Wall clock time and date at job start Sat Apr 11 2020 06:58:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46503 * 109.47096 * 2 1
4 4 C 1.36930 * 120.00149 * 275.30863 * 3 2 1
5 5 H 1.07998 * 120.00265 * 37.57811 * 4 3 2
6 6 C 1.38816 * 120.00172 * 217.58170 * 4 3 2
7 7 N 1.31618 * 119.99995 * 21.42248 * 6 4 3
8 8 Si 1.86801 * 119.99945 * 201.42794 * 6 4 3
9 9 H 1.48500 * 109.47108 * 89.99722 * 8 6 4
10 10 H 1.48502 * 109.47109 * 209.99617 * 8 6 4
11 11 H 1.48502 * 109.46947 * 329.99678 * 8 6 4
12 12 C 1.46502 * 119.99785 * 95.31290 * 3 2 1
13 13 C 1.53003 * 109.46869 * 270.00058 * 12 3 2
14 14 C 1.53003 * 109.47274 * 180.02562 * 13 12 3
15 15 N 1.46492 * 109.47111 * 179.97438 * 14 13 12
16 16 C 1.34776 * 119.99959 * 179.97438 * 15 14 13
17 17 O 1.21573 * 120.00146 * 0.02562 * 16 15 14
18 18 C 1.47715 * 120.00244 * 179.72501 * 16 15 14
19 19 C 1.39710 * 120.02396 * 359.72887 * 18 16 15
20 20 C 1.37666 * 119.97527 * 179.76678 * 19 18 16
21 21 C 1.39505 * 120.02507 * 0.50762 * 20 19 18
22 22 C 1.48287 * 119.97807 * 179.72074 * 21 20 19
23 23 N 1.34017 * 125.65187 * 0.02752 * 22 21 20
24 24 C 1.30639 * 109.78717 * 179.97438 * 23 22 21
25 25 N 1.34568 * 108.30382 * 359.97438 * 24 23 22
26 26 H 0.97002 * 126.74824 * 180.02562 * 25 24 23
27 27 N 1.31549 * 125.65453 * 179.71177 * 22 21 20
28 28 C 1.39499 * 120.04637 * 359.74601 * 21 20 19
29 29 C 1.37660 * 120.02968 * 359.97438 * 28 21 20
30 30 H 1.09003 * 109.47244 * 179.97438 * 1 2 3
31 31 H 1.09003 * 109.47223 * 300.00035 * 1 2 3
32 32 H 1.09003 * 109.47085 * 59.99829 * 1 2 3
33 33 H 1.09003 * 109.47223 * 239.99965 * 2 1 3
34 34 H 1.09003 * 109.47085 * 120.00171 * 2 1 3
35 35 H 0.96994 * 119.99943 * 180.02562 * 7 6 4
36 36 H 1.09001 * 109.47398 * 150.00078 * 12 3 2
37 37 H 1.09004 * 109.47217 * 29.99384 * 12 3 2
38 38 H 1.08994 * 109.47377 * 59.99606 * 13 12 3
39 39 H 1.09004 * 109.46651 * 299.99672 * 13 12 3
40 40 H 1.09000 * 109.46876 * 59.99732 * 14 13 12
41 41 H 1.09004 * 109.46412 * 299.99990 * 14 13 12
42 42 H 0.96997 * 120.00351 * 0.02562 * 15 14 13
43 43 H 1.07999 * 120.01477 * 0.02562 * 19 18 16
44 44 H 1.08001 * 119.98907 * 180.27529 * 20 19 18
45 45 H 1.07997 * 125.84685 * 180.02562 * 24 23 22
46 46 H 1.07999 * 119.98625 * 179.97438 * 28 21 20
47 47 H 1.08002 * 120.01633 * 179.97438 * 29 28 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.1431 2.0633 -1.1807
5 1 1.4106 1.9279 -1.9627
6 6 3.2112 2.9289 -1.3728
7 7 4.3027 2.7981 -0.6490
8 14 3.0994 4.2796 -2.6584
9 1 2.5376 5.5069 -2.0393
10 1 4.4550 4.5697 -3.1908
11 1 2.2166 3.8358 -3.7670
12 6 2.3732 2.0327 1.2633
13 6 1.1426 2.7382 1.8366
14 6 1.5133 3.4191 3.1557
15 7 0.3351 4.0950 3.7043
16 6 0.4249 4.7661 4.8697
17 8 1.4837 4.8108 5.4654
18 6 -0.7616 5.4528 5.4198
19 6 -1.9756 5.4119 4.7297
20 6 -3.0820 6.0482 5.2458
21 6 -2.9885 6.7427 6.4520
22 6 -4.1793 7.4330 7.0038
23 7 -5.3954 7.4627 6.4414
24 6 -6.2115 8.1567 7.1891
25 7 -5.5307 8.5948 8.2640
26 1 -5.8788 9.1346 8.9909
27 7 -4.2185 8.1127 8.1294
28 6 -1.7754 6.7887 7.1393
29 6 -0.6693 6.1483 6.6281
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3634 0.5138 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 1.8933 -0.5138 -0.8900
34 1 1.8933 -0.5139 0.8900
35 1 5.0489 3.4031 -0.7829
36 1 3.1617 2.7641 1.0861
37 1 2.7255 1.2832 1.9722
38 1 0.3541 2.0068 2.0139
39 1 0.7903 3.4876 1.1278
40 1 2.3016 4.1505 2.9780
41 1 1.8658 2.6699 3.8647
42 1 -0.5098 4.0591 3.2292
43 1 -2.0473 4.8777 3.7938
44 1 -4.0217 6.0130 4.7147
45 1 -7.2542 8.3457 6.9806
46 1 -1.7040 7.3270 8.0729
47 1 0.2699 6.1844 7.1601
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001660609806.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:58:50
Heat of formation + Delta-G solvation = 69.546794 kcal
Electronic energy + Delta-G solvation = -28062.297569 eV
Core-core repulsion = 24053.382273 eV
Total energy + Delta-G solvation = -4008.915297 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 1.36 seconds
Orbital eigenvalues (eV)
-43.07318 -41.25193 -39.41975 -38.14300 -36.25044 -34.33588 -33.78979 -33.21156
-32.60119 -31.98217 -31.12133 -30.10016 -27.27135 -25.92753 -24.97457 -24.09215
-23.01249 -22.53460 -22.24133 -21.87532 -21.08407 -19.46623 -18.90037 -18.59464
-17.34665 -17.01699 -16.80608 -16.57733 -16.49317 -16.07168 -15.92123 -15.76239
-15.41065 -15.15716 -14.98046 -14.67732 -14.36066 -14.24016 -14.02765 -13.77189
-13.31787 -13.22032 -13.15806 -13.12477 -12.73063 -12.70512 -12.56193 -12.29914
-12.19216 -12.09965 -11.90363 -11.53313 -11.43870 -11.22775 -11.17539 -11.08849
-11.05728 -10.47321 -10.19319 -10.08349 -9.63692 -8.52173 -7.78190 -5.42438
-0.62173 0.32337 0.69216 1.46941 1.49836 1.55529 1.57346 1.72482
2.09211 2.12367 2.53138 2.86331 2.93577 3.26562 3.49937 3.64836
3.69590 3.85970 3.94542 4.13993 4.18976 4.25963 4.33300 4.44693
4.48367 4.57397 4.64638 4.76575 4.79882 4.91373 4.93195 4.98098
5.02747 5.07528 5.09936 5.19460 5.23739 5.35202 5.36873 5.37205
5.40262 5.49540 5.63881 5.72365 5.72877 5.87812 6.21448 6.49635
6.50957 6.98118 7.13684 7.21744 7.91746 8.44188 9.16229
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.015094 B = 0.001862 C = 0.001855
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1854.618408 B =15035.026122 C =15089.135505
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.133 3.867
3 N -0.601 5.601
4 C -0.261 4.261
5 H 0.056 0.944
6 C -0.037 4.037
7 N -0.918 5.918
8 Si 0.954 3.046
9 H -0.285 1.285
10 H -0.297 1.297
11 H -0.268 1.268
12 C 0.150 3.850
13 C -0.124 4.124
14 C 0.132 3.868
15 N -0.707 5.707
16 C 0.551 3.449
17 O -0.581 6.581
18 C -0.129 4.129
19 C -0.080 4.080
20 C -0.080 4.080
21 C -0.002 4.002
22 C 0.249 3.751
23 N -0.567 5.567
24 C 0.283 3.717
25 N -0.472 5.472
26 H 0.461 0.539
27 N -0.330 5.330
28 C -0.092 4.092
29 C -0.070 4.070
30 H 0.064 0.936
31 H 0.052 0.948
32 H 0.036 0.964
33 H 0.028 0.972
34 H 0.044 0.956
35 H 0.250 0.750
36 H 0.059 0.941
37 H 0.028 0.972
38 H 0.072 0.928
39 H 0.053 0.947
40 H 0.046 0.954
41 H 0.063 0.937
42 H 0.414 0.586
43 H 0.157 0.843
44 H 0.156 0.844
45 H 0.278 0.722
46 H 0.145 0.855
47 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.149 10.257 17.933 32.546
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C 0.008 3.992
3 N -0.322 5.322
4 C -0.392 4.392
5 H 0.074 0.926
6 C -0.235 4.235
7 N -0.562 5.562
8 Si 0.782 3.218
9 H -0.212 1.212
10 H -0.224 1.224
11 H -0.193 1.193
12 C 0.023 3.977
13 C -0.164 4.164
14 C 0.008 3.992
15 N -0.359 5.359
16 C 0.339 3.661
17 O -0.462 6.462
18 C -0.133 4.133
19 C -0.098 4.098
20 C -0.100 4.100
21 C -0.005 4.005
22 C -0.031 4.031
23 N -0.295 5.295
24 C -0.015 4.015
25 N -0.192 5.192
26 H 0.310 0.690
27 N -0.161 5.161
28 C -0.112 4.112
29 C -0.089 4.089
30 H 0.083 0.917
31 H 0.071 0.929
32 H 0.055 0.945
33 H 0.047 0.953
34 H 0.063 0.937
35 H 0.059 0.941
36 H 0.077 0.923
37 H 0.046 0.954
38 H 0.091 0.909
39 H 0.072 0.928
40 H 0.064 0.936
41 H 0.082 0.918
42 H 0.252 0.748
43 H 0.175 0.825
44 H 0.173 0.827
45 H 0.293 0.707
46 H 0.162 0.838
47 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -23.740 10.254 18.455 31.770
hybrid contribution -0.168 1.123 -0.417 1.210
sum -23.908 11.377 18.038 32.038
Atomic orbital electron populations
1.22169 0.97169 1.00770 1.00914 1.21006 0.93918 0.85692 0.98593
1.43980 1.76435 1.09546 1.02247 1.19185 1.04003 1.21122 0.94863
0.92643 1.25856 0.94057 1.03381 1.00173 1.70130 1.03798 1.38016
1.44264 0.85488 0.76503 0.80170 0.79637 1.21182 1.22400 1.19255
1.20699 0.95290 0.96122 0.85567 1.22184 1.00780 0.99616 0.93791
1.21198 0.87313 0.95613 0.95097 1.45903 1.14592 1.52681 1.22741
1.18657 0.88220 0.78423 0.80778 1.90756 1.31442 1.63015 1.61033
1.20042 0.93658 1.01992 0.97645 1.21481 0.90581 0.97862 0.99894
1.21268 0.99634 0.94990 0.94077 1.17857 0.89417 0.97727 0.95497
1.22331 0.93120 0.97112 0.90508 1.70500 1.00984 1.24853 1.33207
1.27121 1.01280 0.90158 0.82957 1.48108 1.06549 1.42220 1.22307
0.68951 1.78158 0.99189 1.18776 1.19946 1.21168 0.90785 0.98864
1.00360 1.21212 0.99232 0.94344 0.94100 0.91720 0.92885 0.94462
0.95336 0.93722 0.94070 0.92270 0.95368 0.90902 0.92782 0.93571
0.91842 0.74827 0.82523 0.82652 0.70660 0.83764 0.84545
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.95 10.21 71.98 0.73 -4.22 16
2 C 0.13 5.41 6.44 86.38 0.56 5.97 16
3 N -0.60 -28.96 2.43 -701.98 -1.71 -30.67 16
4 C -0.26 -13.98 9.45 84.04 0.79 -13.19 16
5 H 0.06 2.96 7.92 -2.91 -0.02 2.94 16
