Wall clock time and date at job start Sat Apr 11 2020 06:58:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46495 * 1
3 3 C 1.35995 * 126.29284 * 2 1
4 4 N 1.30223 * 110.17836 * 180.02562 * 3 2 1
5 5 C 1.35433 * 109.57627 * 359.97438 * 4 3 2
6 6 C 1.39894 * 133.80980 * 179.97438 * 5 4 3
7 7 C 1.36986 * 118.35894 * 179.73443 * 6 5 4
8 8 C 1.39726 * 119.60102 * 0.53321 * 7 6 5
9 9 C 1.47975 * 119.43201 * 179.72603 * 8 7 6
10 10 O 1.21540 * 119.99726 * 344.57309 * 9 8 7
11 11 N 1.34782 * 120.00079 * 164.56774 * 9 8 7
12 12 C 1.46926 * 120.62852 * 352.81027 * 11 9 8
13 13 C 1.53191 * 108.77261 * 233.58314 * 12 11 9
14 14 C 1.53038 * 109.31429 * 305.36723 * 13 12 11
15 15 C 1.53045 * 109.53945 * 61.36448 * 14 13 12
16 16 H 1.08996 * 109.51834 * 58.60028 * 15 14 13
17 17 C 1.52997 * 109.49748 * 178.68280 * 15 14 13
18 18 N 1.46496 * 109.47000 * 184.83825 * 17 15 14
19 19 C 1.36936 * 120.00049 * 180.02562 * 18 17 15
20 20 H 1.07998 * 120.00326 * 0.02562 * 19 18 17
21 21 C 1.38814 * 120.00088 * 180.02562 * 19 18 17
22 22 N 1.31623 * 120.00096 * 359.97438 * 21 19 18
23 23 Si 1.86796 * 120.00246 * 179.97438 * 21 19 18
24 24 H 1.48498 * 109.47597 * 179.97438 * 23 21 19
25 25 H 1.48501 * 109.46941 * 299.99889 * 23 21 19
26 26 H 1.48503 * 109.46888 * 59.99552 * 23 21 19
27 27 C 1.46927 * 120.62923 * 172.78691 * 11 9 8
28 28 N 1.32657 * 121.14050 * 359.45085 * 8 7 6
29 29 C 1.31882 * 121.36860 * 0.27719 * 28 8 7
30 30 H 1.09001 * 109.47769 * 269.96023 * 1 2 3
31 31 H 1.09005 * 109.47064 * 29.96534 * 1 2 3
32 32 H 1.09004 * 109.46926 * 149.95582 * 1 2 3
33 33 H 1.07997 * 124.91159 * 0.02562 * 3 2 1
34 34 H 1.08001 * 120.82182 * 0.02562 * 6 5 4
35 35 H 1.07999 * 120.19983 * 180.25968 * 7 6 5
36 36 H 1.08999 * 109.58782 * 353.37162 * 12 11 9
37 37 H 1.09002 * 109.58215 * 113.65759 * 12 11 9
38 38 H 1.08998 * 109.49686 * 65.31816 * 13 12 11
39 39 H 1.09008 * 109.49733 * 185.38547 * 13 12 11
40 40 H 1.09008 * 109.45959 * 301.34395 * 14 13 12
41 41 H 1.08999 * 109.46314 * 181.38563 * 14 13 12
42 42 H 1.08997 * 109.47098 * 64.84200 * 17 15 14
43 43 H 1.09002 * 109.47426 * 304.83966 * 17 15 14
44 44 H 0.97002 * 119.99957 * 0.02562 * 18 17 15
45 45 H 0.97008 * 119.99773 * 0.02562 * 22 21 19
46 46 H 1.08997 * 109.58252 * 6.62359 * 27 11 9
47 47 H 1.09005 * 109.70064 * 246.27313 * 27 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.2699 1.0961 0.0000
4 7 3.5210 0.7347 -0.0005
5 6 3.6028 -0.6172 -0.0004
6 6 4.6689 -1.5229 -0.0012
7 6 4.3844 -2.8629 0.0049
8 6 3.0526 -3.2857 0.0004
9 6 2.7496 -4.7340 0.0009
10 8 3.6193 -5.5369 -0.2750
11 7 1.5091 -5.1629 0.3074
12 6 0.4909 -4.2223 0.7944
13 6 -0.0779 -4.7516 2.1147
14 6 -0.5882 -6.1797 1.9096
15 6 0.5731 -7.0826 1.4875
16 1 1.3489 -7.0598 2.2527
17 6 0.0684 -8.5166 1.3146
18 7 1.1996 -9.4007 1.0237
19 6 0.9895 -10.7397 0.8283
20 1 -0.0101 -11.1439 0.8882
21 6 2.0616 -11.5776 0.5532
22 7 3.2799 -11.0850 0.4797
23 14 1.7751 -13.4042 0.2874
24 1 3.0716 -14.0736 0.0110
25 1 1.1640 -13.9920 1.5066
26 1 0.8618 -13.5991 -0.8672
27 6 1.1493 -6.5798 0.1602
28 7 2.0552 -2.4111 0.0012
29 6 2.2814 -1.1118 0.0008
30 1 -0.3635 -0.0007 1.0276
31 1 -0.3633 0.8903 -0.5133
32 1 -0.3633 -0.8896 -0.5145
33 1 1.9220 2.1185 0.0004
34 1 5.6911 -1.1743 -0.0018
35 1 5.1846 -3.5881 0.0087
36 1 0.9448 -3.2448 0.9578
37 1 -0.3084 -4.1357 0.0584
38 1 0.7040 -4.7502 2.8742
39 1 -0.9005 -4.1137 2.4382
40 1 -1.3526 -6.1840 1.1325
41 1 -1.0159 -6.5499 2.8413
42 1 -0.6435 -8.5542 0.4900
43 1 -0.4211 -8.8427 2.2323
44 1 2.0975 -9.0377 0.9695
45 1 3.4287 -10.1364 0.6181
46 1 2.0375 -7.1577 -0.0950
47 1 0.4033 -6.6896 -0.6270
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001566905007.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:58:55
Heat of formation + Delta-G solvation = 87.125455 kcal
Electronic energy + Delta-G solvation = -29980.914127 eV
Core-core repulsion = 25972.761098 eV
Total energy + Delta-G solvation = -4008.153029 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-42.81693 -40.44620 -38.53190 -37.43625 -35.25433 -34.88030 -33.13577 -32.20722
-31.70993 -30.45857 -29.38291 -27.66682 -26.17321 -25.23856 -24.42762 -23.27977
-23.05840 -21.53712 -21.35860 -20.54399 -19.45201 -18.28255 -17.93406 -17.23326
-17.01936 -16.64600 -16.01894 -15.37974 -15.31185 -15.05117 -14.70560 -14.51025
-14.30947 -13.94349 -13.82688 -13.69636 -13.50582 -13.32956 -13.18655 -13.06426
-12.88147 -12.73336 -12.45082 -12.32692 -11.72884 -11.28369 -11.21072 -11.00781
-10.73965 -10.64967 -10.60584 -10.42239 -10.21114 -10.19492 -9.89396 -9.28096
-9.10333 -9.03617 -8.90734 -8.81122 -8.47497 -6.91702 -6.00645 -3.00739
0.08491 0.86191 1.79883 2.11136 2.78355 2.93687 3.47837 3.56666
3.61031 3.61973 3.78122 3.78754 4.07106 4.26213 4.50564 4.58612
4.62368 4.71515 4.77082 4.89419 4.95465 4.99454 5.04638 5.16381
5.22127 5.40921 5.43359 5.59390 5.69737 5.71114 5.74274 5.77516
5.85198 5.90488 5.97626 6.05225 6.11058 6.14174 6.23021 6.37737
6.38603 6.45875 6.66607 6.73952 6.84698 7.20504 7.22899 7.47118
7.88316 8.15291 8.85390 9.32636 10.18850 10.33818 11.47803
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.020623 B = 0.002470 C = 0.002251
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1357.358128 B =11331.164481 C =12436.139030
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.078 3.922
2 N -0.484 5.484
3 C 0.280 3.720
4 N -0.490 5.490
5 C 0.021 3.979
6 C -0.024 4.024
7 C -0.124 4.124
8 C 0.127 3.873
9 C 0.567 3.433
10 O -0.518 6.518
11 N -0.589 5.589
12 C 0.085 3.915
13 C -0.135 4.135
14 C -0.112 4.112
15 C -0.108 4.108
16 H 0.073 0.927
17 C 0.167 3.833
18 N -0.744 5.744
19 C -0.334 4.334
20 H 0.063 0.937
21 C -0.046 4.046
22 N -0.942 5.942
23 Si 1.081 2.919
24 H -0.285 1.285
25 H -0.296 1.296
26 H -0.296 1.296
27 C 0.119 3.881
28 N -0.442 5.442
29 C 0.227 3.773
30 H 0.079 0.921
31 H 0.091 0.909
32 H 0.091 0.909
33 H 0.224 0.776
34 H 0.150 0.850
35 H 0.159 0.841
36 H 0.129 0.871
37 H 0.062 0.938
38 H 0.062 0.938
39 H 0.070 0.930
40 H 0.063 0.937
41 H 0.065 0.935
42 H 0.020 0.980
43 H 0.022 0.978
44 H 0.368 0.632
45 H 0.257 0.743
46 H 0.100 0.900
47 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.493 30.048 0.615 30.975
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 N -0.177 5.177
3 C -0.006 4.006
4 N -0.209 5.209
5 C -0.101 4.101
6 C -0.051 4.051
7 C -0.147 4.147
8 C -0.021 4.021
9 C 0.352 3.648
10 O -0.393 6.393
11 N -0.320 5.320
12 C -0.038 4.038
13 C -0.174 4.174
14 C -0.150 4.150
15 C -0.127 4.127
16 H 0.091 0.909
17 C 0.039 3.961
18 N -0.390 5.390
19 C -0.465 4.465
20 H 0.081 0.919
21 C -0.244 4.244
22 N -0.587 5.587
23 Si 0.912 3.088
24 H -0.210 1.210
25 H -0.224 1.224
26 H -0.223 1.223
27 C -0.002 4.002
28 N -0.159 5.159
29 C -0.009 4.009
30 H 0.097 0.903
31 H 0.110 0.890
32 H 0.110 0.890
33 H 0.240 0.760
34 H 0.168 0.832
35 H 0.177 0.823
36 H 0.146 0.854
37 H 0.081 0.919
38 H 0.081 0.919
39 H 0.088 0.912
40 H 0.082 0.918
41 H 0.083 0.917
42 H 0.038 0.962
43 H 0.040 0.960
44 H 0.202 0.798
45 H 0.068 0.932
46 H 0.118 0.882
47 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -6.838 28.311 0.124 29.125
hybrid contribution -0.808 1.472 0.395 1.725
sum -7.646 29.784 0.519 30.754
Atomic orbital electron populations
1.22096 0.74968 1.05226 1.04023 1.45054 1.07851 1.04383 1.60380
1.25531 0.84912 0.93172 0.97004 1.70452 1.18190 1.10545 1.21747
1.19850 0.93294 0.91429 1.05484 1.20488 0.98601 0.90602 0.95439
1.21606 0.97135 0.96191 0.99800 1.21064 0.89344 0.92740 0.98935
1.17774 0.82672 0.85969 0.78350 1.90877 1.45483 1.54109 1.48851
1.47982 1.10753 1.09812 1.63473 1.22668 0.91387 0.95038 0.94682
1.21971 1.00565 0.97049 0.97773 1.21525 0.97675 0.94188 1.01623
1.21696 0.97870 0.95980 0.97169 0.90875 1.20563 0.91173 0.86861
0.97543 1.42422 1.04333 1.05362 1.86921 1.19999 0.95443 0.84843
1.46204 0.91871 1.25780 0.92583 1.05650 1.00351 1.70856 1.20627
1.14755 1.52491 0.83240 0.75136 0.74700 0.75759 1.21042 1.22361
1.22333 1.21775 1.01954 0.79264 0.97227 1.66505 1.35247 0.99425
1.14717 1.19062 0.89379 0.87925 1.04519 0.90269 0.89028 0.89000
0.76026 0.83214 0.82296 0.85444 0.91931 0.91920 0.91189 0.91803
0.91672 0.96185 0.96015 0.79803 0.93178 0.88155 0.91297
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.25 11.19 59.84 0.67 0.92 16
2 N -0.48 -3.41 3.20 -124.97 -0.40 -3.81 16
3 C 0.28 1.73 12.49 -89.73 -1.12 0.61 16
4 N -0.49 -4.90 11.27 -11.93 -0.13 -5.03 16
5 C 0.02 0.23 7.25 -84.58 -0.61 -0.38 16
6 C -0.02 -0.25 10.16 -39.42 -0.40 -0.65 16
7 C -0.12 -1.46 9.54 -39.48 -0.38 -1.84 16
8 C 0.13 1.71 6.48 -82.97 -0.54 1.17 16
9 C 0.57 9.32 7.62 -12.27 -0.09 9.23 16
10 O -0.52 -10.38 15.82 5.33 0.08 -10.30 16
11 N -0.59 -8.98 2.97 -173.83 -0.52 -9.50 16
12 C 0.08 1.00 5.82 -3.71 -0.02 0.98 16
13 C -0.14 -1.50 6.08 -26.61 -0.16 -1.66 16
14 C -0.11 -1.45 5.17 -26.69 -0.14 -1.59 16
15 C -0.11 -1.83 2.38 -90.50 -0.21 -2.04 16
16 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16
17 C 0.17 3.48 5.65 -4.05 -0.02 3.46 16
18 N -0.74 -19.64 5.37 -59.91 -0.32 -19.96 16
19 C -0.33 -9.81 9.99 -15.06 -0.15 -9.96 16
20 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16
21 C -0.05 -1.38 5.50 -17.43 -0.10 -1.48 16
22 N -0.94 -30.51 13.70 55.49 0.76 -29.75 16
23 Si 1.08 26.85 29.92 -169.99 -5.09 21.76 16
24 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16
25 H -0.30 -7.00 7.11 56.52 0.40 -6.60 16
26 H -0.30 -7.00 7.11 56.52 0.40 -6.60 16
27 C 0.12 2.08 5.53 -3.71 -0.02 2.06 16
28 N -0.44 -5.28 6.31 -8.82 -0.06 -5.34 16
29 C 0.23 2.43 8.01 -155.74 -1.25 1.19 16
30 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16
31 H 0.09 0.03 8.14 -51.93 -0.42 -0.40 16
32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16
33 H 0.22 0.21 8.06 -52.49 -0.42 -0.21 16
34 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16
35 H 0.16 1.78 7.69 -52.49 -0.40 1.38 16
36 H 0.13 1.46 4.20 -73.85 -0.31 1.15 16
37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16
39 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16
40 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16
41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
44 H 0.37 10.12 5.72 -40.82 -0.23 9.88 16
45 H 0.26 8.30 6.78 -40.82 -0.28 8.03 16
46 H 0.10 2.12 6.20 -51.93 -0.32 1.80 16
47 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16
LS Contribution 381.00 15.07 5.74 5.74
Total: -1.00 -38.27 381.00 -11.15 -49.42
By element:
Atomic # 1 Polarization: 13.42 SS G_CDS: -6.67 Total: 6.75 kcal
Atomic # 6 Polarization: 4.56 SS G_CDS: -4.55 Total: 0.02 kcal
Atomic # 7 Polarization: -72.72 SS G_CDS: -0.67 Total: -73.39 kcal
Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.30 kcal
Atomic # 14 Polarization: 26.85 SS G_CDS: -5.09 Total: 21.76 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -38.27 -11.15 -49.42 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001566905007.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 136.547 kcal
(2) G-P(sol) polarization free energy of solvation -38.274 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.272 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.147 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.421 kcal
(6) G-S(sol) free energy of system = (1) + (5) 87.125 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds