Wall clock time and date at job start Sat Apr 11 2020 06:57:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.34814 * 126.59433 * 2 1
4 4 C 1.36598 * 106.83775 * 180.10568 * 3 2 1
5 5 C 1.47527 * 125.77002 * 179.89589 * 4 3 2
6 6 O 1.21595 * 119.99591 * 359.71890 * 5 4 3
7 7 N 1.34778 * 120.00084 * 179.71761 * 5 4 3
8 8 C 1.46497 * 119.99736 * 180.02562 * 7 5 4
9 9 C 1.53006 * 109.46795 * 179.97438 * 8 7 5
10 10 C 1.53000 * 109.46846 * 179.97438 * 9 8 7
11 11 H 1.09002 * 109.47398 * 305.00335 * 10 9 8
12 12 C 1.52997 * 109.47060 * 185.00166 * 10 9 8
13 13 C 1.50698 * 109.47721 * 175.00208 * 12 10 9
14 14 C 1.38239 * 120.00185 * 269.73486 * 13 12 10
15 15 C 1.38230 * 120.00287 * 179.76220 * 14 13 12
16 16 C 1.38237 * 119.99484 * 0.50042 * 15 14 13
17 17 C 1.38238 * 120.00439 * 359.74708 * 16 15 14
18 18 C 1.38232 * 120.00028 * 89.99519 * 13 12 10
19 19 N 1.46500 * 109.47023 * 65.00406 * 10 9 8
20 20 C 1.36939 * 119.99917 * 59.99548 * 19 10 9
21 21 H 1.07997 * 119.99844 * 0.02562 * 20 19 10
22 22 C 1.38812 * 119.99540 * 179.97438 * 20 19 10
23 23 N 1.31616 * 120.00694 * 0.02562 * 22 20 19
24 24 Si 1.86800 * 119.99729 * 180.02562 * 22 20 19
25 25 H 1.48502 * 109.47496 * 90.00110 * 24 22 20
26 26 H 1.48503 * 109.47098 * 210.00245 * 24 22 20
27 27 H 1.48508 * 109.47255 * 330.00133 * 24 22 20
28 28 N 1.34407 * 108.46229 * 359.63253 * 4 3 2
29 29 N 1.28761 * 109.51859 * 0.22694 * 28 4 3
30 30 H 1.08993 * 109.47102 * 270.27493 * 1 2 3
31 31 H 1.08995 * 109.46977 * 30.27704 * 1 2 3
32 32 H 1.09001 * 109.47074 * 150.28032 * 1 2 3
33 33 H 1.07995 * 126.58456 * 359.96471 * 3 2 1
34 34 H 0.96995 * 119.99549 * 359.97438 * 7 5 4
35 35 H 1.09002 * 109.47354 * 59.99962 * 8 7 5
36 36 H 1.09001 * 109.47391 * 299.99649 * 8 7 5
37 37 H 1.09002 * 109.46824 * 60.00099 * 9 8 7
38 38 H 1.08991 * 109.47210 * 300.00183 * 9 8 7
39 39 H 1.09000 * 109.47325 * 295.00173 * 12 10 9
40 40 H 1.09008 * 109.47017 * 55.00082 * 12 10 9
41 41 H 1.08004 * 119.99638 * 359.97438 * 14 13 12
42 42 H 1.08001 * 120.00056 * 180.22520 * 15 14 13
43 43 H 1.08004 * 119.99559 * 179.72333 * 16 15 14
44 44 H 1.07997 * 120.00044 * 179.97438 * 17 16 15
45 45 H 1.08005 * 119.99909 * 0.02562 * 18 13 12
46 46 H 0.96996 * 119.99985 * 239.99363 * 19 10 9
47 47 H 0.96997 * 120.00620 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2687 1.0824 0.0000
4 6 3.5543 0.6207 -0.0024
5 6 4.7705 1.4557 -0.0055
6 8 4.6755 2.6679 -0.0112
7 7 5.9867 0.8749 -0.0019
8 6 7.1943 1.7042 -0.0044
9 6 8.4313 0.8037 0.0012
10 6 9.6926 1.6698 -0.0020
11 1 9.6592 2.3572 -0.8473
12 6 10.9265 0.7733 -0.1222
13 6 12.1598 1.6301 -0.2489
14 6 12.6093 2.0141 -1.4985
15 6 13.7376 2.8041 -1.6145
16 6 14.4224 3.2016 -0.4813
17 6 13.9759 2.8133 0.7680
18 6 12.8446 2.0276 0.8842
19 7 9.7637 2.4336 1.2461
20 6 9.8150 1.7786 2.4476
21 1 9.8036 0.6991 2.4751
22 6 9.8829 2.5024 3.6302
23 7 9.8974 3.8181 3.5967
24 14 9.9537 1.6091 5.2692
25 1 11.3707 1.3552 5.6338
26 1 9.3152 2.4457 6.3169
27 1 9.2314 0.3161 5.1598
28 7 3.5239 -0.7230 0.0043
29 7 2.3009 -1.1257 0.0060
30 1 -0.3633 0.0049 1.0276
31 1 -0.3633 0.8875 -0.5181
32 1 -0.3633 -0.8925 -0.5095
33 1 1.9562 2.1161 -0.0005
34 1 6.0623 -0.0921 0.0030
35 1 7.2022 2.3373 0.8829
36 1 7.2039 2.3296 -0.8971
37 1 8.4236 0.1703 -0.8859
38 1 8.4216 0.1786 0.8940
39 1 11.0088 0.1473 0.7663
40 1 10.8314 0.1406 -1.0048
41 1 12.0768 1.6996 -2.3840
42 1 14.0867 3.1071 -2.5906
43 1 15.3066 3.8151 -0.5722
44 1 14.5112 3.1235 1.6532
45 1 12.4960 1.7237 1.8602
46 1 9.7744 3.4032 1.2214
47 1 9.9444 4.3238 4.4231
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001755722106.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:33
Heat of formation + Delta-G solvation = 70.233394 kcal
Electronic energy + Delta-G solvation = -28851.788263 eV
Core-core repulsion = 24842.902740 eV
Total energy + Delta-G solvation = -4008.885523 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.175 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-43.21700 -40.46329 -40.05431 -38.01943 -35.90299 -35.49084 -34.21872 -32.55202
-32.01712 -31.54999 -30.75375 -28.90860 -28.17262 -26.01765 -25.22214 -23.70609
-23.22783 -23.12573 -22.00794 -21.60825 -20.92845 -19.29072 -18.77541 -17.42268
-17.30987 -17.12975 -16.97516 -16.90394 -16.21574 -15.92686 -15.83463 -15.62300
-15.43814 -15.13748 -14.99922 -14.48948 -14.23624 -14.08312 -14.00746 -13.96633
-13.74870 -13.15278 -13.08789 -12.98742 -12.83964 -12.75126 -12.47432 -12.33508
-12.27761 -12.12859 -11.71958 -11.65342 -11.54482 -11.33331 -11.31104 -11.19418
-10.80688 -10.44004 -9.98463 -9.61130 -9.37476 -8.81752 -7.81107 -5.05183
0.13846 0.59509 0.67046 0.73929 1.17222 1.46048 1.47808 1.53461
2.16544 2.25658 2.62329 3.09726 3.19130 3.49452 3.54323 3.88833
3.96406 3.96560 4.03654 4.19728 4.24184 4.33043 4.37903 4.43552
4.46455 4.49868 4.65629 4.68363 4.69950 4.76328 4.82184 4.86155
4.92655 5.00850 5.13066 5.19767 5.32076 5.39870 5.44277 5.46183
5.49721 5.56112 5.67366 5.75492 5.84108 6.07087 6.36586 6.39931
6.45871 6.88836 7.16277 7.47454 8.24145 8.46373 9.42575
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.011861 B = 0.002558 C = 0.002241
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2360.081516 B =10941.752381 C =12488.919762
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.074 3.926
2 N -0.351 5.351
3 C 0.109 3.891
4 C -0.125 4.125
5 C 0.597 3.403
6 O -0.575 6.575
7 N -0.704 5.704
8 C 0.138 3.862
9 C -0.127 4.127
10 C 0.183 3.817
11 H 0.067 0.933
12 C -0.086 4.086
13 C -0.071 4.071
14 C -0.129 4.129
15 C -0.129 4.129
16 C -0.137 4.137
17 C -0.142 4.142
18 C -0.108 4.108
19 N -0.720 5.720
20 C -0.197 4.197
21 H 0.075 0.925
22 C -0.071 4.071
23 N -0.966 5.966
24 Si 0.943 3.057
25 H -0.293 1.293
26 H -0.307 1.307
27 H -0.273 1.273
28 N -0.225 5.225
29 N -0.091 5.091
30 H 0.106 0.894
31 H 0.130 0.870
32 H 0.111 0.889
33 H 0.236 0.764
34 H 0.413 0.587
35 H 0.043 0.957
36 H 0.062 0.938
37 H 0.091 0.909
38 H 0.058 0.942
39 H 0.055 0.945
40 H 0.091 0.909
41 H 0.141 0.859
42 H 0.145 0.855
43 H 0.136 0.864
44 H 0.112 0.888
45 H 0.096 0.904
46 H 0.369 0.631
47 H 0.243 0.757
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.416 -7.450 -13.980 20.128
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 N -0.135 5.135
3 C -0.050 4.050
4 C -0.265 4.265
5 C 0.382 3.618
6 O -0.454 6.454
7 N -0.353 5.353
8 C 0.015 3.985
9 C -0.166 4.166
10 C 0.073 3.927
11 H 0.085 0.915
12 C -0.125 4.125
13 C -0.072 4.072
14 C -0.146 4.146
15 C -0.147 4.147
16 C -0.155 4.155
17 C -0.161 4.161
18 C -0.126 4.126
19 N -0.358 5.358
20 C -0.329 4.329
21 H 0.093 0.907
22 C -0.263 4.263
23 N -0.618 5.618
24 Si 0.775 3.225
25 H -0.221 1.221
26 H -0.234 1.234
27 H -0.199 1.199
28 N -0.099 5.099
29 N -0.072 5.072
30 H 0.124 0.876
31 H 0.149 0.851
32 H 0.130 0.870
33 H 0.253 0.747
34 H 0.249 0.751
35 H 0.061 0.939
36 H 0.080 0.920
37 H 0.110 0.890
38 H 0.077 0.923
39 H 0.073 0.927
40 H 0.109 0.891
41 H 0.159 0.841
42 H 0.163 0.837
43 H 0.154 0.846
44 H 0.130 0.870
45 H 0.114 0.886
46 H 0.200 0.800
47 H 0.052 0.948
Dipole moment (debyes) X Y Z Total
from point charges -12.491 -8.302 -13.856 20.419
hybrid contribution 0.061 0.873 1.862 2.058
sum -12.430 -7.428 -11.994 18.803
Atomic orbital electron populations
1.22745 0.69160 1.07945 1.06587 1.50726 1.10761 1.04431 1.47603
1.23828 0.89104 0.96365 0.95670 1.21452 0.95115 0.90394 1.19580
1.17083 0.82629 0.86168 0.75937 1.90793 1.87223 1.14552 1.52880
1.45816 1.05106 1.11362 1.73043 1.21160 0.82864 0.93530 1.00942
1.22135 0.93657 0.98314 1.02536 1.20330 0.91327 0.92580 0.88434
0.91483 1.21059 0.92449 0.96963 1.02034 1.19930 0.95996 0.98288
0.92944 1.21297 0.97345 0.99128 0.96871 1.21376 0.95844 0.98338
0.99112 1.21308 1.00990 1.00929 0.92263 1.21283 0.97349 0.99139
0.98281 1.21123 0.94885 0.98014 0.98570 1.42477 1.87421 1.04951
1.00956 1.19267 1.37883 0.91116 0.84628 0.90709 1.25199 1.05451
0.95758 0.99897 1.69789 1.60739 1.05413 1.25865 0.85574 0.77098
0.77796 0.82020 1.22095 1.23419 1.19870 1.74587 1.13887 1.10679
1.10724 1.81882 0.93542 1.07984 1.23762 0.87554 0.85134 0.87013
0.74730 0.75069 0.93871 0.91952 0.89041 0.92314 0.92664 0.89076
0.84085 0.83690 0.84569 0.86964 0.88571 0.79979 0.94833
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.26 11.51 127.77 1.47 1.73 16
2 N -0.35 -5.53 4.03 -368.60 -1.49 -7.02 16
3 C 0.11 2.02 11.31 83.85 0.95 2.97 16
4 C -0.13 -3.39 6.99 40.82 0.29 -3.10 16
5 C 0.60 19.68 7.82 86.69 0.68 20.36 16
6 O -0.58 -22.44 16.86 -4.02 -0.07 -22.50 16
7 N -0.70 -22.06 5.55 -466.26 -2.59 -24.65 16
8 C 0.14 4.79 5.56 86.38 0.48 5.27 16
9 C -0.13 -3.93 4.73 30.60 0.14 -3.79 16
10 C 0.18 6.40 2.67 44.99 0.12 6.52 16
11 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16
12 C -0.09 -2.75 4.75 29.85 0.14 -2.61 16
13 C -0.07 -2.44 4.95 -19.87 -0.10 -2.54 16
14 C -0.13 -3.64 9.70 22.27 0.22 -3.42 16
15 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16
16 C -0.14 -3.98 10.05 22.27 0.22 -3.76 16
17 C -0.14 -5.02 10.05 22.27 0.22 -4.80 16
18 C -0.11 -4.24 9.31 22.27 0.21 -4.03 16
19 N -0.72 -33.21 4.13 -322.94 -1.33 -34.54 16
20 C -0.20 -10.07 7.88 84.03 0.66 -9.41 16
21 H 0.08 3.71 6.64 -2.91 -0.02 3.69 16
22 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16
23 N -0.97 -58.88 13.06 21.65 0.28 -58.60 16
24 Si 0.94 46.59 29.55 68.60 2.03 48.62 16
25 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16
26 H -0.31 -15.70 7.11 99.48 0.71 -15.00 16
27 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16
28 N -0.23 -6.27 12.04 -49.99 -0.60 -6.87 16
29 N -0.09 -2.19 13.78 37.02 0.51 -1.68 16
30 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16
31 H 0.13 -0.33 8.14 -2.39 -0.02 -0.35 16
32 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16
33 H 0.24 2.72 8.06 -2.91 -0.02 2.70 16
34 H 0.41 11.38 8.16 -92.71 -0.76 10.62 16
35 H 0.04 1.91 7.75 -2.39 -0.02 1.89 16
36 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16
37 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16
38 H 0.06 2.03 7.11 -2.39 -0.02 2.01 16
39 H 0.05 1.98 7.05 -2.39 -0.02 1.97 16
40 H 0.09 2.27 8.08 -2.38 -0.02 2.25 16
41 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16
42 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16
43 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16
44 H 0.11 3.79 8.06 -2.91 -0.02 3.77 16
45 H 0.10 4.42 7.37 -2.91 -0.02 4.40 16
46 H 0.37 19.43 8.03 -92.71 -0.74 18.69 16
47 H 0.24 14.73 8.31 -92.71 -0.77 13.96 16
Total: -1.00 -76.67 400.81 2.64 -74.03
By element:
Atomic # 1 Polarization: 41.04 SS G_CDS: -0.50 Total: 40.55 kcal
Atomic # 6 Polarization: -13.73 SS G_CDS: 6.39 Total: -7.33 kcal
Atomic # 7 Polarization: -128.15 SS G_CDS: -5.22 Total: -133.36 kcal
Atomic # 8 Polarization: -22.44 SS G_CDS: -0.07 Total: -22.50 kcal
Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal
Total: -76.67 2.64 -74.03 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001755722106.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 144.267 kcal
(2) G-P(sol) polarization free energy of solvation -76.673 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.594 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.034 kcal
(6) G-S(sol) free energy of system = (1) + (5) 70.233 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds