Wall clock time and date at job start Sat Apr 11 2020 06:57:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08996 * 109.47368 * 2 1
4 4 N 1.46507 * 109.46622 * 119.99905 * 2 1 3
5 5 C 1.36939 * 119.99613 * 274.99630 * 4 2 1
6 6 H 1.07993 * 120.00339 * 0.02562 * 5 4 2
7 7 C 1.38814 * 119.99506 * 180.02562 * 5 4 2
8 8 N 1.31624 * 119.99675 * 179.97438 * 7 5 4
9 9 Si 1.86799 * 120.00230 * 0.02562 * 7 5 4
10 10 H 1.48506 * 109.47078 * 89.99742 * 9 7 5
11 11 H 1.48500 * 109.47067 * 209.99639 * 9 7 5
12 12 H 1.48495 * 109.47320 * 330.00016 * 9 7 5
13 13 C 1.53003 * 109.47132 * 239.99487 * 2 1 3
14 14 H 1.09006 * 109.49524 * 185.06904 * 13 2 1
15 15 C 1.53038 * 109.49593 * 65.00305 * 13 2 1
16 16 C 1.53040 * 109.53821 * 178.67967 * 15 13 2
17 17 C 1.53192 * 109.31154 * 61.36639 * 16 15 13
18 18 N 1.46931 * 108.77365 * 305.36730 * 17 16 15
19 19 C 1.34783 * 120.62591 * 233.62908 * 18 17 16
20 20 O 1.21704 * 119.99558 * 174.35247 * 19 18 17
21 21 C 1.46668 * 120.00227 * 354.35111 * 19 18 17
22 22 C 1.40336 * 126.55983 * 319.65526 * 21 19 18
23 23 N 1.31002 * 108.77754 * 179.81899 * 22 21 19
24 24 N 1.39895 * 109.55978 * 0.44965 * 23 22 21
25 25 N 1.40024 * 132.52123 * 179.74066 * 24 23 22
26 26 C 1.30839 * 120.65666 * 179.97438 * 25 24 23
27 27 C 1.39729 * 120.97931 * 359.97438 * 26 25 24
28 28 C 1.36559 * 119.93650 * 0.02562 * 27 26 25
29 29 C 1.36758 * 107.87346 * 359.71260 * 24 23 22
30 30 C 1.46920 * 118.74007 * 53.60942 * 18 17 16
31 31 H 1.09000 * 109.47104 * 300.00281 * 1 2 3
32 32 H 1.08998 * 109.46362 * 60.00483 * 1 2 3
33 33 H 1.08996 * 109.47368 * 180.02562 * 1 2 3
34 34 H 0.96993 * 120.00059 * 95.00623 * 4 2 1
35 35 H 0.96994 * 119.99785 * 179.97438 * 8 7 5
36 36 H 1.08999 * 109.46201 * 298.70527 * 15 13 2
37 37 H 1.09002 * 109.46137 * 58.67523 * 15 13 2
38 38 H 1.09001 * 109.49802 * 181.31655 * 16 15 13
39 39 H 1.09007 * 109.50152 * 301.41736 * 16 15 13
40 40 H 1.08999 * 109.58944 * 65.15269 * 17 16 15
41 41 H 1.08999 * 109.59080 * 185.43563 * 17 16 15
42 42 H 1.07997 * 125.61058 * 359.96635 * 22 21 19
43 43 H 1.08000 * 119.51057 * 179.97438 * 26 25 24
44 44 H 1.07997 * 120.02967 * 179.97438 * 27 26 25
45 45 H 1.08005 * 120.44122 * 179.97438 * 28 27 26
46 46 H 1.09008 * 109.58333 * 186.60700 * 30 18 17
47 47 H 1.08993 * 109.58813 * 66.17819 * 30 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0183 -0.6906 1.1963
5 6 2.1490 -0.0074 2.3758
6 1 1.8919 1.0404 2.4244
7 6 2.6121 -0.6617 3.5091
8 7 2.7383 -0.0048 4.6428
9 14 3.0576 -2.4738 3.4250
10 1 4.4905 -2.6150 3.0611
11 1 2.8185 -3.1042 4.7481
12 1 2.2182 -3.1428 2.3989
13 6 2.0401 -0.7214 -1.2492
14 1 3.1263 -0.8009 -1.2053
15 6 1.6356 0.0685 -2.4960
16 6 2.1735 -0.6348 -3.7443
17 6 1.5613 -2.0359 -3.8398
18 7 1.8220 -2.7524 -2.5838
19 6 2.4131 -3.9636 -2.5943
20 8 2.7169 -4.5015 -1.5456
21 6 2.6903 -4.6335 -3.8693
22 6 1.8516 -4.6704 -4.9938
23 7 2.4427 -5.3592 -5.9384
24 7 3.6840 -5.8132 -5.4800
25 7 4.6906 -6.5811 -6.0781
26 6 5.7835 -6.8761 -5.4220
27 6 5.9765 -6.4342 -4.1106
28 6 5.0156 -5.6832 -3.4961
29 6 3.8463 -5.3677 -4.1972
30 6 1.4264 -2.1234 -1.3164
31 1 -0.3633 0.5139 0.8900
32 1 -0.3632 0.5138 -0.8901
33 1 -0.3634 -1.0276 0.0005
34 1 2.2490 -1.6317 1.1527
35 1 3.0616 -0.4621 5.4348
36 1 0.5486 0.1269 -2.5521
37 1 2.0508 1.0747 -2.4391
38 1 1.9050 -0.0594 -4.6302
39 1 3.2585 -0.7157 -3.6773
40 1 0.4859 -1.9548 -3.9978
41 1 2.0131 -2.5762 -4.6717
42 1 0.8798 -4.2052 -5.0690
43 1 6.5477 -7.4700 -5.9012
44 1 6.8843 -6.6871 -3.5831
45 1 5.1561 -5.3377 -2.4825
46 1 1.7911 -2.7223 -0.4818
47 1 0.3400 -2.0494 -1.2686
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001732529525.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:59
Heat of formation + Delta-G solvation = 99.482236 kcal
Electronic energy + Delta-G solvation = -30356.987936 eV
Core-core repulsion = 26349.370737 eV
Total energy + Delta-G solvation = -4007.617198 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-43.06288 -41.17043 -39.26207 -38.82795 -37.03253 -34.71906 -34.32509 -33.34024
-32.39510 -31.92487 -30.85212 -29.39254 -26.79217 -26.16757 -25.83911 -24.69766
-24.21930 -23.35521 -22.15784 -20.96453 -20.02764 -19.60509 -19.20299 -18.35233
-17.81312 -17.39642 -16.96448 -16.79182 -16.58743 -16.10909 -15.96194 -15.69571
-15.27491 -15.13854 -14.96641 -14.61508 -14.40533 -14.29615 -14.08963 -13.95228
-13.70395 -13.58791 -13.56135 -13.07330 -12.96000 -12.69934 -12.61102 -12.34259
-12.05118 -12.01372 -11.88491 -11.84075 -11.73927 -11.59011 -11.40126 -11.26673
-11.01913 -10.98496 -10.76281 -9.68138 -9.30892 -9.27328 -8.03880 -5.34338
-0.86590 -0.10765 0.26839 0.96199 1.33842 1.36128 1.42707 1.74145
1.93889 2.20441 2.44817 3.04963 3.24880 3.28401 3.39524 3.51970
3.54448 3.70335 3.84025 3.92910 3.94811 4.05558 4.10737 4.20557
4.26860 4.30099 4.39396 4.58428 4.62545 4.70041 4.73776 4.81103
4.83368 4.86714 4.92239 5.01209 5.08426 5.09584 5.13397 5.16709
5.24723 5.36377 5.46268 5.54310 5.69227 5.78870 6.10532 6.22085
6.28889 6.38125 7.07978 7.10101 7.86775 8.02805 9.18109
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.013170 B = 0.003249 C = 0.002754
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2125.491834 B = 8616.454071 C =10163.441481
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.176 3.824
3 H 0.049 0.951
4 N -0.756 5.756
5 C -0.218 4.218
6 H 0.064 0.936
7 C -0.060 4.060
8 N -0.983 5.983
9 Si 0.941 3.059
10 H -0.284 1.284
11 H -0.293 1.293
12 H -0.265 1.265
13 C -0.095 4.095
14 H 0.050 0.950
15 C -0.108 4.108
16 C -0.128 4.128
17 C 0.096 3.904
18 N -0.598 5.598
19 C 0.591 3.409
