Wall clock time and date at job start Sat Apr 11 2020 06:58:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42897 * 114.00355 * 2 1
4 4 C 1.52998 * 109.47411 * 179.97438 * 3 2 1
5 5 H 1.08999 * 109.46957 * 304.99509 * 4 3 2
6 6 O 1.42896 * 109.47278 * 64.99351 * 4 3 2
7 7 C 1.42900 * 114.00329 * 270.00165 * 6 4 3
8 8 C 1.50707 * 109.47253 * 184.99726 * 4 3 2
9 9 O 1.21279 * 119.99831 * 244.99787 * 8 4 3
10 10 N 1.34778 * 119.99738 * 64.99794 * 8 4 3
11 11 C 1.46497 * 120.00357 * 359.97438 * 10 8 4
12 12 C 1.46498 * 119.99706 * 180.02562 * 10 8 4
13 13 C 1.53005 * 109.47048 * 269.99717 * 12 10 8
14 14 H 1.08996 * 112.78568 * 284.19506 * 13 12 10
15 15 C 1.53507 * 113.47626 * 153.37935 * 13 12 10
16 16 C 1.53508 * 83.57465 * 219.20983 * 15 13 12
17 17 N 1.47472 * 87.93317 * 26.02798 * 16 15 13
18 18 C 1.46907 * 111.00139 * 221.29702 * 17 16 15
19 19 C 1.50699 * 109.46862 * 294.44391 * 18 17 16
20 20 O 1.21292 * 120.00186 * 353.81401 * 19 18 17
21 21 N 1.34777 * 119.99912 * 174.08025 * 19 18 17
22 22 C 1.37096 * 120.00183 * 179.72329 * 21 19 18
23 23 H 1.08001 * 119.99769 * 0.02562 * 22 21 19
24 24 C 1.38950 * 120.00161 * 180.02562 * 22 21 19
25 25 N 1.31402 * 119.99933 * 359.97438 * 24 22 21
26 26 Si 1.86800 * 119.99793 * 180.02562 * 24 22 21
27 27 H 1.48495 * 109.47315 * 89.99843 * 26 24 22
28 28 H 1.48508 * 109.47038 * 209.99689 * 26 24 22
29 29 H 1.48504 * 109.47415 * 329.99574 * 26 24 22
30 30 H 1.09000 * 109.47066 * 180.02562 * 1 2 3
31 31 H 1.08999 * 109.46884 * 300.00505 * 1 2 3
32 32 H 1.08999 * 109.46552 * 60.00564 * 1 2 3
33 33 H 1.09000 * 109.47521 * 59.99016 * 3 2 1
34 34 H 1.08998 * 109.46934 * 299.99571 * 3 2 1
35 35 H 1.08992 * 109.47307 * 180.02562 * 7 6 4
36 36 H 1.08999 * 109.47063 * 300.00273 * 7 6 4
37 37 H 1.09003 * 109.46953 * 59.99877 * 7 6 4
38 38 H 1.09005 * 109.47443 * 270.00488 * 11 10 8
39 39 H 1.09003 * 109.47278 * 30.00426 * 11 10 8
40 40 H 1.08996 * 109.47492 * 150.00079 * 11 10 8
41 41 H 1.09000 * 109.47116 * 149.99659 * 12 10 8
42 42 H 1.09000 * 109.47187 * 29.99529 * 12 10 8
43 43 H 1.09004 * 114.16748 * 105.56290 * 15 13 12
44 44 H 1.09000 * 114.34324 * 332.87122 * 15 13 12
45 45 H 1.09002 * 113.47805 * 271.25544 * 16 15 13
46 46 H 1.09006 * 113.47341 * 140.79236 * 16 15 13
47 47 H 1.08998 * 109.47047 * 174.44521 * 18 17 16
48 48 H 1.09003 * 109.46722 * 54.43929 * 18 17 16
49 49 H 0.97002 * 119.99933 * 359.73301 * 21 19 18
50 50 H 0.97003 * 120.00445 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5355 1.1846 0.0006
5 1 3.8508 0.5685 0.8428
6 8 3.9659 0.5790 -1.2200
7 6 4.0473 -0.8466 -1.1646
8 6 4.1481 2.5560 0.1244
9 8 4.8070 3.0102 -0.7868
10 7 3.9635 3.2775 1.2477
11 6 3.1670 2.7290 2.3481
12 6 4.5585 4.6108 1.3678
13 6 5.9560 4.4925 1.9794
14 1 5.9325 4.3056 3.0530
15 6 6.8980 5.6362 1.5781
16 6 7.9464 4.5172 1.5070
17 7 6.8439 3.5741 1.2425
18 6 7.0351 2.3196 1.9828
19 6 8.2593 1.6112 1.4629
20 8 8.8440 2.0437 0.4922
21 7 8.7015 0.4938 2.0732
22 6 9.8119 -0.1539 1.5969
23 1 10.3326 0.2314 0.7327
24 6 10.2674 -1.3061 2.2258
25 7 9.6342 -1.7747 3.2776
26 14 11.7808 -2.1882 1.5771
27 1 12.9930 -1.6451 2.2409
28 1 11.6682 -3.6409 1.8642
29 1 11.8845 -1.9801 0.1104
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5139 0.8899
32 1 -0.3632 0.5138 -0.8901
33 1 1.6886 1.8465 0.8899
34 1 1.6888 1.8463 -0.8900
35 1 4.3812 -1.2292 -2.1290
36 1 4.7578 -1.1402 -0.3919
37 1 3.0653 -1.2577 -0.9303
38 1 2.1219 3.0086 2.2148
39 1 3.2546 1.6425 2.3537
40 1 3.5319 3.1277 3.2947
41 1 3.9326 5.2316 2.0089
42 1 4.6315 5.0664 0.3803
43 1 7.0765 6.3655 2.3684
44 1 6.6662 6.0925 0.6158
45 1 8.4542 4.3369 2.4546
46 1 8.6378 4.6224 0.6709
47 1 6.1616 1.6817 1.8484
48 1 7.1651 2.5394 3.0425
49 1 8.2339 0.1479 2.8496
50 1 9.9523 -2.5788 3.7169
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001656092143.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:58:43
Heat of formation + Delta-G solvation = -97.508325 kcal
Electronic energy + Delta-G solvation = -32534.505839 eV
Core-core repulsion = 28178.744818 eV
Total energy + Delta-G solvation = -4355.761021 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 343.199 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.63624 -39.63556 -38.14840 -37.59939 -36.92315 -35.37307 -33.85929 -31.54568
-31.22662 -30.39372 -28.64314 -27.23794 -26.56440 -25.91740 -25.70218 -23.98685
-23.63796 -22.52618 -19.63465 -19.35657 -19.15933 -17.85290 -17.60015 -17.03315
-16.59296 -16.14550 -16.02323 -15.76571 -15.58601 -15.48153 -15.16647 -14.54578
-14.33153 -14.22036 -14.03114 -13.79202 -13.71129 -13.39020 -13.27347 -12.91563
-12.63642 -12.59308 -12.28833 -12.13967 -11.97437 -11.71588 -11.59990 -11.49994
-11.43622 -11.23799 -11.13787 -11.02804 -10.69863 -10.38899 -10.34427 -10.17143
-9.99915 -9.72975 -9.45331 -9.31042 -8.78902 -8.33219 -8.15788 -7.91132
-6.37718 -3.77847 2.69225 2.72661 3.20566 3.28709 3.35815 3.52334
3.88166 3.96256 4.13738 4.31506 4.59566 4.63668 4.66240 4.75832
4.88900 4.93670 5.01828 5.04392 5.07782 5.10323 5.11150 5.26168
5.28353 5.30195 5.36213 5.37379 5.50783 5.57365 5.58639 5.66421
5.72088 5.72692 5.84658 5.91934 5.95726 5.96602 6.21071 6.33067
6.40239 6.49470 6.78576 6.79803 7.09096 7.35860 7.45038 7.59345
8.10742 8.36942 8.66785 9.23057 9.58791 10.11813 10.80362
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.009260 B = 0.003879 C = 0.003020
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3023.144131 B = 7217.505569 C = 9270.303504
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.385 6.385
3 C 0.039 3.961
4 C 0.077 3.923
5 H 0.090 0.910
6 O -0.353 6.353
7 C 0.029 3.971
8 C 0.519 3.481
9 O -0.473 6.473
10 N -0.618 5.618
11 C 0.072 3.928
12 C 0.139 3.861
13 C 0.000 4.000
14 H 0.073 0.927
15 C -0.138 4.138
16 C 0.014 3.986
17 N -0.418 5.418
18 C 0.016 3.984
19 C 0.445 3.555
20 O -0.571 6.571
21 N -0.567 5.567
22 C -0.295 4.295
23 H 0.102 0.898
24 C 0.022 3.978
25 N -0.905 5.905
26 Si 0.928 3.072
27 H -0.279 1.279
28 H -0.284 1.284
29 H -0.269 1.269
30 H 0.087 0.913
31 H 0.041 0.959
32 H 0.042 0.958
33 H 0.068 0.932
34 H 0.062 0.938
35 H 0.086 0.914
36 H 0.044 0.956
37 H 0.056 0.944
38 H 0.056 0.944
39 H 0.071 0.929
40 H 0.074 0.926
41 H 0.077 0.923
42 H 0.090 0.910
43 H 0.071 0.929
44 H 0.093 0.907
45 H 0.061 0.939
46 H 0.091 0.909
47 H 0.079 0.921
48 H 0.048 0.952
49 H 0.390 0.610
50 H 0.270 0.730
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.372 8.760 2.475 22.314
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.304 6.304
3 C -0.038 4.038
4 C 0.015 3.985
5 H 0.108 0.892
6 O -0.270 6.270
7 C -0.067 4.067
8 C 0.303 3.697
9 O -0.342 6.342
10 N -0.355 5.355
11 C -0.071 4.071
12 C 0.017 3.983
13 C -0.111 4.111
14 H 0.091 0.909
15 C -0.176 4.176
16 C -0.115 4.115
17 N -0.140 5.140
18 C -0.116 4.116
19 C 0.230 3.770
20 O -0.454 6.454
21 N -0.205 5.205
22 C -0.425 4.425
23 H 0.120 0.880
24 C -0.179 4.179
25 N -0.547 5.547
26 Si 0.755 3.245
27 H -0.205 1.205
28 H -0.209 1.209
29 H -0.194 1.194
30 H 0.105 0.895
31 H 0.060 0.940
32 H 0.060 0.940
33 H 0.086 0.914
34 H 0.080 0.920
35 H 0.105 0.895
36 H 0.063 0.937
37 H 0.074 0.926
38 H 0.075 0.925
39 H 0.090 0.910
40 H 0.092 0.908
41 H 0.096 0.904
42 H 0.108 0.892
43 H 0.090 0.910
44 H 0.112 0.888
45 H 0.079 0.921
46 H 0.109 0.891
47 H 0.097 0.903
48 H 0.066 0.934
49 H 0.223 0.777
50 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -19.557 8.794 0.524 21.450
hybrid contribution 0.331 -0.877 1.667 1.913
sum -19.227 7.917 2.191 20.908
Atomic orbital electron populations
1.22760 0.80857 1.02882 0.99999 1.87893 1.19883 1.27167 1.95438
1.23226 0.92994 0.85749 1.01821 1.21888 0.91933 0.94112 0.90549
0.89203 1.88009 1.87728 1.20353 1.30880 1.22950 1.00863 0.80068
1.02822 1.19885 0.81310 0.85855 0.82628 1.90789 1.35920 1.69390
1.38105 1.47649 1.53359 1.18111 1.16361 1.21951 0.94989 0.99842
0.90348 1.21437 0.91656 0.82851 1.02395 1.23964 0.94839 0.95214
0.97132 0.90868 1.23189 0.96586 0.95715 1.02144 1.23529 0.95265
0.91235 1.01511 1.68980 1.05328 0.99136 1.40580 1.22426 0.98875
0.94566 0.95732 1.19700 0.87039 0.83662 0.86613 1.90544 1.59569
1.67241 1.28027 1.41861 1.26972 1.22887 1.28765 1.19696 1.03815
1.06079 1.12893 0.88010 1.25222 0.99402 0.97207 0.96099 1.69607
1.40798 1.23729 1.20518 0.85880 0.81026 0.78145 0.79401 1.20478
1.20938 1.19384 0.89470 0.94040 0.93982 0.91428 0.91969 0.89525
0.93708 0.92574 0.92548 0.91039 0.90763 0.90434 0.89154 0.91025
0.88833 0.92101 0.89081 0.90303 0.93425 0.77720 0.91994
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.23 11.01 101.05 1.11 1.34 16
2 O -0.38 -4.17 8.83 -40.09 -0.35 -4.53 16
3 C 0.04 0.42 5.34 37.16 0.20 0.62 16
4 C 0.08 1.10 2.10 -27.88 -0.06 1.04 16
5 H 0.09 1.21 6.78 -51.93 -0.35 0.86 16
6 O -0.35 -6.11 9.88 -59.70 -0.59 -6.70 16
7 C 0.03 0.42 10.71 101.05 1.08 1.51 16
8 C 0.52 8.16 6.11 -10.98 -0.07 8.09 16
9 O -0.47 -9.78 15.52 -14.30 -0.22 -10.00 16
10 N -0.62 -7.25 2.81 -181.57 -0.51 -7.76 16
11 C 0.07 0.55 8.92 59.85 0.53 1.09 16
12 C 0.14 1.55 5.58 -4.04 -0.02 1.53 16
13 C 0.00 0.00 3.37 -71.45 -0.24 -0.24 16
14 H 0.07 0.84 7.63 -51.93 -0.40 0.44 16
15 C -0.14 -1.69 8.00 -26.21 -0.21 -1.90 16
16 C 0.01 0.23 6.33 -7.56 -0.05 0.18 16
17 N -0.42 -7.56 4.78 -237.98 -1.14 -8.70 16
18 C 0.02 0.31 5.45 -4.97 -0.03 0.29 16
19 C 0.44 11.19 7.46 -10.99 -0.08 11.11 16
20 O -0.57 -16.55 14.98 5.55 0.08 -16.47 16
21 N -0.57 -14.97 5.29 -10.96 -0.06 -15.03 16
22 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16
23 H 0.10 3.10 7.16 -52.49 -0.38 2.73 16
24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16
25 N -0.90 -24.99 13.05 55.50 0.72 -24.26 16
26 Si 0.93 21.62 29.55 -169.99 -5.02 16.59 16
27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16
28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
29 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16
30 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16
31 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16
32 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16
33 H 0.07 0.55 5.06 -51.93 -0.26 0.29 16
34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16
36 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16
37 H 0.06 0.72 6.40 -51.93 -0.33 0.39 16
38 H 0.06 0.32 6.95 -51.93 -0.36 -0.05 16
39 H 0.07 0.56 6.11 -51.93 -0.32 0.25 16
40 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16
41 H 0.08 0.58 8.07 -51.93 -0.42 0.17 16
42 H 0.09 1.18 7.16 -51.93 -0.37 0.80 16
43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
44 H 0.09 1.15 7.94 -51.93 -0.41 0.74 16
45 H 0.06 1.02 7.84 -51.93 -0.41 0.61 16
46 H 0.09 1.77 7.97 -51.93 -0.41 1.35 16
47 H 0.08 1.47 7.66 -51.93 -0.40 1.08 16
48 H 0.05 0.82 7.56 -51.93 -0.39 0.42 16
49 H 0.39 9.80 7.90 -40.82 -0.32 9.48 16
50 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16
LS Contribution 403.06 15.07 6.07 6.07
Total: -1.00 -37.45 403.06 -7.13 -44.58
By element:
Atomic # 1 Polarization: 17.75 SS G_CDS: -8.04 Total: 9.70 kcal
Atomic # 6 Polarization: 14.57 SS G_CDS: 1.93 Total: 16.50 kcal
Atomic # 7 Polarization: -54.77 SS G_CDS: -0.98 Total: -55.75 kcal
Atomic # 8 Polarization: -36.61 SS G_CDS: -1.08 Total: -37.69 kcal
Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal
Total LS contribution 6.07 Total: 6.07 kcal
Total: -37.45 -7.13 -44.58 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001656092143.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -52.926 kcal
(2) G-P(sol) polarization free energy of solvation -37.455 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.381 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.582 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.508 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds