Wall clock time and date at job start Sat Apr 11 2020 06:57:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42903 * 114.00256 * 2 1
4 4 C 1.52993 * 109.47456 * 179.97438 * 3 2 1
5 5 H 1.09000 * 109.47060 * 54.73147 * 4 3 2
6 6 O 1.42902 * 109.47272 * 294.73518 * 4 3 2
7 7 C 1.42895 * 114.00085 * 149.99778 * 6 4 3
8 8 C 1.50694 * 109.47250 * 174.72928 * 4 3 2
9 9 O 1.21284 * 119.99807 * 111.31156 * 8 4 3
10 10 N 1.34775 * 120.00426 * 291.30972 * 8 4 3
11 11 C 1.46923 * 120.63330 * 174.80388 * 10 8 4
12 12 C 1.53200 * 108.89122 * 126.46353 * 11 10 8
13 13 C 1.53038 * 109.31693 * 54.56458 * 12 11 10
14 14 C 1.53043 * 109.53259 * 298.63681 * 13 12 11
15 15 H 1.08996 * 109.49861 * 301.40798 * 14 13 12
16 16 N 1.46901 * 109.49523 * 181.35011 * 14 13 12
17 17 C 1.46899 * 111.00322 * 84.99411 * 16 14 13
18 18 C 1.50705 * 109.47319 * 179.97438 * 17 16 14
19 19 O 1.21284 * 119.99871 * 0.02562 * 18 17 16
20 20 N 1.34776 * 119.99688 * 180.02562 * 18 17 16
21 21 C 1.37101 * 119.99378 * 180.02562 * 20 18 17
22 22 H 1.07995 * 120.00224 * 359.97438 * 21 20 18
23 23 C 1.38952 * 119.99655 * 180.02562 * 21 20 18
24 24 N 1.31411 * 120.00308 * 359.97438 * 23 21 20
25 25 Si 1.86797 * 120.00097 * 179.97438 * 23 21 20
26 26 H 1.48500 * 109.47057 * 59.99799 * 25 23 21
27 27 H 1.48491 * 109.47364 * 179.97438 * 25 23 21
28 28 H 1.48498 * 109.47130 * 300.00250 * 25 23 21
29 29 C 1.46971 * 120.65017 * 354.61710 * 10 8 4
30 30 H 1.08999 * 109.47031 * 300.00504 * 1 2 3
31 31 H 1.09008 * 109.47012 * 60.00102 * 1 2 3
32 32 H 1.08998 * 109.47456 * 179.97438 * 1 2 3
33 33 H 1.09001 * 109.46977 * 59.99513 * 3 2 1
34 34 H 1.08999 * 109.46889 * 300.00233 * 3 2 1
35 35 H 1.08998 * 109.47139 * 299.99669 * 7 6 4
36 36 H 1.09006 * 109.47151 * 59.99979 * 7 6 4
37 37 H 1.09004 * 109.47040 * 179.97438 * 7 6 4
38 38 H 1.08997 * 109.58776 * 6.60639 * 11 10 8
39 39 H 1.09002 * 109.58761 * 246.31361 * 11 10 8
40 40 H 1.08999 * 109.49449 * 174.51934 * 12 11 10
41 41 H 1.08994 * 109.49416 * 294.60873 * 12 11 10
42 42 H 1.09000 * 109.45646 * 58.64862 * 13 12 11
43 43 H 1.08998 * 109.46036 * 178.61403 * 13 12 11
44 44 H 1.00905 * 110.99790 * 321.04000 * 16 14 13
45 45 H 1.08996 * 109.47316 * 300.00424 * 17 16 14
46 46 H 1.09002 * 109.46745 * 60.00015 * 17 16 14
47 47 H 0.96996 * 120.00435 * 359.97438 * 20 18 17
48 48 H 0.96992 * 120.00491 * 179.97438 * 24 23 21
49 49 H 1.09002 * 109.46105 * 113.75728 * 29 10 8
50 50 H 1.08996 * 109.59297 * 353.40333 * 29 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 3.5354 1.1847 0.0006
5 1 3.8511 0.5643 -0.8382
6 8 3.9653 0.5853 1.2246
7 6 5.1686 -0.1765 1.1075
8 6 4.1480 2.5553 -0.1299
9 8 4.7499 3.0419 0.8039
10 7 4.0269 3.2405 -1.2841
11 6 4.5188 4.6209 -1.3905
12 6 5.4644 4.7193 -2.5917
13 6 4.7471 4.2097 -3.8438
14 6 4.3624 2.7410 -3.6510
15 1 5.2590 2.1525 -3.4571
16 7 3.7027 2.2435 -4.8657
17 6 4.6909 1.7895 -5.8532
18 6 3.9784 1.2868 -7.0824
19 8 2.7667 1.3054 -7.1311
20 7 4.6878 0.8166 -8.1274
21 6 4.0396 0.3597 -9.2458
22 1 2.9607 0.3763 -9.2892
23 6 4.7709 -0.1256 -10.3230
24 7 6.0838 -0.1463 -10.2700
25 14 3.8879 -0.7487 -11.8466
26 1 3.0741 0.3479 -12.4303
27 1 4.8868 -1.2082 -12.8446
28 1 3.0005 -1.8803 -11.4764
29 6 3.4042 2.6200 -2.4620
30 1 -0.3633 0.5139 0.8899
31 1 -0.3633 0.5139 -0.8901
32 1 -0.3634 -1.0276 -0.0005
33 1 1.6886 1.8464 0.8900
34 1 1.6886 1.8464 -0.8900
35 1 5.0196 -0.9830 0.3895
36 1 5.9763 0.4703 0.7651
37 1 5.4279 -0.5977 2.0789
38 1 5.0552 4.8888 -0.4802
39 1 3.6770 5.2988 -1.5317
40 1 5.7589 5.7585 -2.7386
41 1 6.3507 4.1122 -2.4076
42 1 3.8475 4.8015 -4.0131
43 1 5.4095 4.3017 -4.7046
44 1 3.0938 2.9451 -5.2597
45 1 5.3418 2.6206 -6.1244
46 1 5.2885 0.9845 -5.4254
47 1 5.6569 0.8020 -8.0885
48 1 6.5943 -0.4854 -11.0218
49 1 2.4703 3.1330 -2.6916
50 1 3.2051 1.5679 -2.2586
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001209544382.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:21
Heat of formation + Delta-G solvation = -152.287683 kcal
Electronic energy + Delta-G solvation = -31093.468038 eV
Core-core repulsion = 26735.331606 eV
Total energy + Delta-G solvation = -4358.136432 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 343.199 amu
Computer time = 1.75 seconds
Orbital eigenvalues (eV)
-40.85890 -38.90833 -38.25346 -37.77265 -37.04788 -35.04123 -33.89944 -33.14507
-31.30343 -30.91131 -29.99297 -27.08454 -26.63719 -26.24161 -25.64428 -24.09634
-23.74821 -22.31706 -21.02533 -19.68075 -19.18940 -17.99546 -17.95269 -17.18121
-16.85047 -16.27256 -16.02065 -15.92962 -15.50463 -15.37388 -14.99695 -14.93274
-14.82885 -14.53861 -14.25028 -14.02515 -13.90387 -13.83835 -13.37294 -13.24864
-13.09837 -12.85247 -12.51539 -12.21097 -12.06752 -11.97565 -11.65140 -11.57034
-11.46896 -11.46468 -11.21460 -11.09759 -11.02595 -10.95832 -10.74961 -10.47512
-10.25394 -9.97549 -9.55124 -9.54073 -9.02951 -8.51643 -8.15333 -8.00821
-6.45755 -3.86886 2.17332 2.49517 3.17112 3.23401 3.27430 3.43261
3.44604 3.85036 3.96555 4.18115 4.34545 4.47980 4.56439 4.59496
4.67182 4.68807 4.90027 4.96923 5.02944 5.05062 5.10572 5.14702
5.18056 5.20487 5.21459 5.22632 5.24487 5.34325 5.46873 5.49008
5.51216 5.52594 5.61788 5.64779 5.69050 5.84750 5.95311 5.99270
6.14984 6.21881 6.69609 6.81277 7.03459 7.06627 7.51054 7.51816
7.83725 8.01347 8.56215 9.13365 9.49307 10.00280 10.71817
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.012510 B = 0.002374 C = 0.002184
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2237.637825 B =11793.548598 C =12818.841630
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.380 6.380
3 C 0.069 3.931
4 C 0.075 3.925
5 H 0.099 0.901
6 O -0.351 6.351
7 C 0.029 3.971
8 C 0.499 3.501
9 O -0.522 6.522
10 N -0.609 5.609
11 C 0.109 3.891
12 C -0.129 4.129
13 C -0.153 4.153
14 C 0.074 3.926
15 H 0.082 0.918
16 N -0.661 5.661
17 C 0.052 3.948
18 C 0.440 3.560
19 O -0.583 6.583
20 N -0.562 5.562
21 C -0.301 4.301
22 H 0.103 0.897
23 C 0.023 3.977
24 N -0.902 5.902
25 Si 0.931 3.069
26 H -0.274 1.274
27 H -0.284 1.284
28 H -0.273 1.273
29 C 0.112 3.888
30 H 0.041 0.959
31 H 0.045 0.955
32 H 0.089 0.911
33 H 0.063 0.937
34 H 0.073 0.927
35 H 0.047 0.953
36 H 0.042 0.958
37 H 0.090 0.910
38 H 0.092 0.908
39 H 0.070 0.930
40 H 0.076 0.924
41 H 0.067 0.933
42 H 0.069 0.931
43 H 0.069 0.931
44 H 0.353 0.647
45 H 0.045 0.955
46 H 0.086 0.914
47 H 0.392 0.608
48 H 0.272 0.728
49 H 0.077 0.923
50 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.493 6.431 19.690 20.863
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.299 6.299
3 C -0.008 4.008
4 C 0.013 3.987
5 H 0.116 0.884
6 O -0.268 6.268
7 C -0.067 4.067
8 C 0.286 3.714
9 O -0.397 6.397
10 N -0.345 5.345
11 C -0.013 4.013
12 C -0.168 4.168
13 C -0.193 4.193
14 C -0.037 4.037
15 H 0.100 0.900
16 N -0.292 5.292
17 C -0.080 4.080
18 C 0.225 3.775
19 O -0.468 6.468
20 N -0.199 5.199
21 C -0.430 4.430
22 H 0.121 0.879
23 C -0.179 4.179
24 N -0.543 5.543
25 Si 0.758 3.242
26 H -0.199 1.199
27 H -0.210 1.210
28 H -0.198 1.198
29 C -0.011 4.011
30 H 0.060 0.940
31 H 0.064 0.936
32 H 0.108 0.892
33 H 0.082 0.918
34 H 0.091 0.909
35 H 0.066 0.934
36 H 0.061 0.939
37 H 0.109 0.891
38 H 0.111 0.889
39 H 0.088 0.912
40 H 0.095 0.905
41 H 0.086 0.914
42 H 0.088 0.912
43 H 0.088 0.912
44 H 0.173 0.827
45 H 0.063 0.937
46 H 0.104 0.896
47 H 0.225 0.775
48 H 0.082 0.918
49 H 0.095 0.905
50 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -2.948 5.825 20.451 21.468
hybrid contribution 0.696 0.707 -1.530 1.824
sum -2.252 6.532 18.921 20.143
Atomic orbital electron populations
1.22792 0.80345 1.03197 1.00182 1.87911 1.20140 1.26365 1.95454
1.22492 0.90122 0.86266 1.01927 1.21996 0.94348 0.92000 0.90331
0.88369 1.88004 1.42264 1.67140 1.29391 1.22881 0.86334 0.94445
1.03035 1.21101 0.80537 0.87446 0.82316 1.90704 1.41296 1.69179
1.38562 1.48223 1.60213 1.14611 1.11423 1.21643 0.97931 0.81906
0.99808 1.21855 0.98607 1.01997 0.94347 1.22336 1.01293 0.97340
0.98287 1.21887 0.96810 0.93968 0.91056 0.90004 1.60028 1.19979
1.43756 1.05475 1.21694 0.93927 0.99750 0.92669 1.19762 0.88184
0.84851 0.84694 1.90523 1.13748 1.60492 1.82015 1.41855 1.09143
1.54954 1.13918 1.19654 0.93663 1.37730 0.91995 0.87937 1.25265
0.95492 0.97562 0.99540 1.69596 1.05025 1.46731 1.32921 0.85915
0.78632 0.79295 0.80379 1.19906 1.20965 1.19829 1.21872 0.95941
0.99341 0.83989 0.93994 0.93595 0.89234 0.91842 0.90864 0.93436
0.93891 0.89112 0.88937 0.91222 0.90528 0.91400 0.91231 0.91202
0.82736 0.93697 0.89591 0.77466 0.91768 0.90457 0.88788
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.25 11.01 101.05 1.11 1.36 16
2 O -0.38 -4.24 10.67 -39.80 -0.42 -4.66 16
3 C 0.07 0.70 5.25 37.15 0.20 0.89 16
4 C 0.08 0.84 1.95 -27.89 -0.05 0.78 16
5 H 0.10 1.01 6.62 -51.93 -0.34 0.67 16
6 O -0.35 -4.48 9.87 -59.53 -0.59 -5.06 16
7 C 0.03 0.29 10.81 101.05 1.09 1.39 16
8 C 0.50 6.01 7.00 -10.99 -0.08 5.93 16
9 O -0.52 -7.99 15.94 -14.20 -0.23 -8.21 16
10 N -0.61 -6.06 2.98 -172.74 -0.51 -6.57 16
11 C 0.11 0.97 6.44 -3.71 -0.02 0.94 16
12 C -0.13 -1.06 6.08 -26.61 -0.16 -1.22 16
13 C -0.15 -1.41 5.14 -26.69 -0.14 -1.54 16
14 C 0.07 0.79 2.62 -67.59 -0.18 0.61 16
15 H 0.08 0.91 7.80 -51.93 -0.41 0.50 16
16 N -0.66 -9.30 5.88 -107.87 -0.63 -9.93 16
17 C 0.05 0.85 5.97 -4.97 -0.03 0.82 16
18 C 0.44 9.89 7.82 -10.98 -0.09 9.80 16
19 O -0.58 -15.15 15.78 5.55 0.09 -15.07 16
20 N -0.56 -13.80 5.29 -10.96 -0.06 -13.86 16
21 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16
22 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16
23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16
24 N -0.90 -24.10 13.05 55.50 0.72 -23.38 16
25 Si 0.93 20.68 29.55 -169.99 -5.02 15.65 16
26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16
27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16
28 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16
29 C 0.11 1.07 4.60 -3.69 -0.02 1.05 16
30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16
31 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16
32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16
33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
34 H 0.07 0.62 6.28 -51.93 -0.33 0.30 16
35 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16
36 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16
37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16
38 H 0.09 0.92 7.00 -51.93 -0.36 0.56 16
39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16
41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
43 H 0.07 0.69 7.43 -51.93 -0.39 0.30 16
44 H 0.35 5.12 8.18 -39.29 -0.32 4.80 16
45 H 0.05 0.65 7.41 -51.93 -0.39 0.27 16
46 H 0.09 1.30 8.06 -51.93 -0.42 0.88 16
47 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16
48 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16
49 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16
50 H 0.09 0.92 5.16 -51.93 -0.27 0.65 16
LS Contribution 405.15 15.07 6.11 6.11
Total: -1.00 -33.46 405.15 -7.28 -40.74
By element:
Atomic # 1 Polarization: 19.40 SS G_CDS: -8.12 Total: 11.28 kcal
Atomic # 6 Polarization: 11.58 SS G_CDS: 1.40 Total: 12.98 kcal
Atomic # 7 Polarization: -53.26 SS G_CDS: -0.48 Total: -53.75 kcal
Atomic # 8 Polarization: -31.86 SS G_CDS: -1.15 Total: -33.01 kcal
Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal
Total LS contribution 6.11 Total: 6.11 kcal
Total: -33.46 -7.28 -40.74 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001209544382.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -111.549 kcal
(2) G-P(sol) polarization free energy of solvation -33.463 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.012 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.739 kcal
(6) G-S(sol) free energy of system = (1) + (5) -152.288 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.75 seconds