Wall clock time and date at job start Sat Apr 11 2020 06:57:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46507 * 1
3 3 C 1.36935 * 120.00042 * 2 1
4 4 H 1.07994 * 119.99961 * 204.09698 * 3 2 1
5 5 C 1.38818 * 119.99829 * 24.10086 * 3 2 1
6 6 N 1.31613 * 119.99921 * 11.14900 * 5 3 2
7 7 Si 1.86800 * 119.99738 * 191.14544 * 5 3 2
8 8 H 1.48498 * 109.46747 * 60.00075 * 7 5 3
9 9 H 1.48502 * 109.46816 * 179.97438 * 7 5 3
10 10 H 1.48500 * 109.47230 * 300.00029 * 7 5 3
11 11 C 1.46504 * 119.99897 * 180.02562 * 2 1 3
12 12 C 1.52998 * 109.47465 * 89.99790 * 11 2 1
13 13 C 1.52990 * 109.47079 * 180.02562 * 12 11 2
14 14 N 1.46503 * 109.47210 * 180.02562 * 13 12 11
15 15 C 1.46501 * 119.99757 * 270.00083 * 14 13 12
16 16 C 1.34769 * 120.00523 * 89.99320 * 14 13 12
17 17 O 1.21580 * 119.99646 * 4.78119 * 16 14 13
18 18 C 1.47667 * 120.00516 * 184.77231 * 16 14 13
19 19 C 1.40237 * 120.49404 * 320.81295 * 18 16 14
20 20 C 1.38015 * 118.35248 * 179.97438 * 19 18 16
21 21 C 1.39160 * 119.25887 * 359.97438 * 20 19 18
22 22 N 1.39492 * 119.52734 * 179.97438 * 21 20 19
23 23 C 1.37230 * 126.49451 * 185.28386 * 22 21 20
24 24 C 1.34590 * 106.82320 * 180.11592 * 23 22 21
25 25 N 1.34172 * 108.23508 * 359.62134 * 24 23 22
26 26 C 1.30453 * 109.38778 * 0.24050 * 25 24 23
27 27 N 1.32431 * 120.94022 * 0.26147 * 21 20 19
28 28 C 1.31634 * 121.80006 * 359.46642 * 27 21 20
29 29 H 1.08997 * 109.46484 * 267.67534 * 1 2 3
30 30 H 1.08996 * 109.46588 * 27.67427 * 1 2 3
31 31 H 1.09003 * 109.46904 * 147.67664 * 1 2 3
32 32 H 0.96997 * 119.99766 * 180.02562 * 6 5 3
33 33 H 1.09001 * 109.46828 * 329.99601 * 11 2 1
34 34 H 1.09000 * 109.46536 * 209.99996 * 11 2 1
35 35 H 1.09008 * 109.46722 * 59.99726 * 12 11 2
36 36 H 1.08998 * 109.47070 * 300.00358 * 12 11 2
37 37 H 1.08997 * 109.47777 * 59.99801 * 13 12 11
38 38 H 1.09002 * 109.47467 * 299.99577 * 13 12 11
39 39 H 1.09000 * 109.46981 * 266.28613 * 15 14 13
40 40 H 1.09010 * 109.47242 * 26.28413 * 15 14 13
41 41 H 1.09000 * 109.47228 * 146.28322 * 15 14 13
42 42 H 1.07998 * 120.82419 * 359.94722 * 19 18 16
43 43 H 1.08007 * 120.36954 * 179.97438 * 20 19 18
44 44 H 1.07995 * 126.58795 * 359.97438 * 23 22 21
45 45 H 1.08002 * 125.88254 * 179.88316 * 24 23 22
46 46 H 1.07999 * 125.72773 * 180.02562 * 26 25 24
47 47 H 1.08005 * 119.68111 * 180.24612 * 28 27 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1591 1.2266 -0.3818
5 6 1.5464 2.3357 0.4909
6 7 0.4121 2.2522 1.1531
7 14 2.3446 4.0013 0.2117
8 1 2.4652 4.2541 -1.2467
9 1 1.5077 5.0610 0.8297
10 1 3.6949 4.0130 0.8295
11 6 2.1976 -1.2688 -0.0006
12 6 2.4525 -1.7099 -1.4432
13 6 3.2169 -3.0352 -1.4437
14 7 3.4616 -3.4573 -2.8251
15 6 2.4849 -4.3022 -3.5167
16 6 4.5851 -3.0683 -3.4597
17 8 5.4359 -2.4405 -2.8595
18 6 4.7829 -3.4046 -4.8839
19 6 4.3891 -4.6554 -5.3810
20 6 4.5943 -4.9229 -6.7194
21 6 5.1797 -3.9511 -7.5253
22 7 5.3901 -4.2157 -8.8786
23 6 6.0424 -3.4083 -9.7763
24 6 6.0140 -4.0427 -10.9630
25 7 5.3716 -5.2092 -10.8001
26 6 4.9929 -5.3253 -9.5572
27 7 5.5449 -2.7808 -7.0245
28 6 5.3631 -2.4822 -5.7554
29 1 -0.3632 -0.0417 1.0268
30 1 -0.3632 0.9101 -0.4773
31 1 -0.3633 -0.8685 -0.5495
32 1 -0.0097 3.0556 1.4958
33 1 1.6085 -2.0286 0.5130
34 1 3.1500 -1.1386 0.5133
35 1 3.0416 -0.9500 -1.9567
36 1 1.5001 -1.8400 -1.9571
37 1 2.6276 -3.7948 -0.9303
38 1 4.1694 -2.9055 -0.9298
39 1 2.7640 -5.3495 -3.4010
40 1 1.4959 -4.1402 -3.0877
41 1 2.4679 -4.0455 -4.5759
42 1 3.9369 -5.3912 -4.7326
43 1 4.3037 -5.8758 -7.1366
44 1 6.4902 -2.4473 -9.5706
45 1 6.4392 -3.6777 -11.8862
46 1 4.4547 -6.1622 -9.1374
47 1 5.6705 -1.5157 -5.3841
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001280848398.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:51
Heat of formation + Delta-G solvation = 92.076221 kcal
Electronic energy + Delta-G solvation = -28658.677006 eV
Core-core repulsion = 24650.738659 eV
Total energy + Delta-G solvation = -4007.938347 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-43.43979 -41.82777 -40.29495 -37.94929 -36.84817 -35.46341 -34.43768 -33.69993
-32.13050 -31.21234 -30.40690 -28.20264 -27.91011 -27.24083 -25.54093 -25.09194
-23.84195 -22.41245 -22.02894 -21.91507 -20.81779 -19.91636 -18.79315 -18.46443
-17.85028 -17.28294 -16.88574 -16.75457 -16.44715 -16.27037 -15.94633 -15.64527
-15.15492 -15.02063 -14.93094 -14.88617 -14.66723 -14.58578 -14.49730 -14.38313
-13.90509 -13.71559 -13.35370 -13.03464 -12.95603 -12.74438 -12.58346 -12.49994
-12.26022 -12.12699 -11.91230 -11.88834 -11.41342 -11.36023 -11.28392 -11.11469
-10.81913 -10.64301 -9.99323 -9.75186 -9.56221 -8.74323 -7.87291 -5.34522
-0.77704 -0.05233 0.95657 1.30102 1.42482 1.44231 1.51263 1.59155
1.94105 2.04027 2.48274 2.55541 3.01047 3.26786 3.31492 3.42281
3.60023 3.64000 3.70517 3.82931 4.01919 4.13148 4.22244 4.33504
4.40136 4.43648 4.50129 4.54360 4.60271 4.66871 4.69267 4.76083
4.76954 4.87932 4.92489 4.94856 5.04654 5.14437 5.26246 5.28183
5.47855 5.55619 5.59544 5.59955 5.69402 6.00572 6.26629 6.33029
6.52522 6.88052 6.99946 7.14539 7.87644 8.29390 9.16936
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.015920 B = 0.002028 C = 0.001899
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1758.405854 B =13803.715488 C =14743.853819
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.178 3.822
2 N -0.623 5.623
3 C -0.262 4.262
4 H 0.059 0.941
5 C -0.053 4.053
6 N -0.938 5.938
7 Si 0.965 3.035
8 H -0.281 1.281
9 H -0.289 1.289
10 H -0.277 1.277
11 C 0.151 3.849
12 C -0.131 4.131
13 C 0.124 3.876
14 N -0.603 5.603
15 C 0.058 3.942
16 C 0.556 3.444
17 O -0.577 6.577
18 C -0.196 4.196
19 C -0.005 4.005
20 C -0.167 4.167
21 C 0.347 3.653
22 N -0.420 5.420
23 C -0.043 4.043
24 C -0.036 4.036
25 N -0.512 5.512
26 C 0.205 3.795
27 N -0.523 5.523
28 C 0.175 3.825
29 H -0.003 1.003
30 H 0.023 0.977
31 H 0.031 0.969
32 H 0.249 0.751
33 H 0.062 0.938
34 H 0.035 0.965
35 H 0.023 0.977
36 H 0.060 0.940
37 H 0.115 0.885
38 H 0.066 0.934
39 H 0.099 0.901
40 H 0.087 0.913
41 H 0.081 0.919
42 H 0.196 0.804
43 H 0.196 0.804
44 H 0.184 0.816
45 H 0.192 0.808
46 H 0.256 0.744
47 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.431 -23.419 -18.908 30.585
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 N -0.346 5.346
3 C -0.392 4.392
4 H 0.077 0.923
5 C -0.248 4.248
6 N -0.584 5.584
7 Si 0.793 3.207
8 H -0.208 1.208
9 H -0.215 1.215
10 H -0.203 1.203
11 C 0.025 3.975
12 C -0.173 4.173
13 C 0.001 3.999
14 N -0.333 5.333
15 C -0.083 4.083
16 C 0.345 3.655
17 O -0.457 6.457
18 C -0.202 4.202
19 C -0.031 4.031
20 C -0.189 4.189
21 C 0.119 3.881
22 N -0.103 5.103
23 C -0.172 4.172
24 C -0.180 4.180
25 N -0.229 5.229
26 C -0.076 4.076
27 N -0.235 5.235
28 C 0.016 3.984
29 H 0.016 0.984
30 H 0.042 0.958
31 H 0.049 0.951
32 H 0.059 0.941
33 H 0.080 0.920
34 H 0.053 0.947
35 H 0.042 0.958
36 H 0.079 0.921
37 H 0.133 0.867
38 H 0.085 0.915
39 H 0.117 0.883
40 H 0.106 0.894
41 H 0.099 0.901
42 H 0.213 0.787
43 H 0.213 0.787
44 H 0.201 0.799
45 H 0.209 0.791
46 H 0.272 0.728
47 H 0.180 0.820
Dipole moment (debyes) X Y Z Total
from point charges 5.995 -22.915 -19.655 30.779
hybrid contribution 0.275 1.968 1.200 2.322
sum 6.270 -20.946 -18.456 28.612
Atomic orbital electron populations
1.20517 0.82603 0.96805 0.96755 1.44145 1.02275 1.01742 1.86451
1.19380 0.98692 0.87443 1.33686 0.92309 1.25769 0.98698 1.01838
0.98493 1.70193 1.20246 1.27921 1.40074 0.85376 0.77818 0.79778
0.77702 1.20760 1.21472 1.20302 1.20808 0.95411 0.87079 0.94216
1.22298 0.99427 0.96282 0.99252 1.21478 1.00730 0.96118 0.81549
1.47889 1.20234 1.50614 1.14592 1.22535 0.92678 0.94980 0.98090
1.18379 0.81869 0.78833 0.86452 1.90828 1.44517 1.42187 1.68184
1.20846 1.06561 0.98566 0.94221 1.22350 0.91148 0.94527 0.95044
1.21949 1.02230 1.01228 0.93457 1.18775 0.94460 0.91212 0.83678
1.43292 1.42728 1.18179 1.06083 1.23167 1.04052 1.00137 0.89837
1.22762 1.03983 0.92480 0.98744 1.70352 1.15735 1.20098 1.16723
1.26272 1.02187 0.91881 0.87263 1.66998 1.21260 1.19540 1.15657
1.22599 0.90535 0.99232 0.86035 0.98434 0.95839 0.95055 0.94138
0.91969 0.94671 0.95786 0.92099 0.86698 0.91518 0.88276 0.89399
0.90067 0.78740 0.78669 0.79906 0.79064 0.72810 0.82048
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.18 8.79 8.99 127.77 1.15 9.93 16
2 N -0.62 -31.82 2.92 -726.92 -2.12 -33.94 16
3 C -0.26 -14.98 9.65 84.04 0.81 -14.16 16
4 H 0.06 3.38 7.85 -2.91 -0.02 3.36 16
5 C -0.05 -3.07 5.09 84.86 0.43 -2.64 16
6 N -0.94 -56.48 10.72 21.65 0.23 -56.25 16
7 Si 0.97 46.75 29.57 68.60 2.03 48.78 16
8 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16
9 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16
10 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16
11 C 0.15 5.99 5.68 86.38 0.49 6.48 16
12 C -0.13 -4.34 5.86 30.59 0.18 -4.16 16
13 C 0.12 2.97 5.43 86.38 0.47 3.44 16
14 N -0.60 -11.97 2.87 -850.40 -2.44 -14.42 16
15 C 0.06 0.51 8.89 127.77 1.14 1.65 16
16 C 0.56 13.92 7.36 86.74 0.64 14.56 16
17 O -0.58 -20.42 16.48 -3.97 -0.07 -20.48 16
18 C -0.20 -3.60 5.24 -19.99 -0.10 -3.70 16
19 C -0.01 -0.04 7.66 22.70 0.17 0.13 16
20 C -0.17 -1.26 9.48 22.44 0.21 -1.04 16
21 C 0.35 5.42 7.49 132.89 1.00 6.41 16
22 N -0.42 -6.57 2.98 -355.79 -1.06 -7.63 16
23 C -0.04 -0.75 11.16 83.01 0.93 0.18 16
24 C -0.04 -0.61 11.85 83.50 0.99 0.38 16
25 N -0.51 -9.26 11.24 -199.64 -2.24 -11.51 16
26 C 0.21 2.52 11.89 179.97 2.14 4.66 16
27 N -0.52 -10.93 9.87 -191.85 -1.89 -12.82 16
28 C 0.17 3.78 10.80 85.04 0.92 4.70 16
29 H 0.00 -0.14 7.74 -2.39 -0.02 -0.16 16
30 H 0.02 1.26 6.86 -2.39 -0.02 1.24 16
31 H 0.03 1.27 8.09 -2.39 -0.02 1.25 16
32 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16
33 H 0.06 2.13 8.07 -2.39 -0.02 2.11 16
34 H 0.03 1.47 8.04 -2.39 -0.02 1.45 16
35 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16
36 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16
37 H 0.11 1.92 8.07 -2.39 -0.02 1.90 16
38 H 0.07 1.90 7.36 -2.39 -0.02 1.88 16
39 H 0.10 0.16 6.96 -2.39 -0.02 0.14 16
40 H 0.09 0.73 8.04 -2.38 -0.02 0.71 16
41 H 0.08 0.60 5.76 -2.39 -0.01 0.58 16
42 H 0.20 0.23 5.43 -2.91 -0.02 0.21 16
43 H 0.20 -0.37 6.75 -2.91 -0.02 -0.39 16
44 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16
45 H 0.19 2.31 8.06 -2.91 -0.02 2.28 16
46 H 0.26 0.38 7.05 -2.91 -0.02 0.36 16
47 H 0.16 3.80 8.06 -2.91 -0.02 3.77 16
Total: -1.00 -84.29 391.32 4.97 -79.32
By element:
Atomic # 1 Polarization: 1.14 SS G_CDS: 0.98 Total: 2.12 kcal
Atomic # 6 Polarization: 15.26 SS G_CDS: 11.55 Total: 26.81 kcal
Atomic # 7 Polarization: -127.03 SS G_CDS: -9.53 Total: -136.56 kcal
Atomic # 8 Polarization: -20.42 SS G_CDS: -0.07 Total: -20.48 kcal
Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal
Total: -84.29 4.97 -79.32 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001280848398.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 171.401 kcal
(2) G-P(sol) polarization free energy of solvation -84.295 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.106 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.325 kcal
(6) G-S(sol) free energy of system = (1) + (5) 92.076 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds