Wall clock time and date at job start Sat Apr 11 2020 06:57:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.34814 * 126.59433 * 2 1
4 4 C 1.36598 * 106.83775 * 180.10568 * 3 2 1
5 5 C 1.47527 * 125.77002 * 179.89589 * 4 3 2
6 6 O 1.21595 * 119.99591 * 359.71890 * 5 4 3
7 7 N 1.34778 * 120.00084 * 179.71761 * 5 4 3
8 8 C 1.46497 * 119.99736 * 180.02562 * 7 5 4
9 9 C 1.53006 * 109.46795 * 179.97438 * 8 7 5
10 10 C 1.53000 * 109.46846 * 179.97438 * 9 8 7
11 11 H 1.09002 * 109.47398 * 305.00335 * 10 9 8
12 12 C 1.52997 * 109.47060 * 185.00166 * 10 9 8
13 13 C 1.50698 * 109.47721 * 175.00208 * 12 10 9
14 14 C 1.38239 * 120.00185 * 269.73486 * 13 12 10
15 15 C 1.38230 * 120.00287 * 179.76220 * 14 13 12
16 16 C 1.38237 * 119.99484 * 0.50042 * 15 14 13
17 17 C 1.38238 * 120.00439 * 359.74708 * 16 15 14
18 18 C 1.38232 * 120.00028 * 89.99519 * 13 12 10
19 19 N 1.46500 * 109.47023 * 65.00406 * 10 9 8
20 20 C 1.36939 * 119.99917 * 59.99548 * 19 10 9
21 21 H 1.07997 * 119.99844 * 0.02562 * 20 19 10
22 22 C 1.38812 * 119.99540 * 179.97438 * 20 19 10
23 23 N 1.31616 * 120.00694 * 0.02562 * 22 20 19
24 24 Si 1.86800 * 119.99729 * 180.02562 * 22 20 19
25 25 H 1.48502 * 109.47496 * 90.00110 * 24 22 20
26 26 H 1.48503 * 109.47098 * 210.00245 * 24 22 20
27 27 H 1.48508 * 109.47255 * 330.00133 * 24 22 20
28 28 N 1.34407 * 108.46229 * 359.63253 * 4 3 2
29 29 N 1.28761 * 109.51859 * 0.22694 * 28 4 3
30 30 H 1.08993 * 109.47102 * 270.27493 * 1 2 3
31 31 H 1.08995 * 109.46977 * 30.27704 * 1 2 3
32 32 H 1.09001 * 109.47074 * 150.28032 * 1 2 3
33 33 H 1.07995 * 126.58456 * 359.96471 * 3 2 1
34 34 H 0.96995 * 119.99549 * 359.97438 * 7 5 4
35 35 H 1.09002 * 109.47354 * 59.99962 * 8 7 5
36 36 H 1.09001 * 109.47391 * 299.99649 * 8 7 5
37 37 H 1.09002 * 109.46824 * 60.00099 * 9 8 7
38 38 H 1.08991 * 109.47210 * 300.00183 * 9 8 7
39 39 H 1.09000 * 109.47325 * 295.00173 * 12 10 9
40 40 H 1.09008 * 109.47017 * 55.00082 * 12 10 9
41 41 H 1.08004 * 119.99638 * 359.97438 * 14 13 12
42 42 H 1.08001 * 120.00056 * 180.22520 * 15 14 13
43 43 H 1.08004 * 119.99559 * 179.72333 * 16 15 14
44 44 H 1.07997 * 120.00044 * 179.97438 * 17 16 15
45 45 H 1.08005 * 119.99909 * 0.02562 * 18 13 12
46 46 H 0.96996 * 119.99985 * 239.99363 * 19 10 9
47 47 H 0.96997 * 120.00620 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2687 1.0824 0.0000
4 6 3.5543 0.6207 -0.0024
5 6 4.7705 1.4557 -0.0055
6 8 4.6755 2.6679 -0.0112
7 7 5.9867 0.8749 -0.0019
8 6 7.1943 1.7042 -0.0044
9 6 8.4313 0.8037 0.0012
10 6 9.6926 1.6698 -0.0020
11 1 9.6592 2.3572 -0.8473
12 6 10.9265 0.7733 -0.1222
13 6 12.1598 1.6301 -0.2489
14 6 12.6093 2.0141 -1.4985
15 6 13.7376 2.8041 -1.6145
16 6 14.4224 3.2016 -0.4813
17 6 13.9759 2.8133 0.7680
18 6 12.8446 2.0276 0.8842
19 7 9.7637 2.4336 1.2461
20 6 9.8150 1.7786 2.4476
21 1 9.8036 0.6991 2.4751
22 6 9.8829 2.5024 3.6302
23 7 9.8974 3.8181 3.5967
24 14 9.9537 1.6091 5.2692
25 1 11.3707 1.3552 5.6338
26 1 9.3152 2.4457 6.3169
27 1 9.2314 0.3161 5.1598
28 7 3.5239 -0.7230 0.0043
29 7 2.3009 -1.1257 0.0060
30 1 -0.3633 0.0049 1.0276
31 1 -0.3633 0.8875 -0.5181
32 1 -0.3633 -0.8925 -0.5095
33 1 1.9562 2.1161 -0.0005
34 1 6.0623 -0.0921 0.0030
35 1 7.2022 2.3373 0.8829
36 1 7.2039 2.3296 -0.8971
37 1 8.4236 0.1703 -0.8859
38 1 8.4216 0.1786 0.8940
39 1 11.0088 0.1473 0.7663
40 1 10.8314 0.1406 -1.0048
41 1 12.0768 1.6996 -2.3840
42 1 14.0867 3.1071 -2.5906
43 1 15.3066 3.8151 -0.5722
44 1 14.5112 3.1235 1.6532
45 1 12.4960 1.7237 1.8602
46 1 9.7744 3.4032 1.2214
47 1 9.9444 4.3238 4.4231
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001755722106.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:34
Heat of formation + Delta-G solvation = 92.786553 kcal
Electronic energy + Delta-G solvation = -28850.810285 eV
Core-core repulsion = 24842.902740 eV
Total energy + Delta-G solvation = -4007.907545 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-42.32879 -39.15204 -38.74410 -36.51213 -34.92650 -34.28830 -32.43009 -31.34582
-30.81826 -30.26401 -29.17996 -28.10966 -26.92039 -24.32393 -23.83550 -22.55578
-22.24786 -21.93031 -20.65487 -20.42779 -19.43489 -18.13975 -17.07370 -16.46086
-16.20446 -16.09307 -15.72871 -15.37586 -14.82388 -14.73545 -14.54798 -14.31268
-14.00565 -13.95580 -13.57420 -13.44207 -13.17992 -12.90368 -12.82207 -12.73037
-12.33358 -12.30664 -11.61610 -11.50581 -11.36398 -11.28439 -10.93501 -10.85797
-10.69522 -10.61388 -10.44140 -10.33211 -10.30558 -9.93793 -9.74526 -9.51875
-9.45181 -8.90521 -8.65136 -8.30665 -8.02992 -6.91615 -5.72823 -3.01134
0.95578 1.66457 1.81353 1.95699 2.04047 3.35631 3.43544 3.44461
3.50165 3.51652 4.08960 4.12623 4.40708 4.56709 4.61635 4.64815
4.84023 4.86925 5.15391 5.36238 5.38426 5.47104 5.51451 5.57330
5.62725 5.65983 5.75382 5.89061 6.05516 6.08011 6.09194 6.17254
6.20802 6.29441 6.43440 6.48452 6.57899 6.71862 6.75399 6.79833
6.88541 6.98854 7.02905 7.17615 7.41443 7.63132 7.66767 7.72962
7.89069 8.40810 8.44186 9.56440 10.13921 10.48887 11.49004
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.011861 B = 0.002558 C = 0.002241
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2360.081516 B =10941.752381 C =12488.919762
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.088 3.912
2 N -0.367 5.367
3 C 0.091 3.909
4 C -0.095 4.095
5 C 0.598 3.402
6 O -0.540 6.540
7 N -0.708 5.708
8 C 0.127 3.873
9 C -0.140 4.140
10 C 0.187 3.813
11 H 0.055 0.945
12 C -0.094 4.094
13 C -0.056 4.056
14 C -0.130 4.130
15 C -0.133 4.133
16 C -0.137 4.137
17 C -0.124 4.124
18 C -0.079 4.079
19 N -0.715 5.715