6 C -0.04 -2.05 4.95 84.86 0.42 -1.63 16
7 N -0.92 -53.73 11.47 21.65 0.25 -53.48 16
8 Si 0.95 44.40 29.60 68.60 2.03 46.43 16
9 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16
10 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16
11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16
12 C 0.15 6.81 5.33 86.38 0.46 7.27 16
13 C -0.12 -4.43 5.65 30.60 0.17 -4.25 16
14 C 0.13 4.44 5.67 86.38 0.49 4.93 16
15 N -0.71 -19.67 5.50 -466.10 -2.57 -22.24 16
16 C 0.55 16.84 7.77 86.75 0.67 17.51 16
17 O -0.58 -22.49 16.33 -3.95 -0.06 -22.55 16
18 C -0.13 -3.15 5.88 -20.06 -0.12 -3.26 16
19 C -0.08 -1.49 9.52 22.49 0.21 -1.27 16
20 C -0.08 -1.46 9.67 22.44 0.22 -1.24 16
21 C 0.00 -0.04 5.88 -19.99 -0.12 -0.16 16
22 C 0.25 4.93 7.77 137.40 1.07 6.00 16
23 N -0.57 -9.28 10.81 -193.13 -2.09 -11.37 16
24 C 0.28 1.89 13.11 180.37 2.36 4.25 16
25 N -0.47 -3.75 7.44 -60.51 -0.45 -4.20 16
26 H 0.46 -0.09 8.96 -213.10 -1.91 -2.00 16
27 N -0.33 -5.93 12.42 -52.39 -0.65 -6.58 16
28 C -0.09 -1.89 9.66 22.44 0.22 -1.67 16
29 C -0.07 -1.63 9.58 22.49 0.22 -1.42 16
30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16
31 H 0.05 1.64 6.64 -2.39 -0.02 1.62 16
32 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16
33 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16
34 H 0.04 1.69 7.83 -2.39 -0.02 1.67 16
35 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16
36 H 0.06 3.16 5.52 -2.39 -0.01 3.15 16
37 H 0.03 1.23 7.86 -2.38 -0.02 1.21 16
38 H 0.07 2.32 6.64 -2.39 -0.02 2.30 16
39 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16
40 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16
41 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16
42 H 0.41 8.82 6.49 -92.71 -0.60 8.22 16
43 H 0.16 2.12 6.39 -2.91 -0.02 2.10 16
44 H 0.16 2.41 7.82 -2.91 -0.02 2.39 16
45 H 0.28 -1.57 8.06 -2.91 -0.02 -1.60 16
46 H 0.14 2.65 7.82 -2.91 -0.02 2.63 16
47 H 0.14 3.27 7.64 -2.91 -0.02 3.25 16
Total: -1.00 -78.09 396.57 1.62 -76.46
By element:
Atomic # 1 Polarization: 16.07 SS G_CDS: -1.49 Total: 14.58 kcal
Atomic # 6 Polarization: 5.25 SS G_CDS: 8.36 Total: 13.61 kcal
Atomic # 7 Polarization: -121.32 SS G_CDS: -7.21 Total: -128.53 kcal
Atomic # 8 Polarization: -22.49 SS G_CDS: -0.06 Total: -22.55 kcal
Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal
Total: -78.09 1.62 -76.46 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001660609806.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 146.010 kcal
(2) G-P(sol) polarization free energy of solvation -78.085 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.924 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.622 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.463 kcal
(6) G-S(sol) free energy of system = (1) + (5) 69.547 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.36 seconds