Wall clock time and date at job start Sat Apr 11 2020 06:57:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.35984 * 126.35153 * 2 1
4 4 N 1.30288 * 110.05495 * 179.97438 * 3 2 1
5 5 C 1.34655 * 109.66694 * 359.97438 * 4 3 2
6 6 C 1.37941 * 126.35835 * 179.97438 * 2 1 3
7 7 N 1.32111 * 133.80890 * 359.97438 * 6 2 1
8 8 C 1.31727 * 121.94796 * 180.02562 * 7 6 2
9 9 C 1.38340 * 121.54474 * 359.67919 * 8 7 6
10 10 C 1.39642 * 119.37559 * 0.61628 * 9 8 7
11 11 C 1.47760 * 121.07493 * 179.69385 * 10 9 8
12 12 O 1.21555 * 120.00256 * 137.16100 * 11 10 9
13 13 N 1.34787 * 119.99887 * 317.16699 * 11 10 9
14 14 C 1.47014 * 125.64860 * 354.72302 * 13 11 10
15 15 C 1.54318 * 107.27197 * 181.02634 * 14 13 11
16 16 C 1.55160 * 102.94260 * 22.19566 * 15 14 13
17 17 H 1.08998 * 111.00862 * 82.56970 * 16 15 14
18 18 C 1.53006 * 111.03515 * 206.41213 * 16 15 14
19 19 C 1.53002 * 109.46659 * 181.79372 * 18 16 15
20 20 N 1.46502 * 109.46701 * 179.97438 * 19 18 16
21 21 C 1.36939 * 119.99798 * 179.97438 * 20 19 18
22 22 H 1.07997 * 119.99959 * 0.02562 * 21 20 19
23 23 C 1.38817 * 119.99843 * 179.97438 * 21 20 19
24 24 N 1.31618 * 119.99936 * 359.97438 * 23 21 20
25 25 Si 1.86796 * 119.99725 * 180.02562 * 23 21 20
26 26 H 1.48497 * 109.47396 * 359.97438 * 25 23 21
27 27 H 1.48503 * 109.47134 * 120.00145 * 25 23 21
28 28 H 1.48504 * 109.46812 * 239.99929 * 25 23 21
29 29 C 1.47419 * 125.64647 * 174.68335 * 13 11 10
30 30 H 1.09005 * 109.47243 * 270.02103 * 1 2 3
31 31 H 1.08996 * 109.47460 * 30.03043 * 1 2 3
32 32 H 1.09001 * 109.46722 * 150.03022 * 1 2 3
33 33 H 1.08001 * 124.97526 * 359.95998 * 3 2 1
34 34 H 1.08000 * 119.22976 * 179.97438 * 8 7 6
35 35 H 1.08000 * 120.31271 * 180.31454 * 9 8 7
36 36 H 1.09008 * 109.88422 * 300.44478 * 14 13 11
37 37 H 1.08999 * 109.88601 * 61.45051 * 14 13 11
38 38 H 1.08994 * 110.72068 * 263.82762 * 15 14 13
39 39 H 1.09005 * 110.72286 * 140.55414 * 15 14 13
40 40 H 1.08995 * 109.46779 * 301.79353 * 18 16 15
41 41 H 1.08993 * 109.47097 * 61.79317 * 18 16 15
42 42 H 1.09004 * 109.46751 * 299.99410 * 19 18 16
43 43 H 1.08993 * 109.47411 * 60.00137 * 19 18 16
44 44 H 0.96998 * 120.00316 * 359.97438 * 20 19 18
45 45 H 0.97002 * 119.99860 * 179.97438 * 24 23 21
46 46 H 1.09004 * 110.36751 * 37.06607 * 29 13 11
47 47 H 1.09001 * 110.46450 * 274.79200 * 29 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2711 1.0952 0.0000
4 7 3.5216 0.7296 0.0005
5 6 3.6008 -0.6146 0.0015
6 6 2.2828 -1.1109 0.0005
7 7 2.0572 -2.4126 0.0015
8 6 3.0395 -3.2903 0.0023
9 6 4.3647 -2.8933 -0.0045
10 6 4.6718 -1.5311 0.0007
11 6 6.0741 -1.0654 0.0005
12 8 6.4065 -0.1383 -0.7119
13 7 6.9846 -1.6687 0.7902
14 6 6.7004 -2.7219 1.7757
15 6 8.0371 -3.0863 2.4553
16 6 8.9046 -1.8223 2.2158
17 1 8.6894 -1.0542 2.9585
18 6 10.3942 -2.1719 2.2084
19 6 11.2164 -0.8962 2.0147
20 7 12.6426 -1.2308 2.0082
21 6 13.5770 -0.2427 1.8472
22 1 13.2624 0.7833 1.7255
23 6 14.9285 -0.5596 1.8416
24 7 15.3118 -1.8098 1.9915
25 14 16.2030 0.7883 1.6228
26 1 15.5183 2.0978 1.4760
27 1 17.0935 0.8252 2.8106
28 1 17.0104 0.5134 0.4071
29 6 8.4306 -1.3822 0.8082
30 1 -0.3634 0.0004 1.0277
31 1 -0.3634 0.8897 -0.5143
32 1 -0.3633 -0.8903 -0.5134
33 1 1.9253 2.1184 -0.0006
34 1 2.8048 -4.3444 0.0035
35 1 5.1544 -3.6301 -0.0089
36 1 5.9947 -2.3527 2.5199
37 1 6.2862 -3.5967 1.2744
38 1 8.4864 -3.9582 1.9799
39 1 7.8931 -3.2586 3.5220
40 1 10.6629 -2.6369 3.1568
41 1 10.6008 -2.8647 1.3927
42 1 10.9475 -0.4313 1.0661
43 1 11.0098 -0.2034 2.8303
44 1 12.9252 -2.1522 2.1179
45 1 16.2562 -2.0313 1.9873
46 1 8.6080 -0.3163 0.6643
47 1 8.9429 -1.9586 0.0378
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001672862954.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:05
Heat of formation + Delta-G solvation = 77.777009 kcal
Electronic energy + Delta-G solvation = -28843.851354 eV
Core-core repulsion = 24835.292947 eV
Total energy + Delta-G solvation = -4008.558408 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-42.83108 -40.26764 -38.66539 -37.70912 -35.12328 -34.91934 -33.22885 -32.20409
-30.90996 -30.19063 -29.51727 -27.68233 -27.28343 -25.39877 -23.99509 -23.44949
-22.96971 -21.85949 -21.23852 -20.12252 -19.48430 -18.43758 -17.90685 -17.32696
-17.04924 -16.58974 -16.18000 -15.92585 -15.47955 -14.78454 -14.75747 -14.55745
-14.34120 -14.14694 -13.94772 -13.54466 -13.40005 -13.31024 -13.10103 -13.02597
-12.84773 -12.78237 -12.44109 -12.21412 -11.65834 -11.37776 -11.21663 -11.12868
-11.03264 -10.80748 -10.62247 -10.44997 -10.29985 -10.26831 -9.92606 -9.63521
-9.51029 -9.16405 -8.93142 -8.82383 -8.69594 -6.86674 -5.72053 -3.00168
0.09087 0.74077 1.84044 2.34745 2.59679 2.78632 3.44078 3.47382
3.53219 3.55593 3.58752 3.84254 4.03166 4.19715 4.38931 4.46386
4.50886 4.59324 4.60727 4.66567 4.72659 4.82449 4.90563 4.93103
5.12122 5.29916 5.41268 5.42954 5.46893 5.56617 5.61644 5.64640
5.70597 5.83060 5.86278 5.95079 6.10815 6.12160 6.18393 6.29305
6.41265 6.43061 6.43630 6.89763 6.93457 7.32680 7.37164 7.37779
7.76328 8.02330 8.47370 9.58429 10.16882 10.51405 11.51086
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.023263 B = 0.001889 C = 0.001789
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1203.327862 B =14815.606874 C =15644.813905
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.082 3.918
2 N -0.486 5.486
3 C 0.276 3.724
4 N -0.473 5.473
5 C 0.047 3.953
6 C 0.234 3.766
7 N -0.470 5.470
8 C 0.134 3.866
9 C -0.154 4.154
10 C -0.022 4.022
11 C 0.574 3.426
12 O -0.508 6.508
13 N -0.613 5.613
14 C 0.096 3.904
15 C -0.128 4.128
16 C -0.094 4.094
17 H 0.085 0.915
18 C -0.114 4.114
19 C 0.150 3.850
20 N -0.734 5.734
21 C -0.237 4.237
22 H 0.071 0.929
23 C -0.016 4.016
24 N -0.935 5.935
25 Si 0.907 3.093
26 H -0.280 1.280
27 H -0.292 1.292
28 H -0.292 1.292
29 C 0.111 3.889
30 H 0.077 0.923
31 H 0.091 0.909
32 H 0.089 0.911
33 H 0.225 0.775
34 H 0.173 0.827
35 H 0.153 0.847
36 H 0.066 0.934
37 H 0.071 0.929
38 H 0.081 0.919
39 H 0.083 0.917
40 H 0.069 0.931
41 H 0.066 0.934
42 H 0.020 0.980
43 H 0.018 0.982
44 H 0.383 0.617
45 H 0.254 0.746
46 H 0.083 0.917
47 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -35.368 -4.062 -1.318 35.625
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 N -0.178 5.178
3 C -0.009 4.009
4 N -0.190 5.190
5 C -0.076 4.076
6 C -0.002 4.002
7 N -0.183 5.183
8 C -0.032 4.032
9 C -0.177 4.177
10 C -0.035 4.035
11 C 0.361 3.639
12 O -0.382 6.382
13 N -0.348 5.348
14 C -0.027 4.027
15 C -0.166 4.166
16 C -0.114 4.114
17 H 0.104 0.896
18 C -0.152 4.152
19 C 0.023 3.977
20 N -0.378 5.378
21 C -0.368 4.368
22 H 0.089 0.911
23 C -0.212 4.212
24 N -0.584 5.584
25 Si 0.738 3.262
26 H -0.205 1.205
27 H -0.219 1.219
28 H -0.219 1.219
29 C -0.011 4.011
30 H 0.096 0.904
31 H 0.110 0.890
32 H 0.108 0.892
33 H 0.241 0.759
34 H 0.190 0.810
35 H 0.171 0.829
36 H 0.084 0.916
37 H 0.089 0.911
38 H 0.100 0.900
39 H 0.102 0.898
40 H 0.087 0.913
41 H 0.085 0.915
42 H 0.038 0.962
43 H 0.036 0.964
44 H 0.217 0.783
45 H 0.064 0.936
46 H 0.102 0.898
47 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -35.507 -3.012 -1.792 35.680
hybrid contribution 0.834 0.182 -0.055 0.856
sum -34.673 -2.830 -1.848 34.837
Atomic orbital electron populations
1.22045 0.75023 1.05034 1.03860 1.45128 1.07828 1.04525 1.60351
1.25683 0.84663 0.93294 0.97275 1.70293 1.17935 1.10589 1.20192
1.19177 0.92000 0.91341 1.05084 1.18894 0.88800 0.88075 1.04407
1.66161 1.38131 0.99425 1.14563 1.22506 0.86980 0.98461 0.95252
1.22284 0.98940 0.94517 1.01941 1.19532 0.92335 0.92252 0.99381
1.17564 0.83760 0.82169 0.80414 1.90855 1.79849 1.26691 1.40782
1.48403 1.08567 1.39102 1.38752 1.22242 0.98675 0.90520 0.91217
1.22732 0.93826 0.98780 1.01239 1.22351 0.95697 0.97180 0.96170
0.89648 1.21678 0.91537 0.99488 1.02496 1.20692 0.85308 0.93894
0.97836 1.42372 0.99426 1.08018 1.88013 1.19308 0.86903 0.89429
1.41151 0.91117 1.24742 0.97031 0.96334 1.03095 1.69671 1.14966
1.16179 1.57565 0.86111 0.81790 0.81055 0.77249 1.20535 1.21905
1.21887 1.22446 0.78351 1.02599 0.97685 0.90428 0.89042 0.89191
0.75853 0.80974 0.82931 0.91550 0.91067 0.90018 0.89826 0.91266
0.91534 0.96208 0.96428 0.78345 0.93639 0.89814 0.90684
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.27 11.20 59.85 0.67 0.94 16
2 N -0.49 -3.82 3.20 -124.98 -0.40 -4.22 16
3 C 0.28 2.27 12.50 -89.69 -1.12 1.14 16
4 N -0.47 -6.31 11.23 -11.88 -0.13 -6.44 16
5 C 0.05 0.63 6.92 -84.62 -0.59 0.04 16
6 C 0.23 2.57 8.02 -155.65 -1.25 1.32 16
7 N -0.47 -4.65 10.35 -12.30 -0.13 -4.77 16
8 C 0.13 1.01 11.14 -17.56 -0.20 0.82 16
9 C -0.15 -1.32 8.56 -39.02 -0.33 -1.65 16
