Wall clock time and date at job start Sat Apr 11 2020 06:57:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.38165 * 119.43898 * 2 1
4 4 C 1.38597 * 119.44716 * 180.02562 * 3 2 1
5 5 C 1.50701 * 120.79982 * 180.02562 * 4 3 2
6 6 C 1.39457 * 118.39896 * 0.02562 * 4 3 2
7 7 C 1.48366 * 120.56876 * 180.02562 * 6 4 3
8 8 N 1.34079 * 126.67857 * 173.89852 * 7 6 4
9 9 N 1.28991 * 107.26393 * 179.89215 * 8 7 6
10 10 N 1.28733 * 108.94902 * 0.37368 * 9 8 7
11 11 H 0.97002 * 125.32864 * 179.75957 * 10 9 8
12 12 N 1.28866 * 109.32711 * 359.75918 * 10 9 8
13 13 C 1.40150 * 118.86631 * 359.97438 * 6 4 3
14 14 N 1.38791 * 119.78505 * 179.97438 * 13 6 4
15 15 C 1.46957 * 110.99661 * 118.61362 * 14 13 6
16 16 C 1.53050 * 109.36572 * 183.18356 * 15 14 13
17 17 N 1.46957 * 109.36952 * 301.60253 * 16 15 14
18 18 C 1.46892 * 111.00265 * 183.18753 * 17 16 15
19 19 C 1.50704 * 109.47481 * 66.19740 * 18 17 16
20 20 H 1.08001 * 119.99855 * 0.02562 * 19 18 17
21 21 C 1.37872 * 120.00179 * 180.02562 * 19 18 17
22 22 N 1.31509 * 120.00245 * 180.02562 * 21 19 18
23 23 Si 1.86807 * 119.99990 * 0.02562 * 21 19 18
24 24 H 1.48501 * 109.47172 * 89.99895 * 23 21 19
25 25 H 1.48500 * 109.46980 * 210.00435 * 23 21 19
26 26 H 1.48500 * 109.46858 * 330.00037 * 23 21 19
27 27 C 1.46958 * 110.87831 * 59.31225 * 17 16 15
28 28 C 1.46960 * 110.99961 * 242.40932 * 14 13 6
29 29 N 1.31951 * 119.43940 * 180.26955 * 2 1 3
30 30 H 1.09008 * 109.47010 * 90.00592 * 1 2 3
31 31 H 1.09007 * 109.46926 * 209.99645 * 1 2 3
32 32 H 1.08998 * 109.47690 * 330.00123 * 1 2 3
33 33 H 1.08008 * 120.27590 * 359.97438 * 3 2 1
34 34 H 1.09000 * 109.47300 * 269.97835 * 5 4 3
35 35 H 1.09001 * 109.47401 * 29.97397 * 5 4 3
36 36 H 1.09001 * 109.47314 * 149.97780 * 5 4 3
37 37 H 1.08995 * 109.49278 * 303.15533 * 15 14 13
38 38 H 1.09003 * 109.49113 * 63.21853 * 15 14 13
39 39 H 1.09007 * 109.48851 * 61.56899 * 16 15 14
40 40 H 1.08999 * 109.49344 * 181.62834 * 16 15 14
41 41 H 1.08999 * 109.47093 * 186.19905 * 18 17 16
42 42 H 1.09003 * 109.47348 * 306.19579 * 18 17 16
43 43 H 0.96999 * 120.00469 * 179.97438 * 22 21 19
44 44 H 1.09001 * 109.48260 * 180.71276 * 27 17 16
45 45 H 1.09001 * 109.48415 * 60.65280 * 27 17 16
46 46 H 1.08996 * 109.48829 * 296.77997 * 28 14 13
47 47 H 1.09001 * 109.48581 * 56.82783 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1861 1.2032 0.0000
4 6 3.5721 1.2034 -0.0005
5 6 4.3436 2.4980 0.0000
6 6 4.2355 -0.0232 -0.0016
7 6 5.7181 -0.0792 -0.0017
8 7 6.4781 -1.1779 0.1117
9 7 7.7099 -0.7980 0.0641
10 7 7.7478 0.4823 -0.0651
11 1 8.5553 1.0167 -0.1217
12 7 6.5448 0.9424 -0.1075
13 6 3.4779 -1.2022 -0.0016
14 7 4.1185 -2.4334 -0.0032
15 6 3.7800 -3.2047 1.2011
16 6 4.5658 -4.5180 1.2002
17 7 4.2440 -5.2777 -0.0159
18 6 4.9219 -6.5809 -0.0176
19 6 4.3684 -7.4365 1.0927
20 1 3.5905 -7.0509 1.7350
21 6 4.8551 -8.7115 1.2885
22 7 4.3718 -9.4584 2.2571
23 14 6.2012 -9.3782 0.1780
24 1 7.5286 -9.0502 0.7573
25 1 6.0622 -10.8521 0.0618
26 1 6.0826 -8.7623 -1.1681
27 6 4.5823 -4.5064 -1.2202
28 6 3.7964 -3.1931 -1.2193
29 7 2.1556 -1.1491 -0.0054
30 1 -0.3633 -0.0001 -1.0277
31 1 -0.3633 -0.8901 0.5138
32 1 -0.3634 0.8899 0.5138
33 1 1.6414 2.1359 -0.0004
34 1 4.5295 2.8107 -1.0275
35 1 3.7651 3.2656 0.5142
36 1 5.2941 2.3543 0.5137
37 1 4.0392 -2.6265 2.0880
38 1 2.7116 -3.4203 1.2066
39 1 5.6342 -4.3027 1.2222
40 1 4.2947 -5.1047 2.0779
41 1 4.7560 -7.0755 -0.9746
42 1 5.9911 -6.4344 0.1352
43 1 4.7139 -10.3555 2.3946
44 1 4.3232 -5.0847 -2.1071
45 1 5.6508 -4.2909 -1.2256
46 1 2.7282 -3.4085 -1.2413
47 1 4.0673 -2.6062 -2.0970
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001591941549.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:08
Heat of formation + Delta-G solvation = 168.423741 kcal
Electronic energy + Delta-G solvation = -30600.325264 eV
Core-core repulsion = 26627.990345 eV
Total energy + Delta-G solvation = -3972.334919 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.182 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-45.30261 -41.84421 -39.85781 -36.89354 -36.02754 -35.11490 -34.62259 -33.40689
-32.58672 -31.92459 -30.17903 -29.27699 -28.27989 -26.86728 -25.36402 -24.60371
-24.41879 -23.30965 -22.52440 -21.93852 -20.59525 -20.15454 -18.93761 -18.15253
-18.00211 -17.37027 -17.35330 -16.54630 -16.33352 -15.90683 -15.67405 -15.33416
-15.16528 -15.10046 -14.78021 -14.64870 -14.28520 -14.14285 -14.09736 -13.66190
-13.42602 -13.27433 -13.18424 -13.04648 -12.86135 -12.78523 -12.62661 -12.46856
-12.27922 -12.20307 -12.11935 -11.92254 -11.76746 -11.73043 -11.62942 -11.35021
-10.77221 -10.71255 -10.34907 -9.59597 -9.57393 -9.02936 -8.26442 -6.29405
-0.44294 0.14044 0.29892 1.35802 1.37045 1.40557 1.48520 1.53520
2.36165 2.53391 2.63851 2.75566 3.05588 3.19849 3.27229 3.41177
3.70189 3.85221 4.05125 4.14638 4.25457 4.25671 4.26984 4.38733
4.45627 4.50750 4.56675 4.57791 4.64391 4.74224 4.77807 4.82288
4.84537 4.85942 4.94100 4.97625 5.03782 5.08448 5.12309 5.19906
5.26631 5.32642 5.54410 5.58286 5.79689 5.80113 5.98411 6.27454
6.36555 6.66342 6.75832 6.92765 7.32597 7.33912 8.90216
Molecular weight = 343.18amu
Principal moments of inertia in cm(-1)
A = 0.013274 B = 0.003294 C = 0.002784
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2108.827058 B = 8499.024728 C =10056.266871
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.104 4.104
2 C 0.146 3.854
3 C -0.171 4.171
4 C 0.001 3.999
5 C -0.118 4.118
6 C -0.075 4.075
7 C 0.217 3.783
8 N -0.254 5.254
9 N -0.078 5.078
10 N -0.209 5.209
11 H 0.491 0.509
12 N -0.284 5.284
13 C 0.326 3.674
14 N -0.472 5.472
15 C 0.090 3.910
16 C 0.080 3.920
17 N -0.540 5.540
18 C 0.174 3.826
19 C -0.514 4.514
20 H 0.038 0.962
21 C 0.009 3.991
22 N -0.948 5.948
23 Si 0.947 3.053
24 H -0.269 1.269
25 H -0.279 1.279
26 H -0.250 1.250
27 C 0.061 3.939
28 C 0.084 3.916
29 N -0.539 5.539
30 H 0.092 0.908
31 H 0.064 0.936
32 H 0.107 0.893
33 H 0.182 0.818
34 H 0.091 0.909
35 H 0.097 0.903
36 H 0.083 0.917
37 H 0.072 0.928
38 H 0.039 0.961
39 H 0.028 0.972
40 H 0.062 0.938
41 H 0.032 0.968
42 H -0.016 1.016
43 H 0.267 0.733
44 H 0.083 0.917
45 H 0.033 0.967
46 H 0.043 0.957
47 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.543 32.373 -8.080 33.370
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.007 3.993
3 C -0.190 4.190
4 C -0.009 4.009
5 C -0.174 4.174
6 C -0.082 4.082
7 C -0.063 4.063
8 N -0.125 5.125
9 N -0.073 5.073
10 N -0.058 5.058
11 H 0.349 0.651
12 N -0.138 5.138
13 C 0.095 3.905
14 N -0.196 5.196
15 C -0.038 4.038
16 C -0.049 4.049
17 N -0.265 5.265
18 C 0.047 3.953
19 C -0.552 4.552
20 H 0.056 0.944
21 C -0.188 4.188
22 N -0.588 5.588
23 Si 0.770 3.230
24 H -0.195 1.195
25 H -0.205 1.205
26 H -0.173 1.173
27 C -0.068 4.068
28 C -0.043 4.043
29 N -0.253 5.253
30 H 0.110 0.890
31 H 0.083 0.917
32 H 0.126 0.874
33 H 0.199 0.801
34 H 0.110 0.890
35 H 0.116 0.884
36 H 0.102 0.898
37 H 0.091 0.909
38 H 0.058 0.942
39 H 0.046 0.954
40 H 0.080 0.920
41 H 0.050 0.950
42 H 0.002 0.998
43 H 0.076 0.924
44 H 0.101 0.899
45 H 0.051 0.949
46 H 0.062 0.938
47 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 0.713 31.086 -7.979 32.102
hybrid contribution 1.160 -0.032 -0.002 1.160
sum 1.873 31.054 -7.981 32.118
Atomic orbital electron populations
1.20872 0.86511 1.04482 1.04214 1.21893 0.98504 0.87687 0.91200
1.22143 0.92973 1.00340 1.03531 1.20676 0.94485 0.94507 0.91245
1.21125 1.00393 0.91579 1.04317 1.17988 0.86119 0.93764 1.10329
1.23278 0.95657 0.84813 1.02501 1.76563 0.94599 1.25055 1.16333
1.79031 1.16555 0.96055 1.15622 1.47896 1.08528 1.05537 1.43861
0.65108 1.74951 0.90961 1.25310 1.22587 1.19856 0.86765 0.90942
0.92926 1.60298 1.54206 1.01561 1.03487 1.21880 0.97878 0.92657
0.91343 1.21828 0.97062 0.92440 0.93561 1.62034 1.58928 1.03522
1.02013 1.19907 0.91405 0.87419 0.96546 1.21231 1.20656 0.98825
1.14517 0.94397 1.25813 0.99234 0.96967 0.96778 1.70044 1.45031
1.10393 1.33382 0.85721 0.79235 0.77660 0.80361 1.19475 1.20471
1.17327 1.22127 0.97669 0.93386 0.93583 1.21959 0.98329 0.92928
0.91088 1.67795 1.09539 1.31923 1.16013 0.88997 0.91717 0.87446
0.80085 0.89050 0.88427 0.89820 0.90926 0.94223 0.95379 0.91999
0.95011 0.99827 0.92431 0.89851 0.94918 0.93825 0.90071
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.40 10.16 71.24 0.72 -0.67 16
2 C 0.15 2.93 6.78 42.53 0.29 3.22 16
3 C -0.17 -2.52 9.42 22.34 0.21 -2.31 16
4 C 0.00 0.01 5.94 -19.48 -0.12 -0.10 16
5 C -0.12 -1.32 9.21 71.24 0.66 -0.66 16
6 C -0.07 -1.90 5.91 -19.82 -0.12 -2.02 16
7 C 0.22 5.63 7.74 137.33 1.06 6.69 16
8 N -0.25 -7.76 11.00 -52.22 -0.57 -8.34 16
9 N -0.08 -1.94 13.47 37.02 0.50 -1.44 16
10 N -0.21 -3.33 7.90 37.02 0.29 -3.04 16
11 H 0.49 2.60 8.96 -347.53 -3.12 -0.52 16
12 N -0.28 -5.43 9.19 -52.17 -0.48 -5.91 16
13 C 0.33 9.72 5.34 133.40 0.71 10.44 16
14 N -0.47 -15.94 2.93 -700.61 -2.05 -17.99 16
15 C 0.09 3.36 5.44 86.31 0.47 3.83 16
16 C 0.08 3.50 5.43 86.31 0.47 3.96 16
17 N -0.54 -24.71 4.70 -900.28 -4.23 -28.95 16
18 C 0.17 8.96 3.79 85.56 0.32 9.28 16
19 C -0.51 -31.15 9.03 25.60 0.23 -30.92 16
20 H 0.04 2.55 7.38 -2.91 -0.02 2.53 16
21 C 0.01 0.56 5.47 84.65 0.46 1.02 16
22 N -0.95 -60.99 13.96 21.44 0.30 -60.69 16
23 Si 0.95 45.89 27.47 68.60 1.88 47.78 16
24 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16
25 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16
26 H -0.25 -11.32 6.54 99.48 0.65 -10.67 16
27 C 0.06 2.29 5.61 86.31 0.48 2.78 16
28 C 0.08 2.83 5.44 86.31 0.47 3.30 16
29 N -0.54 -15.28 9.54 -180.65 -1.72 -17.01 16
30 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16
31 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16
32 H 0.11 0.76 8.07 -2.39 -0.02 0.74 16
33 H 0.18 1.12 8.06 -2.91 -0.02 1.09 16
34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16
35 H 0.10 0.59 8.10 -2.39 -0.02 0.57 16
36 H 0.08 1.14 5.48 -2.39 -0.01 1.12 16
37 H 0.07 2.59 8.13 -2.39 -0.02 2.57 16
38 H 0.04 1.59 7.96 -2.39 -0.02 1.57 16
39 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16
40 H 0.06 3.04 6.79 -2.39 -0.02 3.03 16
41 H 0.03 1.61 7.09 -2.39 -0.02 1.59 16
42 H -0.02 -0.82 7.55 -2.39 -0.02 -0.84 16
43 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16
44 H 0.08 2.93 8.07 -2.39 -0.02 2.91 16
45 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16
46 H 0.04 1.57 7.97 -2.39 -0.02 1.55 16
47 H 0.08 2.45 8.13 -2.39 -0.02 2.43 16
Total: -1.00 -79.89 378.34 -1.92 -81.80
By element:
Atomic # 1 Polarization: 8.10 SS G_CDS: -2.16 Total: 5.94 kcal
Atomic # 6 Polarization: 1.51 SS G_CDS: 6.33 Total: 7.84 kcal
Atomic # 7 Polarization: -135.39 SS G_CDS: -7.97 Total: -143.36 kcal
Atomic # 14 Polarization: 45.89 SS G_CDS: 1.88 Total: 47.78 kcal
Total: -79.89 -1.92 -81.80 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001591941549.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 250.229 kcal
(2) G-P(sol) polarization free energy of solvation -79.887 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.342 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.918 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.805 kcal
(6) G-S(sol) free energy of system = (1) + (5) 168.424 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds