Wall clock time and date at job start Sat Apr 11 2020 06:57:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.38165 * 119.43898 * 2 1
4 4 C 1.38597 * 119.44716 * 180.02562 * 3 2 1
5 5 C 1.50701 * 120.79982 * 180.02562 * 4 3 2
6 6 C 1.39457 * 118.39896 * 0.02562 * 4 3 2
7 7 C 1.48366 * 120.56876 * 180.02562 * 6 4 3
8 8 N 1.34079 * 126.67857 * 173.89852 * 7 6 4
9 9 N 1.28991 * 107.26393 * 179.89215 * 8 7 6
10 10 N 1.28733 * 108.94902 * 0.37368 * 9 8 7
11 11 H 0.97002 * 125.32864 * 179.75957 * 10 9 8
12 12 N 1.28866 * 109.32711 * 359.75918 * 10 9 8
13 13 C 1.40150 * 118.86631 * 359.97438 * 6 4 3
14 14 N 1.38791 * 119.78505 * 179.97438 * 13 6 4
15 15 C 1.46957 * 110.99661 * 118.61362 * 14 13 6
16 16 C 1.53050 * 109.36572 * 183.18356 * 15 14 13
17 17 N 1.46957 * 109.36952 * 301.60253 * 16 15 14
18 18 C 1.46892 * 111.00265 * 183.18753 * 17 16 15
19 19 C 1.50704 * 109.47481 * 66.19740 * 18 17 16
20 20 H 1.08001 * 119.99855 * 0.02562 * 19 18 17
21 21 C 1.37872 * 120.00179 * 180.02562 * 19 18 17
22 22 N 1.31509 * 120.00245 * 180.02562 * 21 19 18
23 23 Si 1.86807 * 119.99990 * 0.02562 * 21 19 18
24 24 H 1.48501 * 109.47172 * 89.99895 * 23 21 19
25 25 H 1.48500 * 109.46980 * 210.00435 * 23 21 19
26 26 H 1.48500 * 109.46858 * 330.00037 * 23 21 19
27 27 C 1.46958 * 110.87831 * 59.31225 * 17 16 15
28 28 C 1.46960 * 110.99961 * 242.40932 * 14 13 6
29 29 N 1.31951 * 119.43940 * 180.26955 * 2 1 3
30 30 H 1.09008 * 109.47010 * 90.00592 * 1 2 3
31 31 H 1.09007 * 109.46926 * 209.99645 * 1 2 3
32 32 H 1.08998 * 109.47690 * 330.00123 * 1 2 3
33 33 H 1.08008 * 120.27590 * 359.97438 * 3 2 1
34 34 H 1.09000 * 109.47300 * 269.97835 * 5 4 3
35 35 H 1.09001 * 109.47401 * 29.97397 * 5 4 3
36 36 H 1.09001 * 109.47314 * 149.97780 * 5 4 3
37 37 H 1.08995 * 109.49278 * 303.15533 * 15 14 13
38 38 H 1.09003 * 109.49113 * 63.21853 * 15 14 13
39 39 H 1.09007 * 109.48851 * 61.56899 * 16 15 14
40 40 H 1.08999 * 109.49344 * 181.62834 * 16 15 14
41 41 H 1.08999 * 109.47093 * 186.19905 * 18 17 16
42 42 H 1.09003 * 109.47348 * 306.19579 * 18 17 16
43 43 H 0.96999 * 120.00469 * 179.97438 * 22 21 19
44 44 H 1.09001 * 109.48260 * 180.71276 * 27 17 16
45 45 H 1.09001 * 109.48415 * 60.65280 * 27 17 16
46 46 H 1.08996 * 109.48829 * 296.77997 * 28 14 13
47 47 H 1.09001 * 109.48581 * 56.82783 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1861 1.2032 0.0000
4 6 3.5721 1.2034 -0.0005
5 6 4.3436 2.4980 0.0000
6 6 4.2355 -0.0232 -0.0016
7 6 5.7181 -0.0792 -0.0017
8 7 6.4781 -1.1779 0.1117
9 7 7.7099 -0.7980 0.0641
10 7 7.7478 0.4823 -0.0651
11 1 8.5553 1.0167 -0.1217
12 7 6.5448 0.9424 -0.1075
13 6 3.4779 -1.2022 -0.0016
14 7 4.1185 -2.4334 -0.0032
15 6 3.7800 -3.2047 1.2011
16 6 4.5658 -4.5180 1.2002
17 7 4.2440 -5.2777 -0.0159
18 6 4.9219 -6.5809 -0.0176
19 6 4.3684 -7.4365 1.0927