20 C -0.232 4.232
21 H 0.070 0.930
22 C -0.007 4.007
23 N -0.926 5.926
24 Si 0.894 3.106
25 H -0.291 1.291
26 H -0.293 1.293
27 H -0.283 1.283
28 N -0.204 5.204
29 N -0.070 5.070
30 H 0.089 0.911
31 H 0.097 0.903
32 H 0.100 0.900
33 H 0.206 0.794
34 H 0.404 0.596
35 H 0.089 0.911
36 H 0.058 0.942
37 H 0.052 0.948
38 H 0.074 0.926
39 H 0.075 0.925
40 H 0.055 0.945
41 H 0.112 0.888
42 H 0.110 0.890
43 H 0.109 0.891
44 H 0.113 0.887
45 H 0.134 0.866
46 H 0.386 0.614
47 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.243 -6.289 -11.116 17.016
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.053 4.053
2 N -0.152 5.152
3 C -0.066 4.066
4 C -0.235 4.235
5 C 0.381 3.619
6 O -0.416 6.416
7 N -0.357 5.357
8 C 0.005 3.995
9 C -0.180 4.180
10 C 0.075 3.925
11 H 0.074 0.926
12 C -0.134 4.134
13 C -0.057 4.057
14 C -0.148 4.148
15 C -0.151 4.151
16 C -0.155 4.155
17 C -0.142 4.142
18 C -0.097 4.097
19 N -0.354 5.354
20 C -0.363 4.363
21 H 0.087 0.913
22 C -0.204 4.204
23 N -0.573 5.573
24 Si 0.726 3.274
25 H -0.219 1.219
26 H -0.220 1.220
27 H -0.209 1.209
28 N -0.078 5.078
29 N -0.050 5.050
30 H 0.108 0.892
31 H 0.116 0.884
32 H 0.119 0.881
33 H 0.222 0.778
34 H 0.239 0.761
35 H 0.107 0.893
36 H 0.076 0.924
37 H 0.070 0.930
38 H 0.092 0.908
39 H 0.093 0.907
40 H 0.073 0.927
41 H 0.130 0.870
42 H 0.128 0.872
43 H 0.127 0.873
44 H 0.131 0.869
45 H 0.151 0.849
46 H 0.219 0.781
47 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -11.289 -7.030 -10.956 17.231
hybrid contribution -0.216 0.544 1.121 1.265
sum -11.505 -6.486 -9.835 16.467
Atomic orbital electron populations
1.22178 0.72621 1.05698 1.04777 1.50364 1.09085 1.05768 1.50002
1.23395 0.90199 0.94986 0.98035 1.21657 0.94922 0.90315 1.16558
1.16735 0.81847 0.86312 0.77008 1.90823 1.86620 1.13021 1.51153
1.45905 1.05521 1.11069 1.73240 1.21441 0.81571 0.93529 1.02993
1.22274 0.95403 0.98873 1.01445 1.20058 0.89994 0.92188 0.90259
0.92645 1.21157 0.93581 0.97337 1.01300 1.19805 0.95683 0.97663
0.92508 1.20965 0.97116 0.99755 0.96949 1.20920 0.96668 0.99708
0.97811 1.20973 1.00208 1.01298 0.93018 1.21141 0.97425 0.98758
0.96889 1.21286 0.93132 0.95843 0.99441 1.42369 1.87652 1.05523
0.99905 1.19035 1.42410 0.90995 0.83905 0.91257 1.24656 1.03149
0.95269 0.97296 1.69649 1.57193 1.04200 1.26296 0.86392 0.77475
0.78631 0.84915 1.21872 1.21988 1.20877 1.74628 1.12806 1.10455
1.09891 1.81984 0.93540 1.06487 1.23022 0.89234 0.88398 0.88140
0.77773 0.76136 0.89254 0.92365 0.92975 0.90767 0.90672 0.92680
0.87041 0.87233 0.87284 0.86939 0.84855 0.78079 0.93627
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.31 11.51 59.85 0.69 1.00 16
2 N -0.37 -3.34 4.03 -67.86 -0.27 -3.62 16
3 C 0.09 0.93 11.31 -16.83 -0.19 0.74 16
4 C -0.09 -1.32 6.99 -83.55 -0.58 -1.90 16
5 C 0.60 9.82 7.82 -12.47 -0.10 9.72 16
6 O -0.54 -10.38 16.86 5.28 0.09 -10.29 16
7 N -0.71 -11.12 5.55 -61.35 -0.34 -11.46 16
8 C 0.13 2.19 5.56 -4.04 -0.02 2.17 16
9 C -0.14 -2.26 4.73 -26.73 -0.13 -2.38 16
10 C 0.19 3.34 2.67 -67.93 -0.18 3.16 16
11 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
12 C -0.09 -1.58 4.75 -27.89 -0.13 -1.71 16
13 C -0.06 -0.99 4.95 -104.62 -0.52 -1.51 16
14 C -0.13 -2.04 9.70 -39.58 -0.38 -2.42 16
15 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16
16 C -0.14 -2.13 10.05 -39.58 -0.40 -2.53 16
17 C -0.12 -2.16 10.05 -39.58 -0.40 -2.56 16
18 C -0.08 -1.51 9.31 -39.59 -0.37 -1.88 16
19 N -0.71 -16.03 4.13 -53.43 -0.22 -16.25 16
20 C -0.23 -5.77 7.88 -15.06 -0.12 -5.88 16
21 H 0.07 1.69 6.64 -52.49 -0.35 1.34 16
22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16
23 N -0.93 -26.83 13.06 55.49 0.72 -26.10 16
24 Si 0.89 21.78 29.55 -169.99 -5.02 16.76 16
25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16
27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
28 N -0.20 -2.90 12.04 32.85 0.40 -2.50 16
29 N -0.07 -0.89 13.78 60.35 0.83 -0.05 16
30 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16
31 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16
32 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16
33 H 0.21 1.48 8.06 -52.49 -0.42 1.05 16
34 H 0.40 5.66 8.16 -40.82 -0.33 5.33 16
35 H 0.09 1.90 7.75 -51.93 -0.40 1.50 16
36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
38 H 0.07 1.31 7.11 -51.93 -0.37 0.94 16
39 H 0.07 1.36 7.05 -51.93 -0.37 1.00 16
40 H 0.05 0.79 8.08 -51.92 -0.42 0.37 16
41 H 0.11 1.51 8.06 -52.48 -0.42 1.08 16
42 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16
43 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16
44 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16
45 H 0.13 2.86 7.37 -52.48 -0.39 2.47 16
46 H 0.39 9.74 8.03 -40.82 -0.33 9.41 16
47 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16
LS Contribution 400.81 15.07 6.04 6.04
Total: -1.00 -32.89 400.81 -7.84 -40.73
By element:
Atomic # 1 Polarization: 22.16 SS G_CDS: -6.74 Total: 15.42 kcal
Atomic # 6 Polarization: -5.34 SS G_CDS: -3.32 Total: -8.67 kcal
Atomic # 7 Polarization: -61.10 SS G_CDS: 1.12 Total: -59.99 kcal
Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal
Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -32.89 -7.84 -40.73 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001755722106.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 133.517 kcal
(2) G-P(sol) polarization free energy of solvation -32.889 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.628 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal
(6) G-S(sol) free energy of system = (1) + (5) 92.787 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds