Wall clock time and date at job start Sat Apr 11 2020 06:58:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46503 * 109.47096 * 2 1
4 4 C 1.36930 * 120.00149 * 275.30863 * 3 2 1
5 5 H 1.07998 * 120.00265 * 37.57811 * 4 3 2
6 6 C 1.38816 * 120.00172 * 217.58170 * 4 3 2
7 7 N 1.31618 * 119.99995 * 21.42248 * 6 4 3
8 8 Si 1.86801 * 119.99945 * 201.42794 * 6 4 3
9 9 H 1.48500 * 109.47108 * 89.99722 * 8 6 4
10 10 H 1.48502 * 109.47109 * 209.99617 * 8 6 4
11 11 H 1.48502 * 109.46947 * 329.99678 * 8 6 4
12 12 C 1.46502 * 119.99785 * 95.31290 * 3 2 1
13 13 C 1.53003 * 109.46869 * 270.00058 * 12 3 2
14 14 C 1.53003 * 109.47274 * 180.02562 * 13 12 3
15 15 N 1.46492 * 109.47111 * 179.97438 * 14 13 12
16 16 C 1.34776 * 119.99959 * 179.97438 * 15 14 13
17 17 O 1.21573 * 120.00146 * 0.02562 * 16 15 14
18 18 C 1.47715 * 120.00244 * 179.72501 * 16 15 14
19 19 C 1.39710 * 120.02396 * 359.72887 * 18 16 15
20 20 C 1.37666 * 119.97527 * 179.76678 * 19 18 16
21 21 C 1.39505 * 120.02507 * 0.50762 * 20 19 18
22 22 C 1.48287 * 119.97807 * 179.72074 * 21 20 19
23 23 N 1.34017 * 125.65187 * 0.02752 * 22 21 20
24 24 C 1.30639 * 109.78717 * 179.97438 * 23 22 21
25 25 N 1.34568 * 108.30382 * 359.97438 * 24 23 22
26 26 H 0.97002 * 126.74824 * 180.02562 * 25 24 23
27 27 N 1.31549 * 125.65453 * 179.71177 * 22 21 20
28 28 C 1.39499 * 120.04637 * 359.74601 * 21 20 19
29 29 C 1.37660 * 120.02968 * 359.97438 * 28 21 20
30 30 H 1.09003 * 109.47244 * 179.97438 * 1 2 3
31 31 H 1.09003 * 109.47223 * 300.00035 * 1 2 3
32 32 H 1.09003 * 109.47085 * 59.99829 * 1 2 3
33 33 H 1.09003 * 109.47223 * 239.99965 * 2 1 3
34 34 H 1.09003 * 109.47085 * 120.00171 * 2 1 3
35 35 H 0.96994 * 119.99943 * 180.02562 * 7 6 4
36 36 H 1.09001 * 109.47398 * 150.00078 * 12 3 2
37 37 H 1.09004 * 109.47217 * 29.99384 * 12 3 2
38 38 H 1.08994 * 109.47377 * 59.99606 * 13 12 3
39 39 H 1.09004 * 109.46651 * 299.99672 * 13 12 3
40 40 H 1.09000 * 109.46876 * 59.99732 * 14 13 12
41 41 H 1.09004 * 109.46412 * 299.99990 * 14 13 12
42 42 H 0.96997 * 120.00351 * 0.02562 * 15 14 13
43 43 H 1.07999 * 120.01477 * 0.02562 * 19 18 16
44 44 H 1.08001 * 119.98907 * 180.27529 * 20 19 18
45 45 H 1.07997 * 125.84685 * 180.02562 * 24 23 22
46 46 H 1.07999 * 119.98625 * 179.97438 * 28 21 20
47 47 H 1.08002 * 120.01633 * 179.97438 * 29 28 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.1431 2.0633 -1.1807
5 1 1.4106 1.9279 -1.9627
6 6 3.2112 2.9289 -1.3728
7 7 4.3027 2.7981 -0.6490
8 14 3.0994 4.2796 -2.6584
9 1 2.5376 5.5069 -2.0393
10 1 4.4550 4.5697 -3.1908
11 1 2.2166 3.8358 -3.7670
12 6 2.3732 2.0327 1.2633
13 6 1.1426 2.7382 1.8366
14 6 1.5133 3.4191 3.1557
15 7 0.3351 4.0950 3.7043
16 6 0.4249 4.7661 4.8697
17 8 1.4837 4.8108 5.4654
18 6 -0.7616 5.4528 5.4198
19 6 -1.9756 5.4119 4.7297
20 6 -3.0820 6.0482 5.2458
21 6 -2.9885 6.7427 6.4520
22 6 -4.1793 7.4330 7.0038
23 7 -5.3954 7.4627 6.4414
24 6 -6.2115 8.1567 7.1891
25 7 -5.5307 8.5948 8.2640
26 1 -5.8788 9.1346 8.9909
27 7 -4.2185 8.1127 8.1294
28 6 -1.7754 6.7887 7.1393
29 6 -0.6693 6.1483 6.6281
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3634 0.5138 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 1.8933 -0.5138 -0.8900
34 1 1.8933 -0.5139 0.8900
35 1 5.0489 3.4031 -0.7829
36 1 3.1617 2.7641 1.0861
37 1 2.7255 1.2832 1.9722
38 1 0.3541 2.0068 2.0139
39 1 0.7903 3.4876 1.1278
40 1 2.3016 4.1505 2.9780
41 1 1.8658 2.6699 3.8647
42 1 -0.5098 4.0591 3.2292
43 1 -2.0473 4.8777 3.7938
44 1 -4.0217 6.0130 4.7147
45 1 -7.2542 8.3457 6.9806
46 1 -1.7040 7.3270 8.0729
47 1 0.2699 6.1844 7.1601
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001660609806.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:58:52
Heat of formation + Delta-G solvation = 90.777913 kcal
Electronic energy + Delta-G solvation = -28061.376919 eV
Core-core repulsion = 24053.382273 eV
Total energy + Delta-G solvation = -4007.994646 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 2.64 seconds
Orbital eigenvalues (eV)
-42.53545 -40.17735 -38.41316 -36.41447 -34.81998 -33.64291 -32.43661 -31.84251
-31.47310 -31.11896 -30.19380 -28.46313 -25.76159 -24.62152 -23.76287 -23.19626
-22.28990 -21.32022 -21.02221 -20.35327 -19.91265 -18.96430 -17.87003 -16.73094
-16.38479 -15.96069 -15.83581 -15.43860 -15.32897 -14.90650 -14.84452 -14.43482
-14.10315 -13.85024 -13.73892 -13.44906 -13.29367 -12.89628 -12.69906 -12.55906
-12.35758 -12.32336 -11.57819 -11.46541 -11.35445 -11.13110 -11.01457 -10.89872
-10.74838 -10.58588 -10.55389 -10.46221 -10.43662 -10.05326 -9.84490 -9.61663
-9.51488 -9.27998 -8.98940 -8.73365 -8.45267 -6.54634 -5.76373 -3.35825
0.21723 1.12644 1.23760 2.10970 2.32708 3.03648 3.28369 3.37689
3.45482 3.45941 3.47378 3.75441 4.07666 4.40198 4.49175 4.62251
4.66738 4.77732 5.05922 5.23460 5.26599 5.38174 5.42420 5.57816
5.68265 5.69129 5.77361 5.85702 6.00682 6.06789 6.09993 6.10927
6.14462 6.30621 6.37805 6.45022 6.48032 6.49134 6.53858 6.61094
6.77264 6.79836 6.93401 7.11543 7.19844 7.50878 7.64138 7.70349
7.84687 8.30406 8.54678 9.21965 9.84240 10.43215 11.22975
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.015094 B = 0.001862 C = 0.001855
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1854.618408 B =15035.026122 C =15089.135505
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.140 3.860
3 N -0.584 5.584
4 C -0.260 4.260
5 H 0.059 0.941
6 C 0.012 3.988
7 N -0.886 5.886
8 Si 0.895 3.105
9 H -0.286 1.286
10 H -0.291 1.291
11 H -0.278 1.278
12 C 0.151 3.849
13 C -0.147 4.147
14 C 0.120 3.880
15 N -0.718 5.718
16 C 0.550 3.450
17 O -0.538 6.538
18 C -0.111 4.111
19 C -0.091 4.091
20 C -0.081 4.081
21 C -0.001 4.001
22 C 0.269 3.731
23 N -0.533 5.533
24 C 0.266 3.734
25 N -0.484 5.484
26 H 0.444 0.556
27 N -0.302 5.302
28 C -0.091 4.091
29 C -0.065 4.065
30 H 0.034 0.966
31 H 0.043 0.957
32 H 0.048 0.952
33 H 0.042 0.958
34 H 0.033 0.967
35 H 0.255 0.745
36 H 0.095 0.905
37 H 0.025 0.975
38 H 0.051 0.949
39 H 0.065 0.935
40 H 0.069 0.931
41 H 0.064 0.936
42 H 0.398 0.602
43 H 0.135 0.865
44 H 0.142 0.858
45 H 0.226 0.774
46 H 0.137 0.863
47 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.421 9.743 17.612 29.394
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C 0.013 3.987
3 N -0.304 5.304
4 C -0.390 4.390
5 H 0.077 0.923
6 C -0.188 4.188
7 N -0.528 5.528
8 Si 0.725 3.275
9 H -0.213 1.213
10 H -0.218 1.218
11 H -0.203 1.203
12 C 0.024 3.976
13 C -0.188 4.188
14 C -0.003 4.003
15 N -0.369 5.369
16 C 0.336 3.664
17 O -0.416 6.416
18 C -0.115 4.115
19 C -0.110 4.110
20 C -0.101 4.101
21 C -0.004 4.004
22 C -0.010 4.010
23 N -0.260 5.260
24 C -0.033 4.033
25 N -0.203 5.203
26 H 0.290 0.710
27 N -0.131 5.131
28 C -0.112 4.112
29 C -0.084 4.084
30 H 0.053 0.947
31 H 0.062 0.938
32 H 0.067 0.933
33 H 0.061 0.939
34 H 0.052 0.948
35 H 0.065 0.935
36 H 0.113 0.887
37 H 0.044 0.956
38 H 0.070 0.930
39 H 0.083 0.917
40 H 0.087 0.913
41 H 0.082 0.918
42 H 0.234 0.766
43 H 0.153 0.847
44 H 0.160 0.840
45 H 0.242 0.758
46 H 0.154 0.846
47 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges -19.941 9.739 18.124 28.652
hybrid contribution -1.192 1.281 -0.408 1.796
sum -21.133 11.020 17.716 29.697
Atomic orbital electron populations
1.22370 1.00171 0.98881 1.01106 1.20850 0.91673 0.87411 0.98718
1.43742 1.76042 1.08174 1.02490 1.18989 1.04625 1.21195 0.94174
0.92308 1.25197 0.94222 1.01311 0.98085 1.69997 1.03191 1.37190
1.42422 0.86414 0.76932 0.82672 0.81492 1.21287 1.21759 1.20299
1.20797 0.94418 0.96661 0.85762 1.22551 1.02445 0.99906 0.93872
1.21532 0.86917 0.96189 0.95696 1.46121 1.14732 1.53186 1.22850
1.18240 0.87913 0.79013 0.81195 1.90781 1.29602 1.61421 1.59841
1.20245 0.93993 1.00579 0.96733 1.21305 0.91619 0.98481 0.99572
1.21121 0.99280 0.95426 0.94267 1.17613 0.89097 0.98283 0.95406
1.22343 0.92599 0.96216 0.89840 1.70535 1.00938 1.22930 1.31636
1.26148 1.00043 0.92614 0.84472 1.48154 1.07887 1.42640 1.21570
0.71026 1.78267 0.96659 1.18324 1.19883 1.21140 0.91092 0.98913
1.00012 1.21202 0.99002 0.94092 0.94122 0.94653 0.93783 0.93277
0.93910 0.94831 0.93507 0.88721 0.95643 0.92991 0.91662 0.91281
0.91762 0.76636 0.84734 0.84014 0.75753 0.84560 0.83926
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.93 10.21 37.16 0.38 -2.55 16
2 C 0.14 2.92 6.44 -4.04 -0.03 2.89 16
3 N -0.58 -14.12 2.43 -173.23 -0.42 -14.54 16
4 C -0.26 -6.94 9.45 -15.06 -0.14 -7.08 16
5 H 0.06 1.58 7.92 -52.49 -0.42 1.16 16
6 C 0.01 0.34 4.95 -17.43 -0.09 0.25 16
7 N -0.89 -25.25 11.47 55.49 0.64 -24.62 16
8 Si 0.90 21.37 29.60 -169.99 -5.03 16.34 16
9 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
12 C 0.15 3.39 5.33 -4.04 -0.02 3.37 16
13 C -0.15 -2.69 5.65 -26.73 -0.15 -2.84 16
14 C 0.12 2.01 5.67 -4.04 -0.02 1.99 16
15 N -0.72 -10.24 5.50 -61.29 -0.34 -10.58 16
16 C 0.55 8.38 7.77 -12.39 -0.10 8.28 16
17 O -0.54 -10.10 16.33 5.30 0.09 -10.01 16
18 C -0.11 -1.38 5.88 -104.92 -0.62 -1.99 16
19 C -0.09 -0.92 9.52 -39.24 -0.37 -1.30 16
20 C -0.08 -0.80 9.67 -39.32 -0.38 -1.18 16
21 C 0.00 -0.01 5.88 -104.82 -0.62 -0.63 16
22 C 0.27 2.85 7.77 -156.60 -1.22 1.63 16
23 N -0.53 -4.95 10.81 -12.40 -0.13 -5.09 16
24 C 0.27 1.32 13.11 -90.69 -1.19 0.14 16
25 N -0.48 -2.53 7.44 29.52 0.22 -2.31 16
26 H 0.44 0.56 8.96 -182.33 -1.63 -1.08 16
27 N -0.30 -2.92 12.42 32.09 0.40 -2.52 16
28 C -0.09 -0.95 9.66 -39.32 -0.38 -1.33 16
29 C -0.07 -0.75 9.58 -39.24 -0.38 -1.13 16
30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16
31 H 0.04 0.75 6.64 -51.93 -0.34 0.40 16
32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16
33 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16
34 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16
35 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16
36 H 0.10 2.44 5.52 -51.93 -0.29 2.16 16
37 H 0.03 0.55 7.86 -51.93 -0.41 0.14 16
38 H 0.05 0.89 6.64 -51.93 -0.34 0.54 16
39 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16
40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16
41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
42 H 0.40 4.63 6.49 -40.82 -0.26 4.36 16
43 H 0.13 1.09 6.39 -52.49 -0.34 0.75 16
44 H 0.14 1.25 7.82 -52.49 -0.41 0.84 16
45 H 0.23 -0.09 8.06 -52.49 -0.42 -0.51 16
46 H 0.14 1.25 7.82 -52.49 -0.41 0.84 16
47 H 0.14 1.62 7.64 -52.49 -0.40 1.22 16
LS Contribution 396.57 15.07 5.98 5.98
Total: -1.00 -35.06 396.57 -11.68 -46.74
By element:
Atomic # 1 Polarization: 9.86 SS G_CDS: -7.75 Total: 2.11 kcal
Atomic # 6 Polarization: 3.82 SS G_CDS: -5.32 Total: -1.50 kcal
Atomic # 7 Polarization: -60.02 SS G_CDS: 0.36 Total: -59.65 kcal
Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal
Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal
Total LS contribution 5.98 Total: 5.98 kcal
Total: -35.06 -11.68 -46.74 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001660609806.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 137.517 kcal
(2) G-P(sol) polarization free energy of solvation -35.062 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.455 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.678 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.739 kcal
(6) G-S(sol) free energy of system = (1) + (5) 90.778 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.64 seconds