Wall clock time and date at job start Sat Apr 11 2020 06:57:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42903 * 114.00256 * 2 1
4 4 C 1.52993 * 109.47456 * 179.97438 * 3 2 1
5 5 H 1.09000 * 109.47060 * 54.73147 * 4 3 2
6 6 O 1.42902 * 109.47272 * 294.73518 * 4 3 2
7 7 C 1.42895 * 114.00085 * 149.99778 * 6 4 3
8 8 C 1.50694 * 109.47250 * 174.72928 * 4 3 2
9 9 O 1.21284 * 119.99807 * 111.31156 * 8 4 3
10 10 N 1.34775 * 120.00426 * 291.30972 * 8 4 3
11 11 C 1.46923 * 120.63330 * 174.80388 * 10 8 4
12 12 C 1.53200 * 108.89122 * 126.46353 * 11 10 8
13 13 C 1.53038 * 109.31693 * 54.56458 * 12 11 10
14 14 C 1.53043 * 109.53259 * 298.63681 * 13 12 11
15 15 H 1.08996 * 109.49861 * 301.40798 * 14 13 12
16 16 N 1.46901 * 109.49523 * 181.35011 * 14 13 12
17 17 C 1.46899 * 111.00322 * 84.99411 * 16 14 13
18 18 C 1.50705 * 109.47319 * 179.97438 * 17 16 14
19 19 O 1.21284 * 119.99871 * 0.02562 * 18 17 16
20 20 N 1.34776 * 119.99688 * 180.02562 * 18 17 16
21 21 C 1.37101 * 119.99378 * 180.02562 * 20 18 17
22 22 H 1.07995 * 120.00224 * 359.97438 * 21 20 18
23 23 C 1.38952 * 119.99655 * 180.02562 * 21 20 18
24 24 N 1.31411 * 120.00308 * 359.97438 * 23 21 20
25 25 Si 1.86797 * 120.00097 * 179.97438 * 23 21 20
26 26 H 1.48500 * 109.47057 * 59.99799 * 25 23 21
27 27 H 1.48491 * 109.47364 * 179.97438 * 25 23 21
28 28 H 1.48498 * 109.47130 * 300.00250 * 25 23 21
29 29 C 1.46971 * 120.65017 * 354.61710 * 10 8 4
30 30 H 1.08999 * 109.47031 * 300.00504 * 1 2 3
31 31 H 1.09008 * 109.47012 * 60.00102 * 1 2 3
32 32 H 1.08998 * 109.47456 * 179.97438 * 1 2 3
33 33 H 1.09001 * 109.46977 * 59.99513 * 3 2 1
34 34 H 1.08999 * 109.46889 * 300.00233 * 3 2 1
35 35 H 1.08998 * 109.47139 * 299.99669 * 7 6 4
36 36 H 1.09006 * 109.47151 * 59.99979 * 7 6 4
37 37 H 1.09004 * 109.47040 * 179.97438 * 7 6 4
38 38 H 1.08997 * 109.58776 * 6.60639 * 11 10 8
39 39 H 1.09002 * 109.58761 * 246.31361 * 11 10 8
40 40 H 1.08999 * 109.49449 * 174.51934 * 12 11 10
41 41 H 1.08994 * 109.49416 * 294.60873 * 12 11 10
42 42 H 1.09000 * 109.45646 * 58.64862 * 13 12 11
43 43 H 1.08998 * 109.46036 * 178.61403 * 13 12 11
44 44 H 1.00905 * 110.99790 * 321.04000 * 16 14 13
45 45 H 1.08996 * 109.47316 * 300.00424 * 17 16 14
46 46 H 1.09002 * 109.46745 * 60.00015 * 17 16 14
47 47 H 0.96996 * 120.00435 * 359.97438 * 20 18 17
48 48 H 0.96992 * 120.00491 * 179.97438 * 24 23 21
49 49 H 1.09002 * 109.46105 * 113.75728 * 29 10 8
50 50 H 1.08996 * 109.59297 * 353.40333 * 29 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 3.5354 1.1847 0.0006
5 1 3.8511 0.5643 -0.8382
6 8 3.9653 0.5853 1.2246
7 6 5.1686 -0.1765 1.1075
8 6 4.1480 2.5553 -0.1299
9 8 4.7499 3.0419 0.8039
10 7 4.0269 3.2405 -1.2841
11 6 4.5188 4.6209 -1.3905
12 6 5.4644 4.7193 -2.5917
13 6 4.7471 4.2097 -3.8438
14 6 4.3624 2.7410 -3.6510
15 1 5.2590 2.1525 -3.4571
16 7 3.7027 2.2435 -4.8657
17 6 4.6909 1.7895 -5.8532
18 6 3.9784 1.2868 -7.0824
19 8 2.7667 1.3054 -7.1311
20 7 4.6878 0.8166 -8.1274
21 6 4.0396 0.3597 -9.2458
22 1 2.9607 0.3763 -9.2892
23 6 4.7709 -0.1256 -10.3230
24 7 6.0838 -0.1463 -10.2700
25 14 3.8879 -0.7487 -11.8466
26 1 3.0741 0.3479 -12.4303
27 1 4.8868 -1.2082 -12.8446
28 1 3.0005 -1.8803 -11.4764
29 6 3.4042 2.6200 -2.4620
30 1 -0.3633 0.5139 0.8899
31 1 -0.3633 0.5139 -0.8901
32 1 -0.3634 -1.0276 -0.0005
33 1 1.6886 1.8464 0.8900
34 1 1.6886 1.8464 -0.8900
35 1 5.0196 -0.9830 0.3895
36 1 5.9763 0.4703 0.7651
37 1 5.4279 -0.5977 2.0789
38 1 5.0552 4.8888 -0.4802
39 1 3.6770 5.2988 -1.5317
40 1 5.7589 5.7585 -2.7386
41 1 6.3507 4.1122 -2.4076
42 1 3.8475 4.8015 -4.0131
43 1 5.4095 4.3017 -4.7046
44 1 3.0938 2.9451 -5.2597
45 1 5.3418 2.6206 -6.1244
46 1 5.2885 0.9845 -5.4254
47 1 5.6569 0.8020 -8.0885
48 1 6.5943 -0.4854 -11.0218
49 1 2.4703 3.1330 -2.6916
50 1 3.2051 1.5679 -2.2586
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001209544382.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:57:20
Heat of formation + Delta-G solvation = -177.871658 kcal
Electronic energy + Delta-G solvation = -31094.577442 eV
Core-core repulsion = 26735.331606 eV
Total energy + Delta-G solvation = -4359.245837 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 343.199 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-41.74031 -40.23756 -39.44358 -38.74247 -37.95559 -36.28439 -35.69240 -33.97488
-33.25105 -31.75708 -31.01360 -27.89880 -27.77043 -27.35058 -26.40824 -25.72777
-24.53902 -23.17936 -21.87883 -21.16658 -20.31260 -19.86550 -18.84055 -18.13053
-17.85648 -17.53413 -16.91650 -16.82067 -16.70058 -16.36556 -16.23512 -16.07334
-15.86611 -15.67275 -15.48892 -15.21747 -15.02973 -14.86537 -14.53116 -14.18374
-14.00262 -13.82220 -13.65182 -13.45775 -13.30172 -13.17453 -12.87071 -12.78270
-12.42766 -12.41832 -12.38457 -12.20147 -12.12328 -12.02680 -11.83499 -11.77769
-11.62498 -11.47879 -10.71173 -10.46396 -10.35210 -9.99938 -9.84407 -9.27841
-8.45281 -5.93806 1.26576 1.40967 1.43221 1.53605 1.65676 2.07526
2.30112 2.62303 2.66992 2.93311 3.22445 3.40942 3.54935 3.72240
3.77061 3.81954 3.87232 3.96576 4.13343 4.22113 4.27986 4.31921
4.32075 4.42900 4.47329 4.48043 4.51350 4.52535 4.57717 4.59523
4.61200 4.76104 4.78194 4.81189 4.86401 4.89471 4.97291 5.12624
5.27681 5.38685 5.42512 5.87542 5.88329 6.08348 6.10380 6.17698
6.40959 6.61418 6.94219 7.14213 7.58395 8.13196 8.71851
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.012510 B = 0.002374 C = 0.002184
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2237.637825 B =11793.548598 C =12818.841630
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.403 6.403
3 C 0.072 3.928
4 C 0.074 3.926
5 H 0.106 0.894
6 O -0.375 6.375
7 C 0.026 3.974
8 C 0.501 3.499
9 O -0.560 6.560
10 N -0.600 5.600
11 C 0.106 3.894
12 C -0.121 4.121
13 C -0.148 4.148
14 C 0.078 3.922
15 H 0.080 0.920
16 N -0.669 5.669
17 C 0.068 3.932
18 C 0.439 3.561
19 O -0.620 6.620
20 N -0.574 5.574
21 C -0.333 4.333
22 H 0.080 0.920
23 C -0.013 4.013
24 N -0.921 5.921
25 Si 0.991 3.009
26 H -0.271 1.271
27 H -0.272 1.272
28 H -0.272 1.272
29 C 0.115 3.885
30 H 0.051 0.949
31 H 0.054 0.946
32 H 0.098 0.902
33 H 0.061 0.939
34 H 0.089 0.911
35 H 0.058 0.942
36 H 0.037 0.963
37 H 0.104 0.896
38 H 0.081 0.919
39 H 0.088 0.912
40 H 0.095 0.905
41 H 0.059 0.941
42 H 0.078 0.922
43 H 0.066 0.934
44 H 0.350 0.650
45 H 0.068 0.932
46 H 0.101 0.899
47 H 0.396 0.604
48 H 0.277 0.723
49 H 0.091 0.909
50 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.608 6.937 19.526 20.885
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.322 6.322
3 C -0.005 4.005
4 C 0.012 3.988
5 H 0.123 0.877
6 O -0.292 6.292
7 C -0.070 4.070
8 C 0.288 3.712
9 O -0.439 6.439
10 N -0.334 5.334
11 C -0.016 4.016
12 C -0.159 4.159
13 C -0.187 4.187
14 C -0.032 4.032
15 H 0.098 0.902
16 N -0.301 5.301
17 C -0.065 4.065
18 C 0.227 3.773
19 O -0.507 6.507
20 N -0.211 5.211
21 C -0.463 4.463
22 H 0.098 0.902
23 C -0.212 4.212
24 N -0.562 5.562
25 Si 0.815 3.185
26 H -0.196 1.196
27 H -0.197 1.197
28 H -0.197 1.197
29 C -0.008 4.008
30 H 0.070 0.930
31 H 0.073 0.927
32 H 0.116 0.884
33 H 0.079 0.921
34 H 0.107 0.893
35 H 0.076 0.924
36 H 0.056 0.944
37 H 0.122 0.878
38 H 0.099 0.901
39 H 0.106 0.894
40 H 0.113 0.887
41 H 0.078 0.922
42 H 0.097 0.903
43 H 0.085 0.915
44 H 0.170 0.830
45 H 0.086 0.914
46 H 0.119 0.881
47 H 0.230 0.770
48 H 0.086 0.914
49 H 0.109 0.891
50 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -3.051 6.344 20.284 21.471
hybrid contribution 0.704 0.571 -1.427 1.691
sum -2.347 6.915 18.857 20.222
Atomic orbital electron populations
1.22972 0.78910 1.04138 1.01079 1.87871 1.21803 1.26932 1.95620
1.22504 0.89373 0.86133 1.02504 1.22093 0.95078 0.91523 0.90113
0.87672 1.87965 1.43204 1.67596 1.30465 1.23013 0.85386 0.94381
1.04224 1.21248 0.80007 0.87641 0.82284 1.90685 1.43147 1.70107
1.39924 1.48225 1.59439 1.14899 1.10876 1.21777 0.98712 0.81437
0.99628 1.21793 0.97854 1.02946 0.93343 1.22274 1.01707 0.96187
0.98546 1.21885 0.96675 0.94950 0.89729 0.90202 1.59981 1.19929
1.44448 1.05753 1.21524 0.93829 1.00865 0.90257 1.20847 0.87962
0.82915 0.85621 1.90493 1.15720 1.61491 1.82974 1.41935 1.09321
1.55765 1.14123 1.19632 0.93030 1.39731 0.93863 0.90181 1.26013
0.96224 0.97204 1.01792 1.69659 1.05865 1.46906 1.33800 0.85017
0.77780 0.78652 0.77099 1.19624 1.19698 1.19719 1.21864 0.96107
0.99585 0.83255 0.93027 0.92749 0.88372 0.92123 0.89323 0.92379
0.94447 0.87765 0.90101 0.89373 0.88677 0.92232 0.90348 0.91496
0.82986 0.91434 0.88078 0.77040 0.91350 0.89089 0.88877
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.37 11.01 113.37 1.25 1.62 16
2 O -0.40 -8.62 10.67 -144.61 -1.54 -10.17 16
3 C 0.07 1.38 5.25 71.98 0.38 1.76 16
4 C 0.07 1.60 1.95 29.84 0.06 1.66 16
5 H 0.11 2.08 6.62 -2.39 -0.02 2.06 16
6 O -0.37 -9.49 9.87 -125.75 -1.24 -10.73 16
7 C 0.03 0.50 10.81 113.37 1.23 1.73 16
8 C 0.50 11.71 7.00 87.66 0.61 12.32 16
9 O -0.56 -17.15 15.94 15.85 0.25 -16.90 16
10 N -0.60 -10.99 2.98 -818.81 -2.44 -13.43 16
11 C 0.11 1.67 6.44 86.37 0.56 2.23 16
12 C -0.12 -1.68 6.08 30.67 0.19 -1.49 16
13 C -0.15 -2.32 5.14 30.62 0.16 -2.16 16
14 C 0.08 1.49 2.62 44.99 0.12 1.61 16
15 H 0.08 1.59 7.80 -2.39 -0.02 1.57 16
16 N -0.67 -17.59 5.88 -495.18 -2.91 -20.50 16
17 C 0.07 2.07 5.97 85.56 0.51 2.58 16
18 C 0.44 19.62 7.82 87.66 0.69 20.31 16
19 O -0.62 -32.42 15.78 -3.04 -0.05 -32.47 16
20 N -0.57 -28.33 5.29 -306.99 -1.62 -29.96 16
21 C -0.33 -18.40 9.68 84.04 0.81 -17.59 16
22 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16
23 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16
24 N -0.92 -48.84 13.05 21.66 0.28 -48.56 16
25 Si 0.99 42.03 29.55 68.60 2.03 44.06 16
26 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16
27 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16
28 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16
29 C 0.11 1.95 4.60 86.35 0.40 2.35 16
30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16
31 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16
32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16
33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16
34 H 0.09 1.37 6.28 -2.39 -0.02 1.35 16
35 H 0.06 0.98 8.08 -2.39 -0.02 0.96 16
36 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16
37 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16
38 H 0.08 1.53 7.00 -2.39 -0.02 1.51 16
39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16
40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16
41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16
42 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16
43 H 0.07 1.13 7.43 -2.39 -0.02 1.11 16
44 H 0.35 9.58 8.18 -89.69 -0.73 8.84 16
45 H 0.07 1.80 7.41 -2.39 -0.02 1.78 16
46 H 0.10 2.84 8.06 -2.39 -0.02 2.82 16
47 H 0.40 18.59 7.90 -92.71 -0.73 17.86 16
48 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16
49 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16
50 H 0.09 1.65 5.16 -2.39 -0.01 1.63 16
Total: -1.00 -72.38 405.15 -0.33 -72.71
By element:
Atomic # 1 Polarization: 39.74 SS G_CDS: -0.50 Total: 39.23 kcal
Atomic # 6 Polarization: 19.31 SS G_CDS: 7.42 Total: 26.72 kcal
Atomic # 7 Polarization: -105.76 SS G_CDS: -6.69 Total: -112.45 kcal
Atomic # 8 Polarization: -67.69 SS G_CDS: -2.58 Total: -70.27 kcal
Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal
Total: -72.38 -0.33 -72.71 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001209544382.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -105.162 kcal
(2) G-P(sol) polarization free energy of solvation -72.380 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.542 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.330 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.710 kcal
(6) G-S(sol) free energy of system = (1) + (5) -177.872 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds