Wall clock time and date at job start Sat Apr 11 2020 06:57:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.35994 * 126.29420 * 2 1
4 4 N 1.30222 * 110.18065 * 180.02562 * 3 2 1
5 5 C 1.35432 * 109.57571 * 0.02562 * 4 3 2
6 6 C 1.39889 * 133.80992 * 180.02562 * 5 4 3
7 7 C 1.36989 * 118.35868 * 179.73740 * 6 5 4
8 8 C 1.39726 * 119.60037 * 0.49945 * 7 6 5
9 9 C 1.47970 * 119.42990 * 179.74315 * 8 7 6
10 10 O 1.21546 * 120.00075 * 359.73127 * 9 8 7
11 11 N 1.34778 * 120.00249 * 179.72877 * 9 8 7
12 12 C 1.46499 * 120.00326 * 180.02562 * 11 9 8
13 13 H 1.09001 * 109.24504 * 324.65895 * 12 11 9
14 14 C 1.54839 * 109.35822 * 205.00159 * 12 11 9
15 15 C 1.50134 * 110.81390 * 200.92577 * 14 12 11
16 16 C 1.52529 * 105.41354 * 97.68270 * 15 14 12
17 17 C 1.46243 * 114.27473 * 270.59047 * 16 15 14
18 18 N 1.50170 * 107.53210 * 58.41347 * 17 16 15
19 19 C 1.36933 * 120.53876 * 109.56279 * 18 17 16
20 20 H 1.08001 * 119.99952 * 156.67778 * 19 18 17
21 21 C 1.38807 * 120.00199 * 336.68084 * 19 18 17
22 22 N 1.31627 * 120.00085 * 340.30112 * 21 19 18
23 23 Si 1.86797 * 120.00165 * 160.30073 * 21 19 18
24 24 H 1.48498 * 109.47188 * 266.02049 * 23 21 19
25 25 H 1.48503 * 109.47057 * 146.01989 * 23 21 19
26 26 H 1.48494 * 109.47116 * 26.02357 * 23 21 19
27 27 C 1.43436 * 118.92429 * 289.83665 * 18 17 16
28 28 N 1.32655 * 121.14066 * 359.46484 * 8 7 6
29 29 C 1.31879 * 121.36547 * 0.27512 * 28 8 7
30 30 H 1.08995 * 109.47084 * 269.94381 * 1 2 3
31 31 H 1.08996 * 109.47074 * 29.94632 * 1 2 3
32 32 H 1.09002 * 109.46821 * 149.94466 * 1 2 3
33 33 H 1.07997 * 124.90942 * 0.06240 * 3 2 1
34 34 H 1.08004 * 120.82229 * 359.97438 * 6 5 4
35 35 H 1.08008 * 120.20160 * 180.23919 * 7 6 5
36 36 H 0.96996 * 119.99753 * 359.97438 * 11 9 8
37 37 H 1.09000 * 109.21078 * 80.58180 * 14 12 11
38 38 H 1.08997 * 109.20792 * 321.26207 * 14 12 11
39 39 H 1.08998 * 110.25063 * 338.70831 * 15 14 12
40 40 H 1.09001 * 110.36989 * 216.71618 * 15 14 12
41 41 H 1.08995 * 108.52238 * 149.35470 * 16 15 14
42 42 H 1.08997 * 108.40305 * 31.74399 * 16 15 14
43 43 H 1.08990 * 109.84758 * 298.90085 * 17 16 15
44 44 H 1.08997 * 109.89745 * 177.94930 * 17 16 15
45 45 H 0.96996 * 120.00447 * 179.97438 * 22 21 19
46 46 H 1.08991 * 108.16323 * 213.03339 * 27 18 17
47 47 H 1.09001 * 108.15805 * 329.60206 * 27 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2700 1.0961 0.0000
4 7 3.5210 0.7347 -0.0005
5 6 3.6028 -0.6172 -0.0015
6 6 4.6689 -1.5229 -0.0019
7 6 4.3844 -2.8629 0.0026
8 6 3.0526 -3.2856 -0.0032
9 6 2.7496 -4.7340 -0.0041
10 8 3.6555 -5.5444 -0.0048
11 7 1.4691 -5.1546 -0.0041
12 6 1.1691 -6.5886 -0.0044
13 1 1.9172 -7.1120 -0.5998
14 6 -0.2319 -6.8196 -0.6217
15 6 -0.7898 -8.1471 -0.1968
16 6 -1.7184 -7.8407 0.9738
17 6 -1.0645 -7.8626 2.2817
18 7 0.0458 -6.8520 2.2493
19 6 -0.0479 -5.6921 2.9710
20 1 0.8474 -5.1596 3.2561
21 6 -1.2936 -5.2006 3.3362
22 7 -2.3717 -5.5960 2.6928
23 14 -1.4402 -3.9780 4.7409
24 1 -1.7270 -4.7061 6.0030
25 1 -2.5446 -3.0269 4.4562
26 1 -0.1656 -3.2290 4.8802
27 6 1.2034 -7.1187 1.4455
28 7 2.0552 -2.4111 -0.0023
29 6 2.2815 -1.1118 -0.0015
30 1 -0.3633 -0.0010 1.0276
31 1 -0.3633 0.8904 -0.5130
32 1 -0.3633 -0.8895 -0.5147
33 1 1.9220 2.1185 0.0010
34 1 5.6912 -1.1743 -0.0019
35 1 5.1846 -3.5882 0.0063
36 1 0.7463 -4.5079 -0.0031
37 1 -0.1535 -6.7949 -1.7086
38 1 -0.9038 -6.0267 -0.2932
39 1 0.0146 -8.8094 0.1231
40 1 -1.3500 -8.6023 -1.0136
41 1 -2.5246 -8.5743 0.9774
42 1 -2.1517 -6.8525 0.8198
43 1 -0.6564 -8.8546 2.4748
44 1 -1.7815 -7.5998 3.0594
45 1 -3.2422 -5.2528 2.9482
46 1 2.0696 -6.6811 1.9415
47 1 1.3496 -8.1982 1.4080
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001034397081.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:44
Heat of formation + Delta-G solvation = 89.156899 kcal
Electronic energy + Delta-G solvation = -30988.747656 eV
Core-core repulsion = 26980.682717 eV
Total energy + Delta-G solvation = -4008.064939 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 1.47 seconds
Orbital eigenvalues (eV)
-42.44080 -39.72973 -38.24050 -37.27706 -34.68043 -34.20028 -33.11674 -31.95989
-31.02367 -30.41020 -29.34823 -27.28848 -26.18219 -25.04266 -23.93801 -23.18622
-22.71525 -20.96230 -20.64150 -19.69874 -19.10563 -17.92682 -17.73151 -17.02620
-16.62323 -16.25549 -15.52065 -15.08234 -14.98507 -14.72906 -14.56856 -14.25835
-13.88791 -13.67735 -13.52823 -13.28075 -13.21543 -12.97616 -12.73056 -12.37789
-12.23580 -12.14573 -11.76661 -11.53826 -11.29259 -11.09798 -10.91649 -10.80985
-10.78048 -10.47998 -10.11313 -9.96473 -9.83578 -9.68204 -9.42371 -9.24441
-9.16405 -8.82293 -8.67461 -8.53537 -8.27465 -6.69334 -5.80954 -3.18500
0.45898 1.20334 2.17758 2.47489 3.16940 3.33408 3.40993 3.44067
3.56454 3.92849 4.02663 4.11985 4.43456 4.48434 4.72601 4.88247
5.00811 5.04234 5.22615 5.31677 5.39372 5.39940 5.48961 5.50846
5.66433 5.81454 5.95201 6.02161 6.07427 6.14051 6.23489 6.27316
6.46318 6.49714 6.54309 6.63281 6.73288 6.87284 6.92861 6.98424
7.04509 7.22619 7.27393 7.53152 7.61490 7.64799 7.75066 7.99184
8.14563 8.41812 8.69148 9.18655 9.85760 10.38769 11.25685
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.010550 B = 0.004273 C = 0.003495
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2653.501792 B = 6550.848548 C = 8009.260517
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.078 3.922
2 N -0.482 5.482
3 C 0.276 3.724
4 N -0.494 5.494
5 C 0.017 3.983
6 C -0.031 4.031
7 C -0.127 4.127
8 C 0.129 3.871
9 C 0.567 3.433
10 O -0.546 6.546
11 N -0.676 5.676
12 C 0.114 3.886
13 H 0.074 0.926
14 C -0.110 4.110
15 C -0.112 4.112
16 C -0.130 4.130
17 C 0.164 3.836
18 N -0.582 5.582
19 C -0.235 4.235
20 H 0.063 0.937
21 C 0.003 3.997
22 N -0.899 5.899
23 Si 0.894 3.106
24 H -0.289 1.289
25 H -0.294 1.294
26 H -0.283 1.283
27 C 0.150 3.850
28 N -0.445 5.445
29 C 0.236 3.764
30 H 0.080 0.920
31 H 0.089 0.911
32 H 0.093 0.907
33 H 0.222 0.778
34 H 0.146 0.854
35 H 0.156 0.844
36 H 0.410 0.590
37 H 0.039 0.961
38 H 0.080 0.920
39 H 0.058 0.942
40 H 0.049 0.951
41 H 0.024 0.976
42 H 0.100 0.900
43 H 0.006 0.994
44 H 0.089 0.911
45 H 0.251 0.749
46 H 0.038 0.962
47 H 0.038 0.962
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.595 8.820 -8.382 13.006
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 N -0.174 5.174
3 C -0.010 4.010
4 N -0.213 5.213
5 C -0.105 4.105
6 C -0.058 4.058
7 C -0.151 4.151
8 C -0.020 4.020
9 C 0.351 3.649
10 O -0.425 6.425
11 N -0.324 5.324
12 C 0.007 3.993
13 H 0.092 0.908
14 C -0.148 4.148
15 C -0.150 4.150
16 C -0.169 4.169
17 C 0.041 3.959
18 N -0.303 5.303
19 C -0.364 4.364
20 H 0.081 0.919
21 C -0.195 4.195
22 N -0.545 5.545
23 Si 0.725 3.275
24 H -0.217 1.217
25 H -0.221 1.221
26 H -0.208 1.208
27 C 0.020 3.980
28 N -0.160 5.160
29 C -0.001 4.001
30 H 0.099 0.901
31 H 0.108 0.892
32 H 0.112 0.888
33 H 0.238 0.762
34 H 0.164 0.836
35 H 0.174 0.826
36 H 0.246 0.754
37 H 0.058 0.942
38 H 0.098 0.902
39 H 0.076 0.924
40 H 0.068 0.932
41 H 0.043 0.957
42 H 0.119 0.881
43 H 0.024 0.976
44 H 0.107 0.893
45 H 0.061 0.939
46 H 0.056 0.944
47 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges 4.674 8.530 -8.314 12.795
hybrid contribution -0.665 1.066 0.739 1.458
sum 4.009 9.596 -7.575 12.866
Atomic orbital electron populations
1.22102 0.74825 1.05028 1.04353 1.45067 1.07965 1.04471 1.59917
1.25449 0.85014 0.93142 0.97394 1.70417 1.18172 1.10604 1.22132
1.19833 0.93373 0.91417 1.05867 1.20405 0.98252 0.90712 0.96449
1.21569 0.97299 0.95953 1.00243 1.21114 0.89031 0.93141 0.98726
1.17622 0.83807 0.85713 0.77775 1.90749 1.45859 1.53793 1.52060
1.45907 1.06884 1.09303 1.70314 1.22822 0.96043 0.79770 1.00701
0.90763 1.21666 0.96163 0.99344 0.97596 1.20975 0.99330 0.96154
0.98529 1.21009 0.96972 1.03307 0.95614 1.20175 0.90453 0.88125
0.97130 1.44271 1.17973 1.18899 1.49131 1.19157 0.91785 1.00264
1.25239 0.91882 1.24824 0.96235 0.98613 0.99818 1.69972 0.97894
1.46996 1.39645 0.86396 0.76983 0.80840 0.83288 1.21651 1.22075
1.20833 1.20714 0.91307 0.96925 0.89056 1.66225 1.36872 0.99777
1.13138 1.18867 0.89117 0.87731 1.04364 0.90127 0.89241 0.88791
0.76206 0.83604 0.82589 0.75359 0.94244 0.90171 0.92383 0.93244
0.95689 0.88141 0.97635 0.89322 0.93911 0.94371 0.94353
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.69 11.19 59.84 0.67 1.36 16
2 N -0.48 -5.73 3.20 -124.98 -0.40 -6.13 16
3 C 0.28 2.79 12.49 -89.73 -1.12 1.67 16
4 N -0.49 -6.61 11.27 -11.93 -0.13 -6.74 16
5 C 0.02 0.25 7.25 -84.58 -0.61 -0.37 16
6 C -0.03 -0.41 10.16 -39.42 -0.40 -0.81 16
7 C -0.13 -1.84 9.55 -39.48 -0.38 -2.22 16
8 C 0.13 2.21 6.74 -82.97 -0.56 1.65 16
9 C 0.57 10.72 7.62 -12.27 -0.09 10.62 16
10 O -0.55 -11.19 15.95 5.33 0.08 -11.11 16
11 N -0.68 -12.82 5.07 -53.05 -0.27 -13.09 16
12 C 0.11 2.16 2.91 -66.22 -0.19 1.97 16
13 H 0.07 1.38 7.57 -51.93 -0.39 0.99 16
14 C -0.11 -1.97 5.23 -27.19 -0.14 -2.11 16
15 C -0.11 -1.96 5.76 -28.40 -0.16 -2.12 16
16 C -0.13 -2.66 5.02 -30.18 -0.15 -2.81 16
17 C 0.16 3.71 5.25 -5.20 -0.03 3.68 16
18 N -0.58 -13.74 2.61 -175.41 -0.46 -14.19 16
19 C -0.23 -6.11 9.62 -15.06 -0.14 -6.26 16
20 H 0.06 1.73 7.89 -52.49 -0.41 1.32 16
21 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16
22 N -0.90 -23.59 9.43 55.49 0.52 -23.06 16
23 Si 0.89 21.23 29.60 -169.99 -5.03 16.20 16
24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16
25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
27 C 0.15 3.19 4.75 -4.92 -0.02 3.17 16
28 N -0.44 -7.59 9.54 -8.83 -0.08 -7.67 16
29 C 0.24 3.65 8.01 -155.74 -1.25 2.40 16
30 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16
31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16
32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16
33 H 0.22 1.01 8.06 -52.49 -0.42 0.59 16
34 H 0.15 1.50 8.06 -52.48 -0.42 1.08 16
35 H 0.16 2.03 7.61 -52.48 -0.40 1.63 16
36 H 0.41 7.96 7.75 -40.82 -0.32 7.64 16
37 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16
38 H 0.08 1.65 6.58 -51.93 -0.34 1.31 16
39 H 0.06 1.00 6.28 -51.93 -0.33 0.68 16
40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
42 H 0.10 2.35 5.28 -51.93 -0.27 2.07 16
43 H 0.01 0.12 8.13 -51.93 -0.42 -0.30 16
44 H 0.09 2.24 6.06 -51.93 -0.31 1.92 16
45 H 0.25 6.51 8.31 -40.82 -0.34 6.17 16
46 H 0.04 0.88 7.80 -51.93 -0.41 0.48 16
47 H 0.04 0.77 6.89 -51.93 -0.36 0.41 16
LS Contribution 375.57 15.07 5.66 5.66
Total: -1.00 -31.23 375.57 -11.26 -42.49
By element:
Atomic # 1 Polarization: 14.33 SS G_CDS: -6.48 Total: 7.85 kcal
Atomic # 6 Polarization: 14.48 SS G_CDS: -4.67 Total: 9.80 kcal
Atomic # 7 Polarization: -70.07 SS G_CDS: -0.82 Total: -70.89 kcal
Atomic # 8 Polarization: -11.19 SS G_CDS: 0.08 Total: -11.11 kcal
Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal
Total LS contribution 5.66 Total: 5.66 kcal
Total: -31.23 -11.26 -42.49 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001034397081.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 131.648 kcal
(2) G-P(sol) polarization free energy of solvation -31.227 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.421 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.264 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal
(6) G-S(sol) free energy of system = (1) + (5) 89.157 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.48 seconds