20 1 3.5905 -7.0509 1.7350
21 6 4.8551 -8.7115 1.2885
22 7 4.3718 -9.4584 2.2571
23 14 6.2012 -9.3782 0.1780
24 1 7.5286 -9.0502 0.7573
25 1 6.0622 -10.8521 0.0618
26 1 6.0826 -8.7623 -1.1681
27 6 4.5823 -4.5064 -1.2202
28 6 3.7964 -3.1931 -1.2193
29 7 2.1556 -1.1491 -0.0054
30 1 -0.3633 -0.0001 -1.0277
31 1 -0.3633 -0.8901 0.5138
32 1 -0.3634 0.8899 0.5138
33 1 1.6414 2.1359 -0.0004
34 1 4.5295 2.8107 -1.0275
35 1 3.7651 3.2656 0.5142
36 1 5.2941 2.3543 0.5137
37 1 4.0392 -2.6265 2.0880
38 1 2.7116 -3.4203 1.2066
39 1 5.6342 -4.3027 1.2222
40 1 4.2947 -5.1047 2.0779
41 1 4.7560 -7.0755 -0.9746
42 1 5.9911 -6.4344 0.1352
43 1 4.7139 -10.3555 2.3946
44 1 4.3232 -5.0847 -2.1071
45 1 5.6508 -4.2909 -1.2256
46 1 2.7282 -3.4085 -1.2413
47 1 4.0673 -2.6062 -2.0970
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001591941549.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:09
Heat of formation + Delta-G solvation = 193.657859 kcal
Electronic energy + Delta-G solvation = -30599.231030 eV
Core-core repulsion = 26627.990345 eV
Total energy + Delta-G solvation = -3971.240686 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.182 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-44.40170 -40.87179 -38.46616 -35.42144 -35.19679 -34.15701 -32.71983 -32.33830
-31.43748 -30.39375 -28.75041 -28.12817 -27.53909 -25.24146 -24.43240 -23.49754
-23.02379 -21.91078 -21.21212 -20.78180 -19.41662 -19.00418 -17.15416 -17.04505
-16.66924 -16.49591 -16.34167 -15.16721 -14.66626 -14.27182 -14.25606 -14.17564
-14.02977 -13.80532 -13.57116 -13.54172 -13.34533 -13.08801 -12.66494 -12.53030
-12.34297 -12.20662 -12.00378 -11.92032 -11.85622 -11.38215 -11.31781 -11.06213
-10.92564 -10.83354 -10.67179 -10.61025 -10.45129 -10.05011 -9.73861 -9.66818
-9.53909 -9.16006 -8.70270 -8.49408 -8.29802 -7.22747 -5.96923 -3.93380
0.43564 0.98482 1.20124 2.20500 2.35187 3.35852 3.42671 3.46046
3.52134 3.57251 3.73479 4.15413 4.25840 4.40165 4.50306 4.82509
4.90470 4.94606 5.06937 5.18849 5.32996 5.35344 5.35982 5.36819
5.40192 5.42841 5.56551 5.62443 5.69229 5.76506 5.80170 5.87961
5.90735 6.02173 6.06902 6.09972 6.22228 6.29744 6.42841 6.46709
6.69294 6.78292 6.95422 7.05719 7.23584 7.43595 7.70884 7.81818
8.03260 8.17529 8.24637 8.76006 9.12060 9.65560 11.16294
Molecular weight = 343.18amu
Principal moments of inertia in cm(-1)
A = 0.013274 B = 0.003294 C = 0.002784
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2108.827058 B = 8499.024728 C =10056.266871
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C 0.160 3.840
3 C -0.189 4.189
4 C 0.000 4.000
5 C -0.122 4.122
6 C -0.062 4.062
7 C 0.231 3.769
8 N -0.211 5.211
9 N -0.060 5.060
10 N -0.240 5.240
11 H 0.470 0.530
12 N -0.305 5.305
13 C 0.355 3.645
14 N -0.475 5.475
15 C 0.071 3.929
16 C 0.070 3.930
17 N -0.527 5.527
18 C 0.163 3.837
19 C -0.506 4.506
20 H 0.081 0.919
21 C 0.068 3.932
22 N -0.902 5.902
23 Si 0.875 3.125
24 H -0.278 1.278
25 H -0.287 1.287
26 H -0.267 1.267
27 C 0.057 3.943
28 C 0.073 3.927
29 N -0.509 5.509
30 H 0.080 0.920
31 H 0.081 0.919
32 H 0.076 0.924
33 H 0.140 0.860
34 H 0.079 0.921
35 H 0.070 0.930
36 H 0.093 0.907
37 H 0.066 0.934
38 H 0.055 0.945
39 H 0.036 0.964
40 H 0.093 0.907
41 H 0.027 0.973
42 H -0.015 1.015
43 H 0.262 0.738
44 H 0.072 0.928
45 H 0.036 0.964
46 H 0.056 0.944
47 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.005 28.895 -6.255 29.565
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.021 3.979
3 C -0.209 4.209
4 C -0.010 4.010
5 C -0.179 4.179
6 C -0.069 4.069
7 C -0.049 4.049
8 N -0.083 5.083
9 N -0.055 5.055
10 N -0.084 5.084
11 H 0.323 0.677
12 N -0.157 5.157
13 C 0.124 3.876
14 N -0.198 5.198
15 C -0.055 4.055
16 C -0.058 4.058
17 N -0.252 5.252
18 C 0.037 3.963
19 C -0.544 4.544
20 H 0.099 0.901
21 C -0.134 4.134
22 N -0.542 5.542
23 Si 0.702 3.298
24 H -0.204 1.204
25 H -0.213 1.213
26 H -0.192 1.192
27 C -0.072 4.072
28 C -0.054 4.054
29 N -0.222 5.222
30 H 0.099 0.901
31 H 0.100 0.900
32 H 0.094 0.906
33 H 0.158 0.842
34 H 0.098 0.902
35 H 0.089 0.911
36 H 0.111 0.889
37 H 0.085 0.915
38 H 0.073 0.927
39 H 0.054 0.946
40 H 0.111 0.889
41 H 0.045 0.955
42 H 0.003 0.997
43 H 0.072 0.928
44 H 0.091 0.909
45 H 0.054 0.946
46 H 0.074 0.926
47 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 0.154 27.573 -6.144 28.249
hybrid contribution 1.405 0.840 -0.625 1.752
sum 1.558 28.412 -6.769 29.249
Atomic orbital electron populations
1.20787 0.88562 1.03773 1.03314 1.21306 0.97093 0.87844 0.91661
1.21716 0.93338 0.99472 1.06390 1.20280 0.93757 0.94486 0.92434
1.21077 1.00835 0.92546 1.03410 1.17819 0.86092 0.93214 1.09776
1.23143 0.95226 0.84734 1.01748 1.76598 0.93664 1.23450 1.14624
1.79105 1.17140 0.94690 1.14593 1.47821 1.07938 1.06200 1.46481
0.67653 1.74951 0.90936 1.26407 1.23434 1.19953 0.86123 0.91525
0.90011 1.60409 1.53598 1.01136 1.04686 1.22209 0.99649 0.93855
0.89798 1.22006 0.97200 0.91561 0.95073 1.62119 1.58971 1.03809
1.00265 1.20150 0.91704 0.86325 0.98151 1.21050 1.21516 0.97908
1.13907 0.90146 1.24888 0.96532 0.96764 0.95167 1.69894 1.43160
1.09757 1.31367 0.86863 0.82773 0.78157 0.81960 1.20369 1.21310
1.19175 1.22075 0.97508 0.92621 0.94970 1.22111 0.99606 0.93688
0.89997 1.67886 1.09633 1.29759 1.14919 0.90113 0.90031 0.90563
0.84244 0.90203 0.91135 0.88889 0.91506 0.92651 0.94624 0.88929
0.95458 0.99688 0.92778 0.90939 0.94619 0.92599 0.91787
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.84 10.16 36.01 0.37 -0.48 16
2 C 0.16 1.76 6.78 -82.57 -0.56 1.21 16
3 C -0.19 -1.74 9.42 -39.48 -0.37 -2.11 16
4 C 0.00 0.00 5.94 -104.04 -0.62 -0.61 16
5 C -0.12 -0.92 9.21 36.01 0.33 -0.59 16
6 C -0.06 -0.82 5.91 -104.56 -0.62 -1.44 16
7 C 0.23 3.11 7.74 -156.29 -1.21 1.90 16
8 N -0.21 -3.23 11.00 32.14 0.35 -2.88 16
9 N -0.06 -0.77 13.47 60.35 0.81 0.04 16
10 N -0.24 -2.14 7.90 60.35 0.48 -1.66 16
11 H 0.47 1.80 8.96 -340.36 -3.05 -1.25 16
12 N -0.30 -3.21 9.19 32.16 0.30 -2.92 16
13 C 0.36 5.31 5.34 -154.90 -0.83 4.49 16
14 N -0.47 -7.83 2.93 -172.80 -0.51 -8.34 16
15 C 0.07 1.27 5.44 -3.77 -0.02 1.25 16
16 C 0.07 1.45 5.43 -3.77 -0.02 1.43 16
17 N -0.53 -11.63 4.70 -235.91 -1.11 -12.74 16
18 C 0.16 4.11 3.79 -4.98 -0.02 4.09 16
19 C -0.51 -14.68 9.03 -34.44 -0.31 -14.99 16
20 H 0.08 2.53 7.38 -52.49 -0.39 2.14 16
21 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16
22 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16
23 Si 0.87 22.10 27.47 -169.99 -4.67 17.43 16
24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
26 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16
27 C 0.06 1.07 5.61 -3.77 -0.02 1.05 16
28 C 0.07 1.21 5.44 -3.77 -0.02 1.19 16
29 N -0.51 -7.27 9.54 -8.45 -0.08 -7.35 16
30 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16
31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
32 H 0.08 0.41 8.07 -51.93 -0.42 0.00 16
33 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16
34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16
35 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16
36 H 0.09 0.78 5.48 -51.93 -0.28 0.50 16
37 H 0.07 1.13 8.13 -51.93 -0.42 0.70 16
38 H 0.06 1.04 7.96 -51.93 -0.41 0.63 16
39 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16
40 H 0.09 2.09 6.79 -51.93 -0.35 1.73 16
41 H 0.03 0.70 7.09 -51.93 -0.37 0.33 16
42 H -0.01 -0.37 7.55 -51.93 -0.39 -0.76 16
43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16
44 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16
45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16
46 H 0.06 0.98 7.97 -51.93 -0.41 0.57 16
47 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16
LS Contribution 378.34 15.07 5.70 5.70
Total: -1.00 -34.92 378.34 -11.44 -46.35
By element:
Atomic # 1 Polarization: 4.91 SS G_CDS: -9.47 Total: -4.56 kcal
Atomic # 6 Polarization: 2.30 SS G_CDS: -4.02 Total: -1.72 kcal
Atomic # 7 Polarization: -64.22 SS G_CDS: 1.02 Total: -63.20 kcal
Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -34.92 -11.44 -46.35 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001591941549.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 240.010 kcal
(2) G-P(sol) polarization free energy of solvation -34.915 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 205.095 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.437 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.352 kcal
(6) G-S(sol) free energy of system = (1) + (5) 193.658 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds