Wall clock time and date at job start Sat Apr 11 2020 07:02:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09003 * 109.47412 * 2 1
4 4 C 1.53000 * 109.47214 * 120.00230 * 2 1 3
5 5 C 1.53005 * 109.47064 * 185.00070 * 4 2 1
6 6 N 1.46501 * 109.47290 * 179.97438 * 5 4 2
7 7 C 1.34770 * 120.00013 * 179.97438 * 6 5 4
8 8 O 1.21281 * 119.99965 * 0.02562 * 7 6 5
9 9 C 1.50697 * 120.00148 * 180.02562 * 7 6 5
10 10 C 1.52995 * 109.47391 * 180.02562 * 9 7 6
11 11 O 1.42967 * 109.47161 * 175.00116 * 10 9 7
12 12 C 1.43095 * 113.77014 * 178.79211 * 11 10 9
13 13 C 1.53261 * 108.94358 * 302.02838 * 12 11 10
14 14 C 1.53259 * 108.84186 * 54.52606 * 13 12 11
15 15 O 1.42968 * 109.47265 * 294.99606 * 10 9 7
16 16 N 1.46910 * 109.47054 * 240.00152 * 2 1 3
17 17 C 1.46892 * 110.99941 * 84.99787 * 16 2 1
18 18 C 1.50701 * 109.47121 * 180.02562 * 17 16 2
19 19 O 1.21289 * 119.99857 * 0.02562 * 18 17 16
20 20 N 1.34781 * 120.00179 * 180.02562 * 18 17 16
21 21 C 1.37097 * 120.00013 * 179.97438 * 20 18 17
22 22 H 1.08002 * 120.00012 * 0.02562 * 21 20 18
23 23 C 1.38943 * 119.99660 * 179.97438 * 21 20 18
24 24 N 1.31415 * 119.99820 * 180.02562 * 23 21 20
25 25 Si 1.86800 * 120.00527 * 0.02562 * 23 21 20
26 26 H 1.48500 * 109.46986 * 89.99289 * 25 23 21
27 27 H 1.48499 * 109.47350 * 209.99617 * 25 23 21
28 28 H 1.48494 * 109.46845 * 329.99669 * 25 23 21
29 29 H 1.08999 * 109.46923 * 180.02562 * 1 2 3
30 30 H 1.09004 * 109.46898 * 299.99716 * 1 2 3
31 31 H 1.08996 * 109.47066 * 60.00131 * 1 2 3
32 32 H 1.08990 * 109.47545 * 65.00186 * 4 2 1
33 33 H 1.08999 * 109.47025 * 304.99384 * 4 2 1
34 34 H 1.09006 * 109.47165 * 59.99462 * 5 4 2
35 35 H 1.09008 * 109.47084 * 299.99960 * 5 4 2
36 36 H 0.96996 * 119.99559 * 0.02562 * 6 5 4
37 37 H 1.09006 * 109.47218 * 59.99878 * 9 7 6
38 38 H 1.09008 * 109.47128 * 300.00317 * 9 7 6
39 39 H 1.08998 * 109.47129 * 54.99933 * 10 9 7
40 40 H 1.08997 * 109.55621 * 61.86774 * 12 11 10
41 41 H 1.08999 * 109.55712 * 182.08124 * 12 11 10
42 42 H 1.08997 * 109.57207 * 174.33189 * 13 12 11
43 43 H 1.08998 * 109.57441 * 294.58821 * 13 12 11
44 44 H 1.08994 * 109.56239 * 65.31171 * 14 13 12
45 45 H 1.08999 * 109.55602 * 185.64189 * 14 13 12
46 46 H 1.00895 * 110.99437 * 208.95380 * 16 2 1
47 47 H 1.09002 * 109.47201 * 299.99877 * 17 16 2
48 48 H 1.09000 * 109.47200 * 60.00092 * 17 16 2
49 49 H 0.97004 * 119.99768 * 359.97438 * 20 18 17
50 50 H 0.96997 * 120.00653 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 3.5649 -0.6133 1.3136
6 7 4.0533 -1.3034 2.5101
7 6 5.3741 -1.3395 2.7752
8 8 6.1584 -0.8003 2.0236
9 6 5.8766 -2.0499 4.0056
10 6 7.4013 -1.9418 4.0701
11 8 7.8683 -2.5134 5.2945
12 6 9.2917 -2.4854 5.4382
13 6 9.9255 -3.2331 4.2601
14 6 9.4068 -2.6261 2.9519
15 8 7.9761 -2.6453 2.9662
16 7 2.0197 -0.6925 -1.1995
17 6 2.0824 0.2226 -2.3469
18 6 2.5872 -0.5218 -3.5561
19 8 2.8668 -1.6990 -3.4705
20 7 2.7281 0.1205 -4.7326
21 6 3.1879 -0.5566 -5.8325
22 1 3.4368 -1.6048 -5.7563
23 6 3.3326 0.1055 -7.0454
24 7 3.7728 -0.5436 -8.0999
25 14 2.9014 1.9182 -7.1775
26 1 4.1023 2.7363 -6.8710
27 1 2.4371 2.2175 -8.5559
28 1 1.8221 2.2419 -6.2103
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.7517 -1.7715 1.2056
33 1 1.6055 -0.2617 2.1369
34 1 3.8533 0.4370 1.3572
35 1 3.9995 -1.0728 0.4258
36 1 3.4259 -1.7350 3.1110
37 1 5.5879 -3.1001 3.9622
38 1 5.4422 -1.5902 4.8935
39 1 7.6934 -0.8927 4.0242
40 1 9.6376 -1.4518 5.4431
41 1 9.5736 -2.9689 6.3735
42 1 11.0099 -3.1325 4.3046
43 1 9.6543 -4.2877 4.3084
44 1 9.7571 -1.5979 2.8626
45 1 9.7711 -3.2121 2.1081
46 1 2.9173 -1.1205 -1.0288
47 1 1.0870 0.6162 -2.5525
48 1 2.7588 1.0462 -2.1183
49 1 2.5042 1.0618 -4.8011
50 1 3.8743 -0.0815 -8.9466
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001266139903.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 07:02:01
Heat of formation + Delta-G solvation = -199.793925 kcal
Electronic energy + Delta-G solvation = -29771.116713 eV
Core-core repulsion = 25410.920255 eV
Total energy + Delta-G solvation = -4360.196457 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 343.199 amu
Computer time = 4.69 seconds
Orbital eigenvalues (eV)
-41.31830 -40.48023 -40.25614 -38.41470 -36.72357 -36.10503 -35.70438 -34.25489
-33.78317 -32.73762 -31.43056 -29.58684 -28.21136 -26.96979 -25.80894 -25.09679
-23.61144 -22.17970 -21.77315 -21.34334 -21.03193 -20.28598 -18.78845 -17.97464
-17.79278 -17.68443 -17.19907 -16.96356 -16.85165 -16.71584 -16.48956 -15.96148
-15.80800 -15.75052 -15.53375 -15.04925 -14.75859 -14.60953 -14.37658 -14.33068
-14.30884 -13.96769 -13.88421 -13.39927 -13.16369 -13.10694 -12.91364 -12.57355
-12.46137 -12.43359 -12.24407 -12.18529 -12.13166 -12.10423 -11.97806 -11.73529
-11.53270 -11.06280 -10.95774 -10.71665 -10.45215 -10.26777 -10.13875 -9.32273
-8.42791 -6.03933 1.28626 1.34339 1.43323 1.59430 1.91158 1.93625
2.21755 2.62482 2.72366 2.75450 3.13279 3.39976 3.63636 3.74894
3.75165 3.81029 3.82780 3.95632 4.08990 4.14436 4.16766 4.22790
4.36839 4.40178 4.40492 4.47163 4.49746 4.53979 4.60648 4.67070
4.72057 4.79910 4.82151 4.98614 5.03525 5.06829 5.07485 5.21982
5.40624 5.49545 5.52462 5.80236 5.90192 6.09608 6.11662 6.38682
6.52111 6.58139 6.86142 7.23674 7.37582 7.94495 8.74989
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.011489 B = 0.001994 C = 0.001761
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2436.550069 B =14040.896403 C =15898.831800
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.083 3.917
3 H 0.057 0.943
4 C -0.118 4.118
5 C 0.116 3.884
6 N -0.713 5.713
7 C 0.512 3.488
8 O -0.580 6.580
9 C -0.120 4.120
10 C 0.259 3.741
11 O -0.404 6.404
12 C 0.050 3.950
13 C -0.186 4.186
14 C 0.045 3.955
15 O -0.409 6.409
16 N -0.685 5.685
17 C 0.061 3.939
18 C 0.446 3.554
19 O -0.615 6.615
20 N -0.591 5.591
21 C -0.330 4.330
22 H 0.053 0.947
23 C -0.017 4.017
24 N -0.934 5.934
25 Si 0.967 3.033
26 H -0.258 1.258
27 H -0.273 1.273
28 H -0.230 1.230
29 H 0.053 0.947
30 H 0.083 0.917
31 H 0.049 0.951
32 H 0.080 0.920
33 H 0.112 0.888
34 H 0.062 0.938
35 H 0.037 0.963
36 H 0.420 0.580
37 H 0.123 0.877
38 H 0.151 0.849
39 H 0.054 0.946
40 H 0.063 0.937
41 H 0.123 0.877
42 H 0.110 0.890
43 H 0.077 0.923
44 H 0.054 0.946
45 H 0.100 0.900
46 H 0.340 0.660
47 H 0.115 0.885
48 H 0.073 0.927
49 H 0.390 0.610
50 H 0.279 0.721
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.083 4.726 34.024 34.414
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.026 4.026
3 H 0.075 0.925
4 C -0.156 4.156
5 C -0.008 4.008
6 N -0.366 5.366
7 C 0.299 3.701
8 O -0.459 6.459
9 C -0.159 4.159
10 C 0.164 3.836
11 O -0.325 6.325
12 C -0.026 4.026
13 C -0.223 4.223
14 C -0.031 4.031
15 O -0.330 6.330
16 N -0.320 5.320
17 C -0.071 4.071
18 C 0.234 3.766
19 O -0.500 6.500
20 N -0.233 5.233
21 C -0.459 4.459
22 H 0.072 0.928
23 C -0.215 4.215
24 N -0.575 5.575
25 Si 0.786 3.214
26 H -0.182 1.182
27 H -0.198 1.198
28 H -0.153 1.153
29 H 0.072 0.928
30 H 0.102 0.898
31 H 0.068 0.932
32 H 0.098 0.902
33 H 0.130 0.870
34 H 0.081 0.919
35 H 0.055 0.945
36 H 0.258 0.742
37 H 0.141 0.859
38 H 0.169 0.831
39 H 0.071 0.929
40 H 0.081 0.919
41 H 0.141 0.859
42 H 0.128 0.872
43 H 0.095 0.905
44 H 0.073 0.927
45 H 0.118 0.882
46 H 0.161 0.839
47 H 0.133 0.867
48 H 0.091 0.909
49 H 0.225 0.775
50 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 2.015 3.897 33.169 33.458
hybrid contribution 1.122 0.958 -0.786 1.672
sum 3.137 4.855 32.384 32.895
Atomic orbital electron populations
1.21785 0.93091 1.02285 1.02255 1.21648 0.96962 0.96226 0.87801
0.92460 1.21901 0.91980 1.02948 0.98783 1.21349 0.95470 0.96857
0.87131 1.45750 1.07077 1.56865 1.26900 1.20748 0.82533 0.79655
0.87127 1.90750 1.56462 1.47532 1.51148 1.21489 0.92081 1.04637
0.97736 1.22910 0.92718 0.92389 0.75624 1.88013 1.23599 1.82745
1.38167 1.22923 0.79046 1.00750 0.99852 1.22765 1.03184 1.01403
0.94988 1.22833 0.79828 1.01033 0.99366 1.88155 1.21381 1.76055
1.47439 1.60251 1.34698 1.32816 1.04242 1.21684 1.02845 0.93819
0.88760 1.21058 0.82266 0.87963 0.85290 1.90541 1.55346 1.18656
1.85429 1.42036 1.60547 1.11818 1.08857 1.19007 1.42370 0.96069
0.88455 0.92839 1.26155 0.96399 1.05189 0.93799 1.69807 1.46266
1.39605 1.01795 0.85342 0.80199 0.76287 0.79551 1.18249 1.19786
1.15348 0.92818 0.89839 0.93195 0.90164 0.87009 0.91928 0.94470
0.74197 0.85910 0.83101 0.92853 0.91879 0.85913 0.87191 0.90457
0.92738 0.88165 0.83933 0.86717 0.90935 0.77457 0.91107
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.29 9.41 71.98 0.68 -1.62 16
2 C 0.08 1.61 2.65 44.91 0.12 1.72 16
3 H 0.06 1.00 7.80 -2.39 -0.02 0.98 16
4 C -0.12 -1.74 4.92 30.60 0.15 -1.59 16
5 C 0.12 2.33 5.50 86.38 0.48 2.81 16
6 N -0.71 -11.63 5.56 -463.04 -2.57 -14.20 16
7 C 0.51 11.35 7.71 87.66 0.68 12.02 16
8 O -0.58 -19.16 15.42 10.75 0.17 -19.00 16
9 C -0.12 -1.84 5.78 29.85 0.17 -1.66 16
10 C 0.26 5.30 2.80 71.98 0.20 5.50 16
11 O -0.40 -7.18 10.54 -126.22 -1.33 -8.51 16
12 C 0.05 0.61 6.96 72.07 0.50 1.11 16
13 C -0.19 -2.35 6.35 30.77 0.20 -2.16 16
14 C 0.05 0.87 6.96 72.07 0.50 1.37 16
15 O -0.41 -10.57 9.77 -120.75 -1.18 -11.75 16
16 N -0.69 -20.57 5.93 -495.57 -2.94 -23.51 16
17 C 0.06 1.97 5.96 85.56 0.51 2.48 16
18 C 0.45 21.16 7.82 87.66 0.69 21.85 16
19 O -0.62 -35.80 15.78 -3.06 -0.05 -35.85 16
20 N -0.59 -29.04 5.09 -306.98 -1.56 -30.60 16
21 C -0.33 -20.01 10.16 84.04 0.85 -19.16 16
22 H 0.05 3.86 7.39 -2.91 -0.02 3.84 16
23 C -0.02 -0.97 5.50 84.92 0.47 -0.50 16
24 N -0.93 -57.70 13.96 21.66 0.30 -57.40 16
25 Si 0.97 39.86 27.74 68.60 1.90 41.76 16
26 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16
27 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16
28 H -0.23 -7.99 6.52 99.48 0.65 -7.34 16
29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16
30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16
31 H 0.05 0.92 7.45 -2.39 -0.02 0.90 16
32 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16
33 H 0.11 0.91 8.14 -2.39 -0.02 0.90 16
34 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16
35 H 0.04 1.03 6.43 -2.38 -0.02 1.02 16
36 H 0.42 3.47 8.47 -92.71 -0.79 2.68 16
37 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16
38 H 0.15 1.17 8.14 -2.38 -0.02 1.15 16
39 H 0.05 1.17 7.96 -2.39 -0.02 1.15 16
40 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16
41 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16
42 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16
43 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16
44 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16
45 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16
46 H 0.34 11.50 6.17 -89.70 -0.55 10.95 16
47 H 0.11 3.10 7.44 -2.39 -0.02 3.08 16
48 H 0.07 1.96 8.06 -2.39 -0.02 1.94 16
49 H 0.39 15.84 5.76 -92.71 -0.53 15.30 16
50 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16
Total: -1.00 -90.90 406.08 -2.04 -92.94
By element:
Atomic # 1 Polarization: 44.90 SS G_CDS: -0.96 Total: 43.93 kcal
Atomic # 6 Polarization: 16.00 SS G_CDS: 6.19 Total: 22.19 kcal
Atomic # 7 Polarization: -118.94 SS G_CDS: -6.77 Total: -125.72 kcal
Atomic # 8 Polarization: -72.71 SS G_CDS: -2.39 Total: -75.10 kcal
Atomic # 14 Polarization: 39.86 SS G_CDS: 1.90 Total: 41.76 kcal
Total: -90.90 -2.04 -92.94 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001266139903.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -106.858 kcal
(2) G-P(sol) polarization free energy of solvation -90.898 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.756 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.038 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.936 kcal
(6) G-S(sol) free energy of system = (1) + (5) -199.794 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 4.69 seconds