20 O -0.590 6.590
21 C -0.288 4.288
22 C 0.111 3.889
23 N -0.284 5.284
24 N -0.187 5.187
25 N -0.252 5.252
26 C 0.136 3.864
27 C -0.118 4.118
28 C -0.070 4.070
29 C 0.093 3.907
30 C 0.120 3.880
31 H 0.030 0.970
32 H 0.084 0.916
33 H 0.051 0.949
34 H 0.360 0.640
35 H 0.257 0.743
36 H 0.089 0.911
37 H 0.072 0.928
38 H 0.108 0.892
39 H 0.049 0.951
40 H 0.103 0.897
41 H 0.096 0.904
42 H 0.241 0.759
43 H 0.263 0.737
44 H 0.206 0.794
45 H 0.155 0.845
46 H 0.052 0.948
47 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.370 -10.977 -28.804 31.009
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.069 3.931
3 H 0.067 0.933
4 N -0.400 5.400
5 C -0.349 4.349
6 H 0.082 0.918
7 C -0.251 4.251
8 N -0.634 5.634
9 Si 0.770 3.230
10 H -0.210 1.210
11 H -0.219 1.219
12 H -0.190 1.190
13 C -0.116 4.116
14 H 0.069 0.931
15 C -0.145 4.145
16 C -0.166 4.166
17 C -0.026 4.026
18 N -0.329 5.329
19 C 0.381 3.619
20 O -0.471 6.471
21 C -0.305 4.305
22 C -0.070 4.070
23 N -0.109 5.109
24 N -0.052 5.052
25 N -0.064 5.064
26 C -0.056 4.056
27 C -0.143 4.143
28 C -0.098 4.098
29 C -0.034 4.034
30 C -0.003 4.003
31 H 0.049 0.951
32 H 0.103 0.897
33 H 0.070 0.930
34 H 0.193 0.807
35 H 0.066 0.934
36 H 0.108 0.892
37 H 0.091 0.909
38 H 0.127 0.873
39 H 0.068 0.932
40 H 0.121 0.879
41 H 0.114 0.886
42 H 0.257 0.743
43 H 0.279 0.721
44 H 0.223 0.777
45 H 0.173 0.827
46 H 0.071 0.929
47 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges 2.906 -11.660 -30.356 32.648
hybrid contribution 0.752 -0.463 2.747 2.885
sum 3.657 -12.123 -27.609 30.375
Atomic orbital electron populations
1.22398 0.96858 1.01389 1.01299 1.20455 0.93434 0.95014 0.84231
0.93298 1.42994 1.80070 1.09461 1.07446 1.19073 1.34102 0.94513
0.87249 0.91814 1.25310 1.02914 1.01372 0.95499 1.69848 1.55224
1.37258 1.01069 0.85613 0.78420 0.82201 0.76723 1.21022 1.21935
1.19030 1.21657 0.99387 0.94578 0.95938 0.93149 1.21591 1.02559
0.98596 0.91795 1.21902 1.00065 0.95412 0.99189 1.22287 1.02791
0.92865 0.84610 1.48015 1.59188 1.16926 1.08731 1.17330 0.76557
0.80892 0.87166 1.90801 1.54664 1.66752 1.34931 1.19649 0.98392
1.14557 0.97908 1.24758 1.00320 0.94248 0.87634 1.77583 0.89981
1.20443 1.22859 1.51060 1.12838 1.33463 1.07876 1.75923 0.98007
1.08610 1.23870 1.25347 0.92918 0.93978 0.93349 1.22309 1.01368
0.95460 0.95134 1.21244 0.90171 0.96848 1.01499 1.20068 0.97484
0.97545 0.88268 1.21678 1.00200 0.93117 0.85268 0.95064 0.89693
0.92963 0.80672 0.93432 0.89239 0.90933 0.87347 0.93211 0.87855
0.88637 0.74343 0.72115 0.77691 0.82736 0.92933 0.89041
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.05 8.76 71.98 0.63 -4.42 16
2 C 0.18 6.44 2.67 44.99 0.12 6.56 16
3 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16
4 N -0.76 -36.36 4.86 -322.92 -1.57 -37.93 16
5 C -0.22 -12.68 10.41 84.03 0.87 -11.80 16
6 H 0.06 3.98 8.06 -2.91 -0.02 3.96 16
7 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16
8 N -0.98 -64.54 13.97 21.65 0.30 -64.24 16
9 Si 0.94 49.16 27.74 68.60 1.90 51.06 16
10 H -0.28 -14.62 7.11 99.48 0.71 -13.92 16
11 H -0.29 -15.24 7.11 99.48 0.71 -14.53 16
12 H -0.26 -13.28 6.52 99.48 0.65 -12.63 16
13 C -0.10 -2.79 2.27 -10.72 -0.02 -2.82 16
14 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16
15 C -0.11 -2.08 4.89 30.62 0.15 -1.93 16
16 C -0.13 -1.96 6.08 30.67 0.19 -1.77 16
17 C 0.10 1.48 5.46 86.36 0.47 1.95 16
18 N -0.60 -15.05 2.97 -823.61 -2.45 -17.50 16
19 C 0.59 17.93 7.56 86.44 0.65 18.58 16
20 O -0.59 -23.40 16.51 -4.36 -0.07 -23.47 16
21 C -0.29 -7.29 5.23 -19.94 -0.10 -7.39 16
22 C 0.11 2.21 9.56 85.33 0.82 3.02 16
23 N -0.28 -6.89 12.61 -56.63 -0.71 -7.60 16
24 N -0.19 -4.52 5.25 -51.29 -0.27 -4.79 16
25 N -0.25 -4.66 11.96 -57.12 -0.68 -5.34 16
26 C 0.14 1.06 11.28 85.20 0.96 2.02 16
27 C -0.12 -1.01 10.04 22.24 0.22 -0.79 16
28 C -0.07 -1.32 10.09 22.29 0.22 -1.09 16
29 C 0.09 2.28 6.85 39.42 0.27 2.55 16
30 C 0.12 3.58 5.19 86.36 0.45 4.03 16
31 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16
32 H 0.08 1.96 6.60 -2.39 -0.02 1.95 16
33 H 0.05 1.61 6.23 -2.39 -0.01 1.60 16
34 H 0.36 17.59 4.34 -92.71 -0.40 17.19 16
35 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16
36 H 0.09 1.41 6.63 -2.39 -0.02 1.40 16
37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16
38 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16
39 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16
40 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16
41 H 0.10 1.34 4.80 -2.39 -0.01 1.33 16
42 H 0.24 2.66 7.33 -2.91 -0.02 2.64 16
43 H 0.26 -1.12 8.06 -2.91 -0.02 -1.14 16
44 H 0.21 -0.11 8.06 -2.91 -0.02 -0.13 16
45 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16
46 H 0.05 2.03 5.82 -2.38 -0.01 2.02 16
47 H 0.09 2.43 6.06 -2.39 -0.01 2.41 16
Total: -1.00 -90.06 373.73 3.37 -86.69
By element:
Atomic # 1 Polarization: 19.05 SS G_CDS: 0.55 Total: 19.60 kcal
Atomic # 6 Polarization: -2.84 SS G_CDS: 6.37 Total: 3.53 kcal
Atomic # 7 Polarization: -132.03 SS G_CDS: -5.38 Total: -137.41 kcal
Atomic # 8 Polarization: -23.40 SS G_CDS: -0.07 Total: -23.47 kcal
Atomic # 14 Polarization: 49.16 SS G_CDS: 1.90 Total: 51.06 kcal
Total: -90.06 3.37 -86.69 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001732529525.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 186.171 kcal
(2) G-P(sol) polarization free energy of solvation -90.057 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.113 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.689 kcal
(6) G-S(sol) free energy of system = (1) + (5) 99.482 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds