta-G solvation = -4009.060058 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.98449 -41.04887 -40.31839 -37.48145 -35.98930 -35.63920 -34.13288 -32.26080
-32.14472 -31.83875 -31.23078 -29.98852 -27.41754 -26.01203 -25.37219 -23.79959
-23.01395 -22.90768 -22.46795 -21.38827 -21.05631 -19.40279 -18.79238 -17.86473
-17.26104 -17.13319 -17.03677 -16.51177 -16.43688 -16.03417 -15.82750 -15.67442
-15.18881 -15.07116 -14.97392 -14.65886 -14.62281 -14.38589 -14.22532 -13.78916
-13.57358 -13.52565 -13.41239 -13.06787 -12.98116 -12.87509 -12.71374 -12.43981
-12.27663 -12.09922 -12.01390 -11.61357 -11.54579 -11.21753 -11.02690 -10.97507
-10.79593 -10.65328 -10.15123 -9.79360 -9.54608 -9.03259 -7.95321 -5.23436
0.30419 0.53008 0.69062 1.32970 1.46990 1.47152 1.54160 1.57061
2.02097 2.24510 2.55192 2.93223 3.39285 3.47778 3.54978 3.62212
3.69325 3.85372 3.88388 3.98894 4.04178 4.13673 4.15481 4.20400
4.35685 4.36342 4.53851 4.59105 4.67138 4.70835 4.76413 4.78641
4.80353 5.00121 5.06604 5.11753 5.21932 5.28477 5.33504 5.41288
5.47490 5.50189 5.55435 5.62929 5.83901 5.89126 6.09840 6.27282
6.44815 7.11854 7.13046 7.33544 8.08162 8.32229 9.28348
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.011672 B = 0.001836 C = 0.001647
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2398.304810 B =15244.373301 C =16994.768380
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.198 3.802
3 H 0.054 0.946
4 N -0.734 5.734
5 C -0.237 4.237
6 H 0.077 0.923
7 C -0.077 4.077
8 N -0.969 5.969
9 Si 0.970 3.030
10 H -0.265 1.265
11 H -0.295 1.295
12 H -0.295 1.295
13 C -0.074 4.074
14 C -0.123 4.123
15 C -0.093 4.093
16 C -0.116 4.116
17 C 0.172 3.828
18 N -0.717 5.717
19 C 0.524 3.476
20 O -0.575 6.575
21 C -0.143 4.143
22 C 0.148 3.852
23 N -0.384 5.384
24 C 0.262 3.738
25 N -0.580 5.580
26 C 0.192 3.808
27 N -0.351 5.351
28 C -0.098 4.098
29 C -0.125 4.125
30 H 0.040 0.960
31 H 0.042 0.958
32 H 0.069 0.931
33 H 0.375 0.625
34 H 0.250 0.750
35 H 0.136 0.864
36 H 0.147 0.853
37 H 0.081 0.919
38 H 0.076 0.924
39 H 0.412 0.588
40 H 0.112 0.888
41 H 0.108 0.892
42 H 0.092 0.908
43 H 0.132 0.868
44 H 0.258 0.742
45 H 0.238 0.762
46 H 0.133 0.867
47 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.601 -4.584 -23.713 25.320
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C 0.090 3.910
3 H 0.072 0.928
4 N -0.375 5.375
5 C -0.369 4.369
6 H 0.095 0.905
7 C -0.269 4.269
8 N -0.620 5.620
9 Si 0.800 3.200
10 H -0.190 1.190
11 H -0.223 1.223
12 H -0.222 1.222
13 C -0.075 4.075
14 C -0.141 4.141
15 C -0.112 4.112
16 C -0.117 4.117
17 C 0.049 3.951
18 N -0.368 5.368
19 C 0.311 3.689
20 O -0.456 6.456
21 C -0.184 4.184
22 C 0.026 3.974
23 N -0.174 5.174
24 C -0.034 4.034
25 N -0.308 5.308
26 C -0.111 4.111
27 N -0.179 5.179
28 C -0.116 4.116
29 C -0.144 4.144
30 H 0.059 0.941
31 H 0.061 0.939
32 H 0.088 0.912
33 H 0.208 0.792
34 H 0.059 0.941
35 H 0.154 0.846
36 H 0.165 0.835
37 H 0.099 0.901
38 H 0.094 0.906
39 H 0.248 0.752
40 H 0.130 0.870
41 H 0.126 0.874
42 H 0.110 0.890
43 H 0.150 0.850
44 H 0.274 0.726
45 H 0.254 0.746
46 H 0.151 0.849
47 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges 7.231 -4.144 -24.210 25.604
hybrid contribution 0.078 0.017 1.864 1.866
sum 7.309 -4.126 -22.345 23.870
Atomic orbital electron populations
1.22261 0.96862 1.00880 1.00891 1.19424 0.93004 0.94731 0.83850
0.92765 1.42718 1.78452 1.10456 1.05905 1.19668 1.34720 0.94287
0.88176 0.90505 1.25524 1.03056 0.96917 1.01375 1.69810 1.52738
1.10176 1.29298 0.85111 0.76712 0.78263 0.79917 1.18978 1.22267
1.22199 1.20318 0.97395 0.94258 0.95543 1.21199 0.99466 1.00635
0.92820 1.21230 0.98131 0.93708 0.98105 1.19776 1.02532 0.93906
0.95455 1.20088 0.80149 1.00057 0.94783 1.46103 1.08955 1.59460
1.22282 1.20559 0.89571 0.76664 0.82099 1.90725 1.70918 1.52071
1.31855 1.21784 0.91370 1.04719 1.00515 1.21617 0.72614 1.04746
0.98422 1.50684 1.08291 1.05726 1.52717 1.26926 0.88003 0.93857
0.94664 1.70588 1.17109 1.17629 1.25498 1.26552 0.98456 0.88627
0.97446 1.77984 0.98368 1.15419 1.26136 1.21141 0.97849 1.00344
0.92294 1.20981 1.00792 0.94422 0.98165 0.94099 0.93890 0.91217
0.79202 0.94104 0.84576 0.83522 0.90070 0.90615 0.75210 0.86972
0.87352 0.88999 0.84998 0.72594 0.74643 0.84876 0.87900
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.18 9.47 71.98 0.68 -4.50 16
2 C 0.20 7.62 3.09 44.24 0.14 7.76 16
3 H 0.05 2.08 7.94 -2.39 -0.02 2.06 16
4 N -0.73 -36.22 5.07 -326.52 -1.66 -37.88 16
5 C -0.24 -12.90 9.93 84.03 0.83 -12.06 16
6 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16
7 C -0.08 -4.34 5.50 84.86 0.47 -3.88 16
8 N -0.97 -58.62 13.06 21.65 0.28 -58.34 16
9 Si 0.97 45.67 29.55 68.60 2.03 47.70 16
10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16
11 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16
12 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16
13 C -0.07 -2.41 4.95 -19.87 -0.10 -2.51 16
14 C -0.12 -3.16 9.67 22.27 0.22 -2.94 16
15 C -0.09 -1.93 9.70 22.27 0.22 -1.72 16
16 C -0.12 -2.39 5.25 -19.86 -0.10 -2.49 16
17 C 0.17 2.92 5.80 85.63 0.50 3.42 16
18 N -0.72 -10.79 5.55 -466.78 -2.59 -13.38 16
19 C 0.52 8.23 7.83 87.66 0.69 8.91 16
20 O -0.58 -12.59 15.98 -3.03 -0.05 -12.64 16
21 C -0.14 -1.59 5.91 29.85 0.18 -1.41 16
22 C 0.15 1.55 5.84 86.38 0.50 2.05 16
23 N -0.38 -5.31 3.69 -352.06 -1.30 -6.61 16
24 C 0.26 3.12 12.63 180.36 2.28 5.40 16
25 N -0.58 -10.13 11.19 -203.99 -2.28 -12.42 16
26 C 0.19 3.19 13.03 180.76 2.36 5.55 16
27 N -0.35 -6.49 12.56 -61.24 -0.77 -7.26 16
28 C -0.10 -2.44 9.70 22.27 0.22 -2.22 16
29 C -0.13 -4.02 9.05 22.27 0.20 -3.82 16
30 H 0.04 1.45 8.14 -2.38 -0.02 1.44 16
31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16
32 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16
33 H 0.37 19.78 6.07 -92.71 -0.56 19.22 16
34 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16
35 H 0.14 3.03 8.04 -2.91 -0.02 3.01 16
36 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16
37 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16
38 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16
39 H 0.41 5.46 8.46 -92.71 -0.78 4.67 16
40 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16
41 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16
42 H 0.09 1.12 8.10 -2.39 -0.02 1.10 16
43 H 0.13 0.83 8.04 -2.39 -0.02 0.81 16
44 H 0.26 0.52 8.06 -2.91 -0.02 0.49 16
45 H 0.24 2.37 8.06 -2.91 -0.02 2.35 16
46 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16
47 H 0.10 3.78 6.92 -2.91 -0.02 3.76 16
Total: -1.00 -75.03 404.16 2.58 -72.46
By element:
Atomic # 1 Polarization: 33.20 SS G_CDS: -0.35 Total: 32.85 kcal
Atomic # 6 Polarization: -13.74 SS G_CDS: 9.26 Total: -4.48 kcal
Atomic # 7 Polarization: -127.58 SS G_CDS: -8.32 Total: -135.89 kcal
Atomic # 8 Polarization: -12.59 SS G_CDS: -0.05 Total: -12.64 kcal
Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal
Total: -75.03 2.58 -72.46 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484558979.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 138.665 kcal
(2) G-P(sol) polarization free energy of solvation -75.032 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.633 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.457 kcal
(6) G-S(sol) free energy of system = (1) + (5) 66.208 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds