Wall clock time and date at job start Sat Apr 11 2020 07:02:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09003 * 109.47412 * 2 1
4 4 C 1.53000 * 109.47214 * 120.00230 * 2 1 3
5 5 C 1.53005 * 109.47064 * 185.00070 * 4 2 1
6 6 N 1.46501 * 109.47290 * 179.97438 * 5 4 2
7 7 C 1.34770 * 120.00013 * 179.97438 * 6 5 4
8 8 O 1.21281 * 119.99965 * 0.02562 * 7 6 5
9 9 C 1.50697 * 120.00148 * 180.02562 * 7 6 5
10 10 C 1.52995 * 109.47391 * 180.02562 * 9 7 6
11 11 O 1.42967 * 109.47161 * 175.00116 * 10 9 7
12 12 C 1.43095 * 113.77014 * 178.79211 * 11 10 9
13 13 C 1.53261 * 108.94358 * 302.02838 * 12 11 10
14 14 C 1.53259 * 108.84186 * 54.52606 * 13 12 11
15 15 O 1.42968 * 109.47265 * 294.99606 * 10 9 7
16 16 N 1.46910 * 109.47054 * 240.00152 * 2 1 3
17 17 C 1.46892 * 110.99941 * 84.99787 * 16 2 1
18 18 C 1.50701 * 109.47121 * 180.02562 * 17 16 2
19 19 O 1.21289 * 119.99857 * 0.02562 * 18 17 16
20 20 N 1.34781 * 120.00179 * 180.02562 * 18 17 16
21 21 C 1.37097 * 120.00013 * 179.97438 * 20 18 17
22 22 H 1.08002 * 120.00012 * 0.02562 * 21 20 18
23 23 C 1.38943 * 119.99660 * 179.97438 * 21 20 18
24 24 N 1.31415 * 119.99820 * 180.02562 * 23 21 20
25 25 Si 1.86800 * 120.00527 * 0.02562 * 23 21 20
26 26 H 1.48500 * 109.46986 * 89.99289 * 25 23 21
27 27 H 1.48499 * 109.47350 * 209.99617 * 25 23 21
28 28 H 1.48494 * 109.46845 * 329.99669 * 25 23 21
29 29 H 1.08999 * 109.46923 * 180.02562 * 1 2 3
30 30 H 1.09004 * 109.46898 * 299.99716 * 1 2 3
31 31 H 1.08996 * 109.47066 * 60.00131 * 1 2 3
32 32 H 1.08990 * 109.47545 * 65.00186 * 4 2 1
33 33 H 1.08999 * 109.47025 * 304.99384 * 4 2 1
34 34 H 1.09006 * 109.47165 * 59.99462 * 5 4 2
35 35 H 1.09008 * 109.47084 * 299.99960 * 5 4 2
36 36 H 0.96996 * 119.99559 * 0.02562 * 6 5 4
37 37 H 1.09006 * 109.47218 * 59.99878 * 9 7 6
38 38 H 1.09008 * 109.47128 * 300.00317 * 9 7 6
39 39 H 1.08998 * 109.47129 * 54.99933 * 10 9 7
40 40 H 1.08997 * 109.55621 * 61.86774 * 12 11 10
41 41 H 1.08999 * 109.55712 * 182.08124 * 12 11 10
42 42 H 1.08997 * 109.57207 * 174.33189 * 13 12 11
43 43 H 1.08998 * 109.57441 * 294.58821 * 13 12 11
44 44 H 1.08994 * 109.56239 * 65.31171 * 14 13 12
45 45 H 1.08999 * 109.55602 * 185.64189 * 14 13 12
46 46 H 1.00895 * 110.99437 * 208.95380 * 16 2 1
47 47 H 1.09002 * 109.47201 * 299.99877 * 17 16 2
48 48 H 1.09000 * 109.47200 * 60.00092 * 17 16 2
49 49 H 0.97004 * 119.99768 * 359.97438 * 20 18 17
50 50 H 0.96997 * 120.00653 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 3.5649 -0.6133 1.3136
6 7 4.0533 -1.3034 2.5101
7 6 5.3741 -1.3395 2.7752
8 8 6.1584 -0.8003 2.0236
9 6 5.8766 -2.0499 4.0056
10 6 7.4013 -1.9418 4.0701
11 8 7.8683 -2.5134 5.2945
12 6 9.2917 -2.4854 5.4382
13 6 9.9255 -3.2331 4.2601
14 6 9.4068 -2.6261 2.9519
15 8 7.9761 -2.6453 2.9662
16 7 2.0197 -0.6925 -1.1995
17 6 2.0824 0.2226 -2.3469
18 6 2.5872 -0.5218 -3.5561
19 8 2.8668 -1.6990 -3.4705
20 7 2.7281 0.1205 -4.7326
21 6 3.1879 -0.5566 -5.8325
22 1 3.4368 -1.6048 -5.7563
23 6 3.3326 0.1055 -7.0454
24 7 3.7728 -0.5436 -8.0999
25 14 2.9014 1.9182 -7.1775
26 1 4.1023 2.7363 -6.8710
27 1 2.4371 2.2175 -8.5559
28 1 1.8221 2.2419 -6.2103
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.7517 -1.7715 1.2056
33 1 1.6055 -0.2617 2.1369
34 1 3.8533 0.4370 1.3572
35 1 3.9995 -1.0728 0.4258
36 1 3.4259 -1.7350 3.1110
37 1 5.5879 -3.1001 3.9622
38 1 5.4422 -1.5902 4.8935
39 1 7.6934 -0.8927 4.0242
40 1 9.6376 -1.4518 5.4431
41 1 9.5736 -2.9689 6.3735
42 1 11.0099 -3.1325 4.3046
43 1 9.6543 -4.2877 4.3084
44 1 9.7571 -1.5979 2.8626
45 1 9.7711 -3.2121 2.1081
46 1 2.9173 -1.1205 -1.0288
47 1 1.0870 0.6162 -2.5525
48 1 2.7588 1.0462 -2.1183
49 1 2.5042 1.0618 -4.8011
50 1 3.8743 -0.0815 -8.9466
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001266139903.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:05
Heat of formation + Delta-G solvation = -167.863577 kcal
Electronic energy + Delta-G solvation = -29769.732109 eV
Core-core repulsion = 25410.920255 eV
Total energy + Delta-G solvation = -4358.811854 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 343.199 amu
Computer time = 1.31 seconds
Orbital eigenvalues (eV)
-40.54902 -39.56404 -38.60401 -37.26324 -35.98297 -34.85956 -33.90849 -33.58932
-31.81481 -31.49757 -30.64249 -28.80999 -26.57258 -26.33590 -24.63590 -23.72684
-22.78965 -21.53846 -20.91783 -20.18760 -19.33819 -18.33353 -18.01940 -17.13627
-16.97554 -16.45484 -16.19782 -16.01414 -15.79554 -15.39709 -15.11316 -15.08900
-15.00351 -14.70452 -13.95505 -13.83617 -13.69409 -13.64405 -13.34363 -13.24718
-13.08301 -12.63136 -12.44332 -12.25851 -12.14736 -11.95879 -11.90482 -11.70459
-11.50051 -11.47552 -11.35650 -11.30319 -11.14816 -10.83638 -10.56254 -10.37638
-10.07111 -9.97403 -9.93616 -9.53246 -9.28037 -8.53294 -8.16428 -8.10853
-6.27064 -3.78262 2.44758 2.63899 3.05643 3.09831 3.17665 3.31999
3.42240 3.78871 4.10062 4.14508 4.31656 4.33375 4.35728 4.51663
4.57962 4.68606 4.76301 4.84084 4.87675 4.90411 4.96490 4.99948
5.08379 5.25234 5.27742 5.31309 5.32695 5.37350 5.45585 5.50644
5.62942 5.64110 5.71723 5.79346 5.84450 5.90518 5.97461 6.01070
6.19647 6.28766 6.45571 6.82938 7.14798 7.23787 7.60529 7.62859
8.01446 8.18941 8.64109 8.99275 9.46721 9.87363 10.86159
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.011489 B = 0.001994 C = 0.001761
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2436.550069 B =14040.896403 C =15898.831800
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.086 3.914
3 H 0.045 0.955
4 C -0.132 4.132
5 C 0.113 3.887
6 N -0.729 5.729
7 C 0.517 3.483
8 O -0.524 6.524
9 C -0.128 4.128
10 C 0.263 3.737
11 O -0.397 6.397
12 C 0.060 3.940
13 C -0.194 4.194
14 C 0.058 3.942
15 O -0.376 6.376
16 N -0.666 5.666
17 C 0.047 3.953
18 C 0.450 3.550
19 O -0.564 6.564
20 N -0.591 5.591
21 C -0.303 4.303
22 H 0.120 0.880
23 C 0.040 3.960
24 N -0.882 5.882
25 Si 0.880 3.120
26 H -0.271 1.271
27 H -0.277 1.277
28 H -0.269 1.269
29 H 0.063 0.937
30 H 0.053 0.947
31 H 0.056 0.944
32 H 0.082 0.918
33 H 0.076 0.924
34 H 0.067 0.933
35 H 0.073 0.927
36 H 0.401 0.599
37 H 0.112 0.888
38 H 0.115 0.885
39 H 0.065 0.935
40 H 0.054 0.946
41 H 0.100 0.900
42 H 0.085 0.915
43 H 0.082 0.918
44 H 0.055 0.945
45 H 0.101 0.899
46 H 0.351 0.649
47 H 0.087 0.913
48 H 0.045 0.955
49 H 0.370 0.630
50 H 0.273 0.727
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.762 1.889 30.962 31.247
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.024 4.024
3 H 0.063 0.937
4 C -0.171 4.171
5 C -0.010 4.010
6 N -0.381 5.381
7 C 0.303 3.697
8 O -0.400 6.400
9 C -0.168 4.168
10 C 0.168 3.832
11 O -0.318 6.318
12 C -0.017 4.017
13 C -0.232 4.232
14 C -0.019 4.019
15 O -0.296 6.296
16 N -0.301 5.301
17 C -0.086 4.086
18 C 0.236 3.764
19 O -0.445 6.445
20 N -0.231 5.231
21 C -0.432 4.432
22 H 0.137 0.863
23 C -0.163 4.163
24 N -0.522 5.522
25 Si 0.706 3.294
26 H -0.197 1.197
27 H -0.202 1.202
28 H -0.195 1.195
29 H 0.083 0.917
30 H 0.072 0.928
31 H 0.075 0.925
32 H 0.101 0.899
33 H 0.094 0.906
34 H 0.085 0.915
35 H 0.092 0.908
36 H 0.235 0.765
37 H 0.130 0.870
38 H 0.133 0.867
39 H 0.082 0.918
40 H 0.073 0.927
41 H 0.118 0.882
42 H 0.104 0.896
43 H 0.101 0.899
44 H 0.073 0.927
45 H 0.119 0.881
46 H 0.173 0.827
47 H 0.105 0.895
48 H 0.063 0.937
49 H 0.203 0.797
50 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 3.748 1.067 30.044 30.296
hybrid contribution 0.543 1.983 0.134 2.061
sum 4.291 3.051 30.178 30.634
Atomic orbital electron populations
1.21788 0.94226 1.02606 1.01104 1.21461 0.96264 0.95767 0.88954
0.93750 1.21981 0.93694 1.02929 0.98449 1.21477 0.94223 0.97427
0.87915 1.45888 1.07301 1.57655 1.27299 1.20180 0.82355 0.80372
0.86841 1.90774 1.55001 1.45005 1.49184 1.21449 0.93205 1.04156
0.97985 1.22839 0.91645 0.93034 0.75701 1.88039 1.22036 1.82836
1.38878 1.22642 0.80252 0.99850 0.98938 1.22817 1.01792 1.02100
0.96495 1.22637 0.80811 1.00717 0.97717 1.88197 1.19749 1.75593
1.46108 1.60194 1.35135 1.32017 1.02780 1.21758 1.01291 0.94066
0.91444 1.19725 0.84432 0.88226 0.84025 1.90567 1.53711 1.15862
1.84389 1.42208 1.60201 1.11079 1.09619 1.19435 1.39947 0.98015
0.85824 0.86286 1.25040 0.97562 0.98405 0.95244 1.69623 1.45305
1.36492 1.00811 0.86665 0.78988 0.85199 0.78504 1.19672 1.20200
1.19489 0.91748 0.92848 0.92472 0.89920 0.90587 0.91515 0.90845
0.76500 0.87025 0.86656 0.91798 0.92744 0.88192 0.89638 0.89917
0.92679 0.88093 0.82718 0.89468 0.93729 0.79720 0.91661
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.41 9.41 37.16 0.35 -1.06 16
2 C 0.09 0.95 2.65 -67.71 -0.18 0.77 16
3 H 0.04 0.47 7.80 -51.93 -0.40 0.07 16
4 C -0.13 -1.15 4.92 -26.73 -0.13 -1.28 16
5 C 0.11 1.18 5.50 -4.04 -0.02 1.16 16
6 N -0.73 -6.42 5.56 -60.29 -0.33 -6.76 16
7 C 0.52 5.79 7.71 -10.99 -0.08 5.71 16
8 O -0.52 -8.33 15.42 -8.85 -0.14 -8.46 16
9 C -0.13 -1.06 5.78 -27.89 -0.16 -1.22 16
10 C 0.26 2.71 2.80 37.16 0.10 2.82 16
11 O -0.40 -3.75 10.54 -59.03 -0.62 -4.37 16
12 C 0.06 0.41 6.96 37.29 0.26 0.67 16
13 C -0.19 -1.31 6.35 -26.46 -0.17 -1.48 16
14 C 0.06 0.53 6.96 37.29 0.26 0.79 16
15 O -0.38 -4.68 9.77 -64.76 -0.63 -5.32 16
16 N -0.67 -10.31 5.93 -107.99 -0.64 -10.95 16
17 C 0.05 0.80 5.96 -4.98 -0.03 0.77 16
18 C 0.45 10.53 7.82 -10.98 -0.09 10.44 16
19 O -0.56 -15.58 15.78 5.55 0.09 -15.49 16
20 N -0.59 -14.48 5.09 -10.96 -0.06 -14.53 16
21 C -0.30 -8.79 10.16 -14.94 -0.15 -8.94 16
22 H 0.12 3.94 7.39 -52.49 -0.39 3.55 16
23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16
24 N -0.88 -26.25 13.96 55.50 0.77 -25.48 16
25 Si 0.88 19.77 27.74 -169.99 -4.71 15.06 16
26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16
27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16
28 H -0.27 -5.51 6.52 56.52 0.37 -5.15 16
29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16
31 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16
32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16
33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
35 H 0.07 0.98 6.43 -51.92 -0.33 0.65 16
36 H 0.40 2.17 8.47 -40.82 -0.35 1.83 16
37 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16
38 H 0.12 0.61 8.14 -51.92 -0.42 0.18 16
39 H 0.06 0.68 7.96 -51.93 -0.41 0.26 16
40 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16
41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16
42 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16
43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16
44 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16
45 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16
46 H 0.35 5.81 6.17 -39.29 -0.24 5.57 16
47 H 0.09 1.33 7.44 -51.93 -0.39 0.94 16
48 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16
49 H 0.37 7.95 5.76 -40.82 -0.24 7.71 16
50 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16
LS Contribution 406.08 15.07 6.12 6.12
Total: -1.00 -37.67 406.08 -8.51 -46.18
By element:
Atomic # 1 Polarization: 22.04 SS G_CDS: -8.22 Total: 13.82 kcal
Atomic # 6 Polarization: 10.32 SS G_CDS: -0.14 Total: 10.18 kcal
Atomic # 7 Polarization: -57.46 SS G_CDS: -0.26 Total: -57.72 kcal
Atomic # 8 Polarization: -32.34 SS G_CDS: -1.30 Total: -33.64 kcal
Atomic # 14 Polarization: 19.77 SS G_CDS: -4.71 Total: 15.06 kcal
Total LS contribution 6.12 Total: 6.12 kcal
Total: -37.67 -8.51 -46.18 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001266139903.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -121.679 kcal
(2) G-P(sol) polarization free energy of solvation -37.672 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.351 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.185 kcal
(6) G-S(sol) free energy of system = (1) + (5) -167.864 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.31 seconds