10 C -0.02 -0.28 5.46 -104.45 -0.57 -0.85 16
11 C 0.57 8.68 7.48 -12.36 -0.09 8.59 16
12 O -0.51 -9.84 17.22 5.32 0.09 -9.74 16
13 N -0.61 -7.84 3.33 -171.67 -0.57 -8.42 16
14 C 0.10 0.86 5.90 -3.07 -0.02 0.85 16
15 C -0.13 -1.16 6.42 -24.90 -0.16 -1.32 16
16 C -0.09 -1.16 3.04 -88.46 -0.27 -1.43 16
17 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16
18 C -0.11 -1.74 4.84 -26.73 -0.13 -1.87 16
19 C 0.15 3.06 6.14 -4.04 -0.02 3.03 16
20 N -0.73 -19.06 5.60 -59.91 -0.34 -19.39 16
21 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16
22 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16
23 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16
24 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16
25 Si 0.91 22.99 29.55 -169.99 -5.02 17.96 16
26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16
27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16
28 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16
29 C 0.11 1.53 5.73 -2.53 -0.01 1.51 16
30 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16
31 H 0.09 0.05 8.14 -51.93 -0.42 -0.38 16
32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16
33 H 0.23 0.67 8.06 -52.49 -0.42 0.24 16
34 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16
35 H 0.15 0.92 6.02 -52.49 -0.32 0.61 16
36 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16
37 H 0.07 0.47 5.67 -51.93 -0.29 0.18 16
38 H 0.08 0.70 8.04 -51.93 -0.42 0.28 16
39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16
40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16
41 H 0.07 1.02 8.03 -51.93 -0.42 0.60 16
42 H 0.02 0.42 7.59 -51.93 -0.39 0.02 16
43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16
44 H 0.38 10.32 7.67 -40.82 -0.31 10.00 16
45 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16
46 H 0.08 1.33 7.95 -51.93 -0.41 0.92 16
47 H 0.07 1.05 7.96 -51.93 -0.41 0.63 16
LS Contribution 390.01 15.07 5.88 5.88
Total: -1.00 -39.82 390.01 -10.99 -50.81
By element:
Atomic # 1 Polarization: 9.58 SS G_CDS: -6.75 Total: 2.83 kcal
Atomic # 6 Polarization: 7.89 SS G_CDS: -4.34 Total: 3.55 kcal
Atomic # 7 Polarization: -70.44 SS G_CDS: -0.84 Total: -71.28 kcal
Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.74 kcal
Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.96 kcal
Total LS contribution 5.88 Total: 5.88 kcal
Total: -39.82 -10.99 -50.81 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001672862954.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 128.583 kcal
(2) G-P(sol) polarization free energy of solvation -39.818 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.765 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.988 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.806 kcal
(6) G-S(sol) free energy of system = (1) + (5) 77.777 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds