Wall clock time and date at job start Sat Apr 11 2020 06:57:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.35994 * 126.29420 * 2 1
4 4 N 1.30222 * 110.18065 * 180.02562 * 3 2 1
5 5 C 1.35432 * 109.57571 * 0.02562 * 4 3 2
6 6 C 1.39889 * 133.80992 * 180.02562 * 5 4 3
7 7 C 1.36989 * 118.35868 * 179.73740 * 6 5 4
8 8 C 1.39726 * 119.60037 * 0.49945 * 7 6 5
9 9 C 1.47970 * 119.42990 * 179.74315 * 8 7 6
10 10 O 1.21546 * 120.00075 * 359.73127 * 9 8 7
11 11 N 1.34778 * 120.00249 * 179.72877 * 9 8 7
12 12 C 1.46499 * 120.00326 * 180.02562 * 11 9 8
13 13 H 1.09001 * 109.24504 * 324.65895 * 12 11 9
14 14 C 1.54839 * 109.35822 * 205.00159 * 12 11 9
15 15 C 1.50134 * 110.81390 * 200.92577 * 14 12 11
16 16 C 1.52529 * 105.41354 * 97.68270 * 15 14 12
17 17 C 1.46243 * 114.27473 * 270.59047 * 16 15 14
18 18 N 1.50170 * 107.53210 * 58.41347 * 17 16 15
19 19 C 1.36933 * 120.53876 * 109.56279 * 18 17 16
20 20 H 1.08001 * 119.99952 * 156.67778 * 19 18 17
21 21 C 1.38807 * 120.00199 * 336.68084 * 19 18 17
22 22 N 1.31627 * 120.00085 * 340.30112 * 21 19 18
23 23 Si 1.86797 * 120.00165 * 160.30073 * 21 19 18
24 24 H 1.48498 * 109.47188 * 266.02049 * 23 21 19
25 25 H 1.48503 * 109.47057 * 146.01989 * 23 21 19
26 26 H 1.48494 * 109.47116 * 26.02357 * 23 21 19
27 27 C 1.43436 * 118.92429 * 289.83665 * 18 17 16
28 28 N 1.32655 * 121.14066 * 359.46484 * 8 7 6
29 29 C 1.31879 * 121.36547 * 0.27512 * 28 8 7
30 30 H 1.08995 * 109.47084 * 269.94381 * 1 2 3
31 31 H 1.08996 * 109.47074 * 29.94632 * 1 2 3
32 32 H 1.09002 * 109.46821 * 149.94466 * 1 2 3
33 33 H 1.07997 * 124.90942 * 0.06240 * 3 2 1
34 34 H 1.08004 * 120.82229 * 359.97438 * 6 5 4
35 35 H 1.08008 * 120.20160 * 180.23919 * 7 6 5
36 36 H 0.96996 * 119.99753 * 359.97438 * 11 9 8
37 37 H 1.09000 * 109.21078 * 80.58180 * 14 12 11
38 38 H 1.08997 * 109.20792 * 321.26207 * 14 12 11
39 39 H 1.08998 * 110.25063 * 338.70831 * 15 14 12
40 40 H 1.09001 * 110.36989 * 216.71618 * 15 14 12
41 41 H 1.08995 * 108.52238 * 149.35470 * 16 15 14
42 42 H 1.08997 * 108.40305 * 31.74399 * 16 15 14
43 43 H 1.08990 * 109.84758 * 298.90085 * 17 16 15
44 44 H 1.08997 * 109.89745 * 177.94930 * 17 16 15
45 45 H 0.96996 * 120.00447 * 179.97438 * 22 21 19
46 46 H 1.08991 * 108.16323 * 213.03339 * 27 18 17
47 47 H 1.09001 * 108.15805 * 329.60206 * 27 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2700 1.0961 0.0000
4 7 3.5210 0.7347 -0.0005
5 6 3.6028 -0.6172 -0.0015
6 6 4.6689 -1.5229 -0.0019
7 6 4.3844 -2.8629 0.0026
8 6 3.0526 -3.2856 -0.0032
9 6 2.7496 -4.7340 -0.0041
10 8 3.6555 -5.5444 -0.0048
11 7 1.4691 -5.1546 -0.0041
12 6 1.1691 -6.5886 -0.0044
13 1 1.9172 -7.1120 -0.5998
14 6 -0.2319 -6.8196 -0.6217
15 6 -0.7898 -8.1471 -0.1968
16 6 -1.7184 -7.8407 0.9738
17 6 -1.0645 -7.8626 2.2817
18 7 0.0458 -6.8520 2.2493
19 6 -0.0479 -5.6921 2.9710
20 1 0.8474 -5.1596 3.2561
21 6 -1.2936 -5.2006 3.3362
22 7 -2.3717 -5.5960 2.6928
23 14 -1.4402 -3.9780 4.7409
24 1 -1.7270 -4.7061 6.0030
25 1 -2.5446 -3.0269 4.4562
26 1 -0.1656 -3.2290 4.8802
27 6 1.2034 -7.1187 1.4455
28 7 2.0552 -2.4111 -0.0023
29 6 2.2815 -1.1118 -0.0015
30 1 -0.3633 -0.0010 1.0276
31 1 -0.3633 0.8904 -0.5130
32 1 -0.3633 -0.8895 -0.5147
33 1 1.9220 2.1185 0.0010
34 1 5.6912 -1.1743 -0.0019
35 1 5.1846 -3.5882 0.0063
36 1 0.7463 -4.5079 -0.0031
37 1 -0.1535 -6.7949 -1.7086
38 1 -0.9038 -6.0267 -0.2932
39 1 0.0146 -8.8094 0.1231
40 1 -1.3500 -8.6023 -1.0136
41 1 -2.5246 -8.5743 0.9774
42 1 -2.1517 -6.8525 0.8198
43 1 -0.6564 -8.8546 2.4748
44 1 -1.7815 -7.5998 3.0594
45 1 -3.2422 -5.2528 2.9482
46 1 2.0696 -6.6811 1.9415
47 1 1.3496 -8.1982 1.4080
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001034397081.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:43
Heat of formation + Delta-G solvation = 71.320248 kcal
Electronic energy + Delta-G solvation = -30989.521111 eV
Core-core repulsion = 26980.682717 eV
Total energy + Delta-G solvation = -4008.838394 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 1.24 seconds
Orbital eigenvalues (eV)
-43.43700 -41.14087 -39.66229 -38.70201 -35.92848 -35.57155 -34.78250 -33.07511
-32.84341 -31.86088 -30.67150 -28.10997 -27.98435 -26.38137 -25.33735 -24.75896
-24.04051 -22.14604 -21.89361 -21.23731 -20.74145 -19.08922 -18.91109 -18.54519
-18.08004 -17.24889 -17.07508 -16.80607 -16.36856 -16.07510 -15.78367 -15.63490
-15.50535 -15.05982 -15.02856 -14.39558 -14.35503 -14.04725 -14.03226 -13.75129
-13.51612 -13.42859 -13.37196 -13.25159 -13.16872 -12.69879 -12.40326 -12.34513
-12.13332 -11.92943 -11.89640 -11.81341 -11.30742 -11.21695 -11.11123 -10.92139
-10.47247 -10.35396 -10.02789 -9.84018 -9.61548 -8.59364 -7.81342 -5.20178
-0.65036 0.10424 1.27455 1.39112 1.42000 1.44590 1.50203 1.94851
2.21312 2.51502 2.78856 2.87497 3.21389 3.30645 3.50390 3.61562
3.75309 3.89002 3.97084 4.09857 4.17488 4.21327 4.36531 4.43841
4.47119 4.54799 4.60487 4.69168 4.70055 4.79837 4.85769 4.91446
4.96378 5.07039 5.09676 5.22492 5.32650 5.34992 5.41785 5.46355
5.60752 5.67325 5.71463 5.81806 5.88613 6.24569 6.40660 6.46194
6.58366 6.70678 7.19182 7.21035 7.92245 8.41901 9.21906
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.010550 B = 0.004273 C = 0.003495
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2653.501792 B = 6550.848548 C = 8009.260517
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.075 3.925
2 N -0.485 5.485
3 C 0.303 3.697
4 N -0.523 5.523
5 C 0.011 3.989
6 C -0.028 4.028
7 C -0.125 4.125
8 C 0.097 3.903
9 C 0.567 3.433
10 O -0.568 6.568
11 N -0.679 5.679
12 C 0.120 3.880
13 H 0.083 0.917
14 C -0.099 4.099
15 C -0.103 4.103
16 C -0.123 4.123
17 C 0.167 3.833
18 N -0.592 5.592
19 C -0.241 4.241
20 H 0.041 0.959
21 C -0.030 4.030
22 N -0.906 5.906
23 Si 0.943 3.057
24 H -0.292 1.292
25 H -0.290 1.290
26 H -0.290 1.290
27 C 0.153 3.847
28 N -0.463 5.463
29 C 0.206 3.794
30 H 0.076 0.924
31 H 0.137 0.863
32 H 0.074 0.926
33 H 0.279 0.721
34 H 0.177 0.823
35 H 0.166 0.834
36 H 0.407 0.593
37 H 0.064 0.936
38 H 0.051 0.949
39 H 0.064 0.936
40 H 0.078 0.922
41 H 0.037 0.963
42 H 0.070 0.930
43 H 0.021 0.979
44 H 0.058 0.942
45 H 0.248 0.752
46 H 0.011 0.989
47 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.526 10.373 -9.466 14.754
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 N -0.177 5.177
3 C 0.018 3.982
4 N -0.243 5.243
5 C -0.111 4.111
6 C -0.055 4.055
7 C -0.149 4.149
8 C -0.050 4.050
9 C 0.352 3.648
10 O -0.448 6.448
11 N -0.326 5.326
12 C 0.013 3.987
13 H 0.101 0.899
14 C -0.137 4.137
15 C -0.141 4.141
16 C -0.161 4.161
17 C 0.044 3.956
18 N -0.313 5.313
19 C -0.371 4.371
20 H 0.059 0.941
21 C -0.227 4.227
22 N -0.552 5.552
23 Si 0.774 3.226
24 H -0.219 1.219
25 H -0.216 1.216
26 H -0.216 1.216
27 C 0.024 3.976
28 N -0.179 5.179
29 C -0.032 4.032
30 H 0.095 0.905
31 H 0.155 0.845
32 H 0.093 0.907
33 H 0.294 0.706
34 H 0.194 0.806
35 H 0.184 0.816
36 H 0.242 0.758
37 H 0.082 0.918
38 H 0.070 0.930
39 H 0.083 0.917
40 H 0.096 0.904
41 H 0.056 0.944
42 H 0.089 0.911
43 H 0.039 0.961
44 H 0.076 0.924
45 H 0.057 0.943
46 H 0.029 0.971
47 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 4.590 10.069 -9.408 14.525
hybrid contribution -0.650 0.718 1.099 1.465
sum 3.941 10.788 -8.309 14.176
Atomic orbital electron populations
1.22318 0.73167 1.06491 1.04569 1.45421 1.09052 1.03772 1.59438
1.26664 0.83867 0.94568 0.93100 1.70468 1.20026 1.09488 1.24289
1.20211 0.93471 0.92452 1.04960 1.20719 0.99545 0.89931 0.95350
1.21661 0.96394 0.96881 0.99935 1.20912 0.90257 0.92157 1.01723
1.17945 0.83371 0.86703 0.76796 1.90711 1.46249 1.54747 1.53118
1.45917 1.06972 1.09194 1.70540 1.22691 0.97115 0.79929 0.99007
0.89891 1.21552 0.94508 0.98736 0.98904 1.20942 0.99085 0.95984
0.98082 1.20828 0.97681 1.02012 0.95602 1.20126 0.89700 0.88239
0.97532 1.44311 1.18793 1.18421 1.49790 1.19032 0.91055 1.01045
1.25995 0.94131 1.25257 0.96136 1.00044 1.01237 1.70093 0.97726
1.47456 1.39935 0.85643 0.76400 0.79355 0.81207 1.21894 1.21618
1.21621 1.20695 0.89344 0.97607 0.89958 1.66086 1.37338 1.00854
1.13590 1.19269 0.90659 0.87910 1.05388 0.90488 0.84485 0.90676
0.70596 0.80573 0.81635 0.75806 0.91766 0.93036 0.91692 0.90358
0.94439 0.91106 0.96098 0.92381 0.94287 0.97106 0.92913
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.18 11.19 127.77 1.43 2.61 16
2 N -0.49 -10.64 3.20 -549.32 -1.76 -12.40 16
3 C 0.30 5.10 12.49 180.04 2.25 7.34 16
4 N -0.52 -12.80 11.27 -191.66 -2.16 -14.96 16
5 C 0.01 0.31 7.25 39.69 0.29 0.60 16
6 C -0.03 -0.73 10.16 22.38 0.23 -0.50 16
7 C -0.13 -3.66 9.55 22.34 0.21 -3.45 16
8 C 0.10 3.45 6.74 41.96 0.28 3.73 16
9 C 0.57 22.23 7.62 86.82 0.66 22.89 16
10 O -0.57 -23.95 15.95 -3.86 -0.06 -24.01 16
11 N -0.68 -26.63 5.07 -440.04 -2.23 -28.86 16
12 C 0.12 4.55 2.91 46.10 0.13 4.68 16
13 H 0.08 3.03 7.57 -2.39 -0.02 3.01 16
14 C -0.10 -3.46 5.23 30.30 0.16 -3.31 16
15 C -0.10 -3.41 5.76 29.51 0.17 -3.24 16
16 C -0.12 -4.92 5.02 28.36 0.14 -4.78 16
17 C 0.17 7.55 5.25 83.58 0.44 7.99 16
18 N -0.59 -28.50 2.61 -708.86 -1.85 -30.35 16
19 C -0.24 -12.95 9.62 84.03 0.81 -12.14 16
20 H 0.04 2.34 7.89 -2.91 -0.02 2.32 16
21 C -0.03 -1.60 4.91 84.86 0.42 -1.19 16
22 N -0.91 -48.42 9.43 21.65 0.20 -48.22 16
23 Si 0.94 44.49 29.60 68.60 2.03 46.52 16
24 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16
25 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16
26 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16
27 C 0.15 6.61 4.75 87.42 0.41 7.02 16
28 N -0.46 -16.30 9.54 -181.84 -1.74 -18.03 16
29 C 0.21 6.32 8.01 134.06 1.07 7.39 16
30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16
31 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16
32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16
33 H 0.28 0.98 8.06 -2.91 -0.02 0.95 16
34 H 0.18 3.30 8.06 -2.91 -0.02 3.28 16
35 H 0.17 4.37 7.61 -2.91 -0.02 4.35 16
36 H 0.41 16.53 7.75 -92.71 -0.72 15.82 16
37 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16
38 H 0.05 2.14 6.58 -2.39 -0.02 2.12 16
39 H 0.06 2.08 6.28 -2.39 -0.02 2.07 16
40 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16
41 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16
42 H 0.07 3.33 5.28 -2.39 -0.01 3.31 16
43 H 0.02 0.87 8.13 -2.39 -0.02 0.85 16
44 H 0.06 2.98 6.06 -2.39 -0.01 2.97 16
45 H 0.25 13.02 8.31 -92.71 -0.77 12.25 16
46 H 0.01 0.51 7.80 -2.39 -0.02 0.49 16
47 H 0.05 2.09 6.89 -2.39 -0.02 2.07 16
Total: -1.00 -70.66 375.57 1.84 -68.82
By element:
Atomic # 1 Polarization: 25.53 SS G_CDS: 0.29 Total: 25.83 kcal
Atomic # 6 Polarization: 26.56 SS G_CDS: 9.11 Total: 35.67 kcal
Atomic # 7 Polarization: -143.29 SS G_CDS: -9.53 Total: -152.82 kcal
Atomic # 8 Polarization: -23.95 SS G_CDS: -0.06 Total: -24.01 kcal
Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal
Total: -70.66 1.84 -68.82 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001034397081.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 140.140 kcal
(2) G-P(sol) polarization free energy of solvation -70.659 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.481 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.820 kcal
(6) G-S(sol) free energy of system = (1) + (5) 71.320 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.24 seconds