Wall clock time and date at job start Sat Apr 11 2020 06:57:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.35984 * 126.35153 * 2 1
4 4 N 1.30288 * 110.05495 * 179.97438 * 3 2 1
5 5 C 1.34655 * 109.66694 * 359.97438 * 4 3 2
6 6 C 1.37941 * 126.35835 * 179.97438 * 2 1 3
7 7 N 1.32111 * 133.80890 * 359.97438 * 6 2 1
8 8 C 1.31727 * 121.94796 * 180.02562 * 7 6 2
9 9 C 1.38340 * 121.54474 * 359.67919 * 8 7 6
10 10 C 1.39642 * 119.37559 * 0.61628 * 9 8 7
11 11 C 1.47760 * 121.07493 * 179.69385 * 10 9 8
12 12 O 1.21555 * 120.00256 * 137.16100 * 11 10 9
13 13 N 1.34787 * 119.99887 * 317.16699 * 11 10 9
14 14 C 1.47014 * 125.64860 * 354.72302 * 13 11 10
15 15 C 1.54318 * 107.27197 * 181.02634 * 14 13 11
16 16 C 1.55160 * 102.94260 * 22.19566 * 15 14 13
17 17 H 1.08998 * 111.00862 * 82.56970 * 16 15 14
18 18 C 1.53006 * 111.03515 * 206.41213 * 16 15 14
19 19 C 1.53002 * 109.46659 * 181.79372 * 18 16 15
20 20 N 1.46502 * 109.46701 * 179.97438 * 19 18 16
21 21 C 1.36939 * 119.99798 * 179.97438 * 20 19 18
22 22 H 1.07997 * 119.99959 * 0.02562 * 21 20 19
23 23 C 1.38817 * 119.99843 * 179.97438 * 21 20 19
24 24 N 1.31618 * 119.99936 * 359.97438 * 23 21 20
25 25 Si 1.86796 * 119.99725 * 180.02562 * 23 21 20
26 26 H 1.48497 * 109.47396 * 359.97438 * 25 23 21
27 27 H 1.48503 * 109.47134 * 120.00145 * 25 23 21
28 28 H 1.48504 * 109.46812 * 239.99929 * 25 23 21
29 29 C 1.47419 * 125.64647 * 174.68335 * 13 11 10
30 30 H 1.09005 * 109.47243 * 270.02103 * 1 2 3
31 31 H 1.08996 * 109.47460 * 30.03043 * 1 2 3
32 32 H 1.09001 * 109.46722 * 150.03022 * 1 2 3
33 33 H 1.08001 * 124.97526 * 359.95998 * 3 2 1
34 34 H 1.08000 * 119.22976 * 179.97438 * 8 7 6
35 35 H 1.08000 * 120.31271 * 180.31454 * 9 8 7
36 36 H 1.09008 * 109.88422 * 300.44478 * 14 13 11
37 37 H 1.08999 * 109.88601 * 61.45051 * 14 13 11
38 38 H 1.08994 * 110.72068 * 263.82762 * 15 14 13
39 39 H 1.09005 * 110.72286 * 140.55414 * 15 14 13
40 40 H 1.08995 * 109.46779 * 301.79353 * 18 16 15
41 41 H 1.08993 * 109.47097 * 61.79317 * 18 16 15
42 42 H 1.09004 * 109.46751 * 299.99410 * 19 18 16
43 43 H 1.08993 * 109.47411 * 60.00137 * 19 18 16
44 44 H 0.96998 * 120.00316 * 359.97438 * 20 19 18
45 45 H 0.97002 * 119.99860 * 179.97438 * 24 23 21
46 46 H 1.09004 * 110.36751 * 37.06607 * 29 13 11
47 47 H 1.09001 * 110.46450 * 274.79200 * 29 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2711 1.0952 0.0000
4 7 3.5216 0.7296 0.0005
5 6 3.6008 -0.6146 0.0015
6 6 2.2828 -1.1109 0.0005
7 7 2.0572 -2.4126 0.0015
8 6 3.0395 -3.2903 0.0023
9 6 4.3647 -2.8933 -0.0045
10 6 4.6718 -1.5311 0.0007
11 6 6.0741 -1.0654 0.0005
12 8 6.4065 -0.1383 -0.7119
13 7 6.9846 -1.6687 0.7902
14 6 6.7004 -2.7219 1.7757
15 6 8.0371 -3.0863 2.4553
16 6 8.9046 -1.8223 2.2158
17 1 8.6894 -1.0542 2.9585
18 6 10.3942 -2.1719 2.2084
19 6 11.2164 -0.8962 2.0147
20 7 12.6426 -1.2308 2.0082
21 6 13.5770 -0.2427 1.8472
22 1 13.2624 0.7833 1.7255
23 6 14.9285 -0.5596 1.8416
24 7 15.3118 -1.8098 1.9915
25 14 16.2030 0.7883 1.6228
26 1 15.5183 2.0978 1.4760
27 1 17.0935 0.8252 2.8106
28 1 17.0104 0.5134 0.4071
29 6 8.4306 -1.3822 0.8082
30 1 -0.3634 0.0004 1.0277
31 1 -0.3634 0.8897 -0.5143
32 1 -0.3633 -0.8903 -0.5134
33 1 1.9253 2.1184 -0.0006
34 1 2.8048 -4.3444 0.0035
35 1 5.1544 -3.6301 -0.0089
36 1 5.9947 -2.3527 2.5199
37 1 6.2862 -3.5967 1.2744
38 1 8.4864 -3.9582 1.9799
39 1 7.8931 -3.2586 3.5220
40 1 10.6629 -2.6369 3.1568
41 1 10.6008 -2.8647 1.3927
42 1 10.9475 -0.4313 1.0661
43 1 11.0098 -0.2034 2.8303
44 1 12.9252 -2.1522 2.1179
45 1 16.2562 -2.0313 1.9873
46 1 8.6080 -0.3163 0.6643
47 1 8.9429 -1.9586 0.0378
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001672862954.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:05
Heat of formation + Delta-G solvation = 50.574739 kcal
Electronic energy + Delta-G solvation = -28845.030933 eV
Core-core repulsion = 24835.292947 eV
Total energy + Delta-G solvation = -4009.737987 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-43.49558 -41.26863 -39.39214 -38.81672 -36.86295 -35.56045 -34.65908 -33.32229
-32.37789 -30.89771 -30.69147 -28.66596 -28.09514 -26.55609 -25.36203 -24.39222
-23.99114 -22.83356 -22.49861 -21.25466 -20.31627 -19.22708 -19.08168 -18.57948
-18.18161 -17.29058 -17.13159 -16.79210 -16.66776 -16.32645 -15.72652 -15.50442
-15.34867 -15.18183 -15.06942 -14.92893 -14.49300 -14.32322 -14.18861 -13.81535
-13.65468 -13.47073 -13.39289 -13.32369 -13.00712 -12.97877 -12.83499 -12.30975
-12.15456 -12.02418 -11.93391 -11.84428 -11.67996 -11.53551 -11.42229 -11.34961
-10.94633 -10.28876 -9.88473 -9.70313 -9.61505 -9.01142 -7.97296 -5.25890
-0.64893 0.07475 1.30385 1.45778 1.46710 1.51137 1.57121 1.72881
1.84512 2.54530 2.69212 2.96599 3.24273 3.33587 3.36108 3.57659
3.61235 3.64381 3.79278 3.89837 4.04218 4.14878 4.16538 4.24611
4.33628 4.35688 4.42961 4.50051 4.55453 4.63995 4.71537 4.75989
4.76858 4.81642 4.86485 4.92023 4.97234 5.03408 5.15487 5.17971
5.30336 5.38670 5.46684 5.49031 5.49798 5.91310 6.26223 6.35442
6.68834 6.71706 6.94777 7.32206 8.08185 8.32569 9.26260
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.023263 B = 0.001889 C = 0.001789
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1203.327862 B =14815.606874 C =15644.813905
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.076 3.924
2 N -0.481 5.481
3 C 0.290 3.710
4 N -0.539 5.539
5 C 0.014 3.986
6 C 0.218 3.782
7 N -0.475 5.475
8 C 0.140 3.860
9 C -0.134 4.134
10 C -0.056 4.056
11 C 0.569 3.431
12 O -0.570 6.570
13 N -0.610 5.610
14 C 0.093 3.907
15 C -0.116 4.116
16 C -0.086 4.086
17 H 0.082 0.918
18 C -0.098 4.098
19 C 0.147 3.853
20 N -0.746 5.746
21 C -0.249 4.249
22 H 0.070 0.930
23 C -0.074 4.074
24 N -0.967 5.967
25 Si 0.973 3.027
26 H -0.270 1.270
27 H -0.289 1.289
28 H -0.291 1.291
29 C 0.109 3.891
30 H 0.090 0.910
31 H 0.123 0.877
32 H 0.086 0.914
33 H 0.270 0.730
34 H 0.219 0.781
35 H 0.181 0.819
36 H 0.075 0.925
37 H 0.105 0.895
38 H 0.095 0.905
39 H 0.107 0.893
40 H 0.077 0.923
41 H 0.068 0.932
42 H 0.011 0.989
43 H 0.015 0.985
44 H 0.376 0.624
45 H 0.252 0.748
46 H 0.050 0.950
47 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -37.928 -5.594 -0.536 38.342
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 N -0.172 5.172
3 C 0.005 3.995
4 N -0.258 5.258
5 C -0.110 4.110
6 C -0.019 4.019
7 N -0.188 5.188
8 C -0.026 4.026
9 C -0.157 4.157
10 C -0.069 4.069
11 C 0.358 3.642
12 O -0.449 6.449
13 N -0.343 5.343
14 C -0.029 4.029
15 C -0.153 4.153
16 C -0.106 4.106
17 H 0.100 0.900
18 C -0.136 4.136
19 C 0.020 3.980
20 N -0.389 5.389
21 C -0.381 4.381
22 H 0.088 0.912
23 C -0.267 4.267
24 N -0.617 5.617
25 Si 0.802 3.198
26 H -0.195 1.195
27 H -0.216 1.216
28 H -0.218 1.218
29 C -0.014 4.014
30 H 0.109 0.891
31 H 0.142 0.858
32 H 0.105 0.895
33 H 0.285 0.715
34 H 0.236 0.764
35 H 0.198 0.802
36 H 0.093 0.907
37 H 0.123 0.877
38 H 0.114 0.886
39 H 0.125 0.875
40 H 0.095 0.905
41 H 0.086 0.914
42 H 0.029 0.971
43 H 0.033 0.967
44 H 0.208 0.792
45 H 0.061 0.939
46 H 0.068 0.932
47 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -38.143 -4.559 -0.976 38.427
hybrid contribution 1.526 0.668 -0.302 1.693
sum -36.617 -3.891 -1.278 36.845
Atomic orbital electron populations
1.22379 0.72271 1.06501 1.05167 1.45458 1.09291 1.03483 1.59013
1.26527 0.83585 0.94922 0.94495 1.70222 1.20896 1.11402 1.23295
1.19539 0.93371 0.91746 1.06310 1.19155 0.88626 0.89001 1.05074
1.66308 1.38872 0.99082 1.14575 1.23302 0.86070 1.00044 0.93212
1.22610 1.00358 0.93087 0.99602 1.19556 0.90539 0.94107 1.02695
1.18105 0.85059 0.81410 0.79614 1.90798 1.81059 1.29559 1.43479
1.48481 1.07643 1.39454 1.38723 1.22541 0.99016 0.90484 0.90810
1.22749 0.92629 0.96994 1.02961 1.22204 0.94216 0.99220 0.94936
0.89950 1.21508 0.92477 0.96708 1.02874 1.20869 0.83403 0.96604
0.97080 1.42574 1.01259 1.07171 1.87896 1.19664 0.87933 0.90084
1.40449 0.91209 1.25564 0.98978 0.98626 1.03513 1.69809 1.15155
1.17956 1.58801 0.85077 0.79036 0.78731 0.76942 1.19494 1.21567
1.21807 1.22343 0.79654 1.00602 0.98756 0.89139 0.85848 0.89496
0.71502 0.76439 0.80216 0.90709 0.87702 0.88643 0.87478 0.90472
0.91352 0.97095 0.96694 0.79179 0.93868 0.93155 0.91001
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.32 11.20 127.77 1.43 1.75 16
2 N -0.48 -6.98 3.20 -549.31 -1.76 -8.74 16
3 C 0.29 4.60 12.50 180.02 2.25 6.85 16
4 N -0.54 -15.10 11.23 -191.51 -2.15 -17.25 16
5 C 0.01 0.37 6.92 40.01 0.28 0.65 16
6 C 0.22 4.62 8.02 133.93 1.07 5.69 16
7 N -0.48 -8.46 10.35 -192.83 -2.00 -10.46 16
8 C 0.14 1.69 11.14 84.73 0.94 2.63 16
9 C -0.13 -2.01 8.56 22.63 0.19 -1.82 16
10 C -0.06 -1.43 5.46 -19.75 -0.11 -1.54 16
11 C 0.57 18.09 7.48 86.76 0.65 18.74 16
12 O -0.57 -24.08 17.22 -3.89 -0.07 -24.14 16
13 N -0.61 -15.68 3.33 -815.30 -2.71 -18.39 16
14 C 0.09 1.43 5.90 86.73 0.51 1.94 16
15 C -0.12 -1.75 6.42 31.78 0.20 -1.54 16
16 C -0.09 -2.06 3.04 -9.40 -0.03 -2.09 16
17 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16
18 C -0.10 -2.93 4.84 30.60 0.15 -2.78 16
19 C 0.15 6.11 6.14 86.38 0.53 6.64 16
20 N -0.75 -39.44 5.60 -343.44 -1.92 -41.36 16
21 C -0.25 -14.62 9.99 84.03 0.84 -13.78 16
22 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16
23 C -0.07 -4.41 5.50 84.86 0.47 -3.95 16
24 N -0.97 -60.13 13.06 21.65 0.28 -59.85 16
25 Si 0.97 47.68 29.55 68.60 2.03 49.70 16
26 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16
27 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16
28 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16
29 C 0.11 3.12 5.73 86.86 0.50 3.62 16
30 H 0.09 0.17 8.14 -2.38 -0.02 0.16 16
31 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16
32 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16
33 H 0.27 1.09 8.06 -2.91 -0.02 1.07 16
34 H 0.22 0.48 8.06 -2.91 -0.02 0.45 16
35 H 0.18 1.50 6.02 -2.91 -0.02 1.48 16
36 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16
37 H 0.11 0.94 5.67 -2.39 -0.01 0.93 16
38 H 0.10 1.25 8.04 -2.39 -0.02 1.23 16
39 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16
40 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16
41 H 0.07 2.05 8.03 -2.39 -0.02 2.03 16
42 H 0.01 0.48 7.59 -2.38 -0.02 0.46 16
43 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16
44 H 0.38 20.61 7.67 -92.71 -0.71 19.90 16
45 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16
46 H 0.05 1.75 7.95 -2.38 -0.02 1.74 16
47 H 0.07 2.08 7.96 -2.39 -0.02 2.06 16
Total: -1.00 -92.87 390.01 1.87 -91.00
By element:
Atomic # 1 Polarization: 18.19 SS G_CDS: 0.29 Total: 18.48 kcal
Atomic # 6 Polarization: 11.13 SS G_CDS: 9.88 Total: 21.01 kcal
Atomic # 7 Polarization: -145.79 SS G_CDS: -10.26 Total: -156.04 kcal
Atomic # 8 Polarization: -24.08 SS G_CDS: -0.07 Total: -24.14 kcal
Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.70 kcal
Total: -92.87 1.87 -91.00 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001672862954.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 141.574 kcal
(2) G-P(sol) polarization free energy of solvation -92.869 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.705 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.999 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.575 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds