Wall clock time and date at job start Sat Apr 11 2020 06:57:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46501 * 109.47207 * 2 1
4 4 C 1.34769 * 120.00247 * 254.12990 * 3 2 1
5 5 O 1.21571 * 120.00326 * 184.53688 * 4 3 2
6 6 C 1.47690 * 120.00023 * 4.54322 * 4 3 2
7 7 C 1.40185 * 120.40980 * 22.43131 * 6 4 3
8 8 N 1.31191 * 121.37445 * 179.97438 * 7 6 4
9 9 C 1.32926 * 121.84719 * 0.02562 * 8 7 6
10 10 C 1.41075 * 120.20167 * 359.97438 * 9 8 7
11 11 C 1.39502 * 120.41062 * 202.15543 * 6 4 3
12 12 C 1.45967 * 106.43277 * 180.02562 * 10 9 8
13 13 C 1.50703 * 126.20276 * 180.02562 * 12 10 9
14 14 N 1.30201 * 107.59174 * 0.02562 * 12 10 9
15 15 N 1.36631 * 133.27513 * 179.97438 * 9 8 7
16 16 C 1.46499 * 125.33423 * 359.96301 * 15 9 8
17 17 C 1.46501 * 119.99548 * 74.13205 * 3 2 1
18 18 C 1.53944 * 113.73981 * 141.25780 * 17 3 2
19 19 N 1.47809 * 86.03827 * 90.88136 * 18 17 3
20 20 C 1.36943 * 134.46030 * 204.64632 * 19 18 17
21 21 H 1.07998 * 119.99860 * 179.86650 * 20 19 18
22 22 C 1.38811 * 119.99670 * 359.86775 * 20 19 18
23 23 N 1.31615 * 120.00162 * 359.97438 * 22 20 19
24 24 Si 1.86804 * 119.99815 * 180.02562 * 22 20 19
25 25 H 1.48497 * 109.47068 * 359.97438 * 24 22 20
26 26 H 1.48490 * 109.47334 * 119.99662 * 24 22 20
27 27 H 1.48497 * 109.46738 * 239.99675 * 24 22 20
28 28 C 1.47578 * 91.04881 * 24.54946 * 19 18 17
29 29 H 1.09001 * 109.46929 * 299.99925 * 1 2 3
30 30 H 1.09007 * 109.47018 * 59.99423 * 1 2 3
31 31 H 1.09001 * 109.47512 * 179.97438 * 1 2 3
32 32 H 1.09001 * 109.46929 * 240.00075 * 2 1 3
33 33 H 1.08993 * 109.46961 * 120.00402 * 2 1 3
34 34 H 1.07997 * 119.31332 * 0.02562 * 7 6 4
35 35 H 1.08005 * 121.02388 * 0.02562 * 11 6 4
36 36 H 1.09006 * 109.46883 * 269.96593 * 13 12 10
37 37 H 1.08993 * 109.47533 * 29.97396 * 13 12 10
38 38 H 1.09004 * 109.47204 * 149.97849 * 13 12 10
39 39 H 1.09004 * 109.47249 * 90.00394 * 16 15 9
40 40 H 1.08998 * 109.46974 * 209.99685 * 16 15 9
41 41 H 1.08995 * 109.47654 * 329.99786 * 16 15 9
42 42 H 1.08995 * 112.94741 * 9.67253 * 17 3 2
43 43 H 1.08995 * 113.77215 * 205.15084 * 18 17 3
44 44 H 1.09001 * 113.76953 * 336.54438 * 18 17 3
45 45 H 0.97009 * 120.00037 * 180.02562 * 23 22 20
46 46 H 1.09003 * 113.76890 * 221.15089 * 28 19 18
47 47 H 1.08997 * 113.77033 * 89.75557 * 28 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.5439 1.9102 -1.1226
5 8 3.0242 3.0268 -1.1014
6 6 2.5363 1.1334 -2.3787
7 6 1.6149 0.0933 -2.5642
8 7 1.5911 -0.6085 -3.6724
9 6 2.4354 -0.3711 -4.6712
10 6 3.3929 0.6591 -4.5614
11 6 3.4421 1.4293 -3.3975
12 6 4.1486 0.6552 -5.8102
13 6 5.2847 1.5793 -6.1660
14 7 3.6632 -0.2913 -6.5610
15 7 2.6168 -0.9409 -5.8997
16 6 1.8366 -2.0572 -6.4395
17 6 1.9354 2.1874 1.2204
18 6 3.1591 3.0930 1.4493
19 7 2.4110 4.1208 0.6952
20 6 2.7671 5.2195 -0.0407
21 1 2.0057 5.8263 -0.5080
22 6 4.1067 5.5531 -0.1859
23 7 5.0345 4.8138 0.3841
24 14 4.5924 7.0521 -1.1890
25 1 3.3713 7.7091 -1.7204
26 1 5.3328 8.0068 -0.3257
27 1 5.4594 6.6317 -2.3190
28 6 1.1270 3.4865 1.0514
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5140 -0.8900
31 1 -0.3634 -1.0277 -0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5139 0.8899
34 1 0.9095 -0.1345 -1.7789
35 1 4.1621 2.2269 -3.2879
36 1 4.8897 2.4676 -6.6591
37 1 5.8128 1.8720 -5.2586
38 1 5.9732 1.0668 -6.8379
39 1 0.9736 -1.6692 -6.9807
40 1 2.4587 -2.6406 -7.1182
41 1 1.4969 -2.6923 -5.6214
42 1 1.6512 1.6043 2.0964
43 1 3.3259 3.3501 2.4953
44 1 4.0619 2.7473 0.9458
45 1 5.9706 5.0472 0.2830
46 1 0.4103 3.4543 0.2308
47 1 0.6955 3.8594 1.9803
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000951083821.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:07
Heat of formation + Delta-G solvation = 179.544482 kcal
Electronic energy + Delta-G solvation = -31257.004938 eV
Core-core repulsion = 27252.859499 eV
Total energy + Delta-G solvation = -4004.145439 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-42.81309 -41.43626 -39.41510 -37.79231 -36.66368 -35.43831 -33.91797 -32.85127
-31.57635 -31.02762 -30.49640 -29.13387 -27.04485 -26.38766 -25.43483 -24.97612
-24.28601 -23.62616 -21.88404 -21.00474 -19.74807 -18.73655 -18.56449 -18.40011
-17.68689 -17.06473 -16.82711 -16.66584 -16.15599 -15.79582 -15.65161 -15.29580
-15.09285 -14.55622 -14.54443 -14.40788 -14.38433 -14.25000 -14.08341 -13.71697
-13.33669 -13.28456 -13.14522 -13.07001 -12.96294 -12.78507 -12.70792 -12.44326
-12.36968 -12.12394 -11.85495 -11.81055 -11.47064 -11.43908 -11.24364 -10.83992
-10.66627 -10.10427 -10.00663 -9.34117 -9.21793 -8.38252 -7.60613 -4.83259
-0.41587 -0.21225 1.04920 1.20794 1.44845 1.46173 1.53837 2.09235
2.17646 2.63332 2.78718 2.96737 3.13551 3.35752 3.52353 3.61632
3.67154 3.71780 3.94025 4.00598 4.08813 4.14290 4.28361 4.37904
4.42011 4.46417 4.55044 4.63249 4.64700 4.66527 4.70757 4.75576
4.86152 4.90735 4.94271 5.00378 5.07174 5.12389 5.14454 5.35082
5.38363 5.48086 5.49498 5.68560 5.73921 6.10958 6.26695 6.27043
6.66912 6.76586 7.18807 7.76874 7.93667 8.87122 9.58205
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.010774 B = 0.004443 C = 0.003308
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2598.249413 B = 6301.038425 C = 8463.090625
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.074 3.926
3 N -0.594 5.594
4 C 0.515 3.485
5 O -0.461 6.461
6 C -0.229 4.229
7 C 0.174 3.826
8 N -0.507 5.507
9 C 0.310 3.690
10 C -0.250 4.250
11 C 0.055 3.945
12 C 0.116 3.884
13 C -0.078 4.078
14 N -0.258 5.258
15 N -0.397 5.397
16 C 0.105 3.895
17 C 0.128 3.872
18 C 0.154 3.846
19 N -0.608 5.608
20 C -0.171 4.171
21 H 0.056 0.944
22 C -0.052 4.052
23 N -0.945 5.945
24 Si 0.947 3.053
25 H -0.278 1.278
26 H -0.298 1.298
27 H -0.300 1.300
28 C 0.103 3.897
29 H 0.073 0.927
30 H 0.052 0.948
31 H 0.100 0.900
32 H 0.096 0.904
33 H 0.098 0.902
34 H 0.227 0.773
35 H 0.133 0.867
36 H 0.097 0.903
37 H 0.086 0.914
38 H 0.101 0.899
39 H 0.081 0.919
40 H 0.104 0.896
41 H 0.101 0.899
42 H 0.131 0.869
43 H 0.020 0.980
44 H 0.038 0.962
45 H 0.233 0.767
46 H 0.036 0.964
47 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.677 -18.709 -7.644 21.994
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C -0.048 4.048
3 N -0.329 5.329
4 C 0.300 3.700
5 O -0.330 6.330
6 C -0.237 4.237
7 C 0.006 3.994
8 N -0.222 5.222
9 C 0.071 3.929
10 C -0.260 4.260
11 C 0.027 3.973
12 C -0.062 4.062
13 C -0.136 4.136
14 N -0.072 5.072
15 N -0.187 5.187
16 C -0.034 4.034
17 C 0.024 3.976
18 C 0.028 3.972
19 N -0.333 5.333
20 C -0.300 4.300
21 H 0.074 0.926
22 C -0.244 4.244
23 N -0.596 5.596
24 Si 0.779 3.221
25 H -0.203 1.203
26 H -0.226 1.226
27 H -0.228 1.228
28 C -0.023 4.023
29 H 0.092 0.908
30 H 0.071 0.929
31 H 0.118 0.882
32 H 0.114 0.886
33 H 0.116 0.884
34 H 0.242 0.758
35 H 0.150 0.850
36 H 0.115 0.885
37 H 0.104 0.896
38 H 0.119 0.881
39 H 0.100 0.900
40 H 0.123 0.877
41 H 0.119 0.881
42 H 0.148 0.852
43 H 0.038 0.962
44 H 0.056 0.944
45 H 0.042 0.958
46 H 0.054 0.946
47 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -8.824 -19.319 -9.223 23.155
hybrid contribution 1.159 2.314 0.261 2.601
sum -7.664 -17.005 -8.962 20.694
Atomic orbital electron populations
1.22319 0.93996 1.04286 1.02899 1.22529 0.95805 0.81478 1.04953
1.47411 1.62490 1.13790 1.09253 1.18535 0.81004 0.86868 0.83632
1.91456 1.40164 1.17559 1.83830 1.20970 1.02741 1.02606 0.97391
1.24760 0.94989 0.86877 0.92764 1.66924 1.24223 1.30942 1.00126
1.19432 0.92758 0.91812 0.88918 1.20508 1.03938 1.03394 0.98137
1.21125 0.93959 0.93465 0.88796 1.24015 0.97389 0.95387 0.89398
1.20462 0.92616 0.96649 1.03911 1.76612 1.01326 1.09340 1.19914
1.48351 1.29478 1.30970 1.09865 1.22128 0.94858 0.85194 1.01253
1.22688 0.96671 0.91226 0.87057 1.22428 0.95415 0.86623 0.92766
1.45811 1.02012 1.29544 1.55964 1.18776 0.90875 0.99452 1.20913
0.92625 1.24991 0.95709 1.00981 1.02697 1.69976 0.98283 1.40860
1.50528 0.85450 0.77540 0.80618 0.78498 1.20276 1.22618 1.22836
1.23175 0.90035 0.91381 0.97698 0.90757 0.92918 0.88182 0.88627
0.88386 0.75774 0.84954 0.88490 0.89563 0.88057 0.90009 0.87729
0.88079 0.85159 0.96196 0.94359 0.95796 0.94613 0.92423
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.59 9.06 71.98 0.65 -1.94 16
2 C 0.07 1.46 5.59 86.38 0.48 1.94 16
3 N -0.59 -18.81 2.77 -807.11 -2.24 -21.05 16
4 C 0.51 20.65 7.04 86.74 0.61 21.26 16
5 O -0.46 -24.07 10.12 -3.94 -0.04 -24.11 16
6 C -0.23 -7.85 5.61 -20.00 -0.11 -7.96 16
7 C 0.17 4.73 8.67 85.26 0.74 5.47 16
8 N -0.51 -14.14 10.37 -192.36 -1.99 -16.13 16
9 C 0.31 9.27 7.96 134.18 1.07 10.34 16
10 C -0.25 -7.95 6.33 -20.24 -0.13 -8.08 16
11 C 0.06 1.95 9.76 22.92 0.22 2.17 16
12 C 0.12 3.21 7.44 44.80 0.33 3.54 16
13 C -0.08 -1.60 10.48 71.24 0.75 -0.85 16
14 N -0.26 -7.05 12.39 -43.68 -0.54 -7.59 16
15 N -0.40 -10.31 4.03 -366.44 -1.48 -11.79 16
16 C 0.10 1.67 11.43 127.77 1.46 3.13 16
17 C 0.13 4.37 4.51 46.75 0.21 4.58 16
18 C 0.15 7.36 6.46 86.44 0.56 7.91 16
19 N -0.61 -31.76 2.10 -716.72 -1.50 -33.27 16
20 C -0.17 -10.18 8.72 84.03 0.73 -9.45 16
21 H 0.06 3.34 7.83 -2.91 -0.02 3.31 16
22 C -0.05 -3.14 5.01 84.86 0.42 -2.72 16
23 N -0.94 -59.97 11.39 21.65 0.25 -59.72 16
24 Si 0.95 49.68 29.55 68.60 2.03 51.70 16
25 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16
26 H -0.30 -15.52 7.11 99.48 0.71 -14.82 16
27 H -0.30 -15.84 7.11 99.48 0.71 -15.13 16
28 C 0.10 4.08 8.42 86.48 0.73 4.81 16
29 H 0.07 1.08 8.06 -2.39 -0.02 1.06 16
30 H 0.05 0.91 7.02 -2.38 -0.02 0.89 16
31 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16
32 H 0.10 1.92 4.03 -2.66 -0.01 1.91 16
33 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16
34 H 0.23 4.72 2.33 -2.91 -0.01 4.72 16
35 H 0.13 5.10 7.87 -2.91 -0.02 5.08 16
36 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16
37 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16
38 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16
39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16
40 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16
41 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16
42 H 0.13 3.19 8.08 -2.39 -0.02 3.17 16
43 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16
44 H 0.04 2.15 6.37 -2.39 -0.02 2.13 16
45 H 0.23 14.61 8.31 -92.70 -0.77 13.84 16
46 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16
47 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16
Total: -1.00 -83.51 375.99 4.22 -79.29
By element:
Atomic # 1 Polarization: 7.50 SS G_CDS: 1.00 Total: 8.50 kcal
Atomic # 6 Polarization: 25.44 SS G_CDS: 8.73 Total: 34.17 kcal
Atomic # 7 Polarization: -142.05 SS G_CDS: -7.50 Total: -149.55 kcal
Atomic # 8 Polarization: -24.07 SS G_CDS: -0.04 Total: -24.11 kcal
Atomic # 14 Polarization: 49.68 SS G_CDS: 2.03 Total: 51.70 kcal
Total: -83.51 4.22 -79.29 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000951083821.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 258.838 kcal
(2) G-P(sol) polarization free energy of solvation -83.510 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.328 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.294 kcal
(6) G-S(sol) free energy of system = (1) + (5) 179.544 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds