Wall clock time and date at job start Sat Apr 11 2020 06:58:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42897 * 114.00355 * 2 1
4 4 C 1.52998 * 109.47411 * 179.97438 * 3 2 1
5 5 H 1.08999 * 109.46957 * 304.99509 * 4 3 2
6 6 O 1.42896 * 109.47278 * 64.99351 * 4 3 2
7 7 C 1.42900 * 114.00329 * 270.00165 * 6 4 3
8 8 C 1.50707 * 109.47253 * 184.99726 * 4 3 2
9 9 O 1.21279 * 119.99831 * 244.99787 * 8 4 3
10 10 N 1.34778 * 119.99738 * 64.99794 * 8 4 3
11 11 C 1.46497 * 120.00357 * 359.97438 * 10 8 4
12 12 C 1.46498 * 119.99706 * 180.02562 * 10 8 4
13 13 C 1.53005 * 109.47048 * 269.99717 * 12 10 8
14 14 H 1.08996 * 112.78568 * 284.19506 * 13 12 10
15 15 C 1.53507 * 113.47626 * 153.37935 * 13 12 10
16 16 C 1.53508 * 83.57465 * 219.20983 * 15 13 12
17 17 N 1.47472 * 87.93317 * 26.02798 * 16 15 13
18 18 C 1.46907 * 111.00139 * 221.29702 * 17 16 15
19 19 C 1.50699 * 109.46862 * 294.44391 * 18 17 16
20 20 O 1.21292 * 120.00186 * 353.81401 * 19 18 17
21 21 N 1.34777 * 119.99912 * 174.08025 * 19 18 17
22 22 C 1.37096 * 120.00183 * 179.72329 * 21 19 18
23 23 H 1.08001 * 119.99769 * 0.02562 * 22 21 19
24 24 C 1.38950 * 120.00161 * 180.02562 * 22 21 19
25 25 N 1.31402 * 119.99933 * 359.97438 * 24 22 21
26 26 Si 1.86800 * 119.99793 * 180.02562 * 24 22 21
27 27 H 1.48495 * 109.47315 * 89.99843 * 26 24 22
28 28 H 1.48508 * 109.47038 * 209.99689 * 26 24 22
29 29 H 1.48504 * 109.47415 * 329.99574 * 26 24 22
30 30 H 1.09000 * 109.47066 * 180.02562 * 1 2 3
31 31 H 1.08999 * 109.46884 * 300.00505 * 1 2 3
32 32 H 1.08999 * 109.46552 * 60.00564 * 1 2 3
33 33 H 1.09000 * 109.47521 * 59.99016 * 3 2 1
34 34 H 1.08998 * 109.46934 * 299.99571 * 3 2 1
35 35 H 1.08992 * 109.47307 * 180.02562 * 7 6 4
36 36 H 1.08999 * 109.47063 * 300.00273 * 7 6 4
37 37 H 1.09003 * 109.46953 * 59.99877 * 7 6 4
38 38 H 1.09005 * 109.47443 * 270.00488 * 11 10 8
39 39 H 1.09003 * 109.47278 * 30.00426 * 11 10 8
40 40 H 1.08996 * 109.47492 * 150.00079 * 11 10 8
41 41 H 1.09000 * 109.47116 * 149.99659 * 12 10 8
42 42 H 1.09000 * 109.47187 * 29.99529 * 12 10 8
43 43 H 1.09004 * 114.16748 * 105.56290 * 15 13 12
44 44 H 1.09000 * 114.34324 * 332.87122 * 15 13 12
45 45 H 1.09002 * 113.47805 * 271.25544 * 16 15 13
46 46 H 1.09006 * 113.47341 * 140.79236 * 16 15 13
47 47 H 1.08998 * 109.47047 * 174.44521 * 18 17 16
48 48 H 1.09003 * 109.46722 * 54.43929 * 18 17 16
49 49 H 0.97002 * 119.99933 * 359.73301 * 21 19 18
50 50 H 0.97003 * 120.00445 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5355 1.1846 0.0006
5 1 3.8508 0.5685 0.8428
6 8 3.9659 0.5790 -1.2200
7 6 4.0473 -0.8466 -1.1646
8 6 4.1481 2.5560 0.1244
9 8 4.8070 3.0102 -0.7868
10 7 3.9635 3.2775 1.2477
11 6 3.1670 2.7290 2.3481
12 6 4.5585 4.6108 1.3678
13 6 5.9560 4.4925 1.9794
14 1 5.9325 4.3056 3.0530
15 6 6.8980 5.6362 1.5781
16 6 7.9464 4.5172 1.5070
17 7 6.8439 3.5741 1.2425
18 6 7.0351 2.3196 1.9828
19 6 8.2593 1.6112 1.4629
20 8 8.8440 2.0437 0.4922
21 7 8.7015 0.4938 2.0732
22 6 9.8119 -0.1539 1.5969
23 1 10.3326 0.2314 0.7327
24 6 10.2674 -1.3061 2.2258
25 7 9.6342 -1.7747 3.2776
26 14 11.7808 -2.1882 1.5771
27 1 12.9930 -1.6451 2.2409
28 1 11.6682 -3.6409 1.8642
29 1 11.8845 -1.9801 0.1104
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5139 0.8899
32 1 -0.3632 0.5138 -0.8901
33 1 1.6886 1.8465 0.8899
34 1 1.6888 1.8463 -0.8900
35 1 4.3812 -1.2292 -2.1290
36 1 4.7578 -1.1402 -0.3919
37 1 3.0653 -1.2577 -0.9303
38 1 2.1219 3.0086 2.2148
39 1 3.2546 1.6425 2.3537
40 1 3.5319 3.1277 3.2947
41 1 3.9326 5.2316 2.0089
42 1 4.6315 5.0664 0.3803
43 1 7.0765 6.3655 2.3684
44 1 6.6662 6.0925 0.6158
45 1 8.4542 4.3369 2.4546
46 1 8.6378 4.6224 0.6709
47 1 6.1616 1.6817 1.8484
48 1 7.1651 2.5394 3.0425
49 1 8.2339 0.1479 2.8496
50 1 9.9523 -2.5788 3.7169
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001656092143.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:58:42
Heat of formation + Delta-G solvation = -127.996500 kcal
Electronic energy + Delta-G solvation = -32535.827906 eV
Core-core repulsion = 28178.744818 eV
Total energy + Delta-G solvation = -4357.083087 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 343.199 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.80777 -40.87163 -39.61114 -38.99176 -37.96949 -36.45406 -35.98315 -33.38318
-32.56796 -31.77841 -29.58156 -28.06177 -27.58168 -27.41892 -26.83769 -25.36501
-24.98237 -23.56173 -21.18835 -20.68923 -20.37670 -19.95133 -18.62470 -18.04443
-17.76957 -17.57077 -17.15659 -16.81642 -16.79462 -16.60324 -16.43669 -16.22313
-15.78753 -15.61634 -15.45378 -15.10611 -14.89624 -14.67622 -14.15966 -14.07855
-13.88876 -13.72594 -13.58715 -13.50479 -13.04251 -12.98313 -12.91941 -12.82143
-12.55037 -12.47940 -12.40614 -12.31095 -12.18684 -12.16016 -11.90748 -11.59916
-11.47398 -10.96337 -10.69185 -10.45333 -10.38180 -10.05704 -9.78906 -9.39518
-8.50601 -5.99352 1.33741 1.37457 1.50580 1.59959 1.75673 1.99362
2.25897 2.69355 2.82493 2.98297 3.15059 3.29083 3.59326 3.66909
3.72612 3.85768 3.89055 4.14002 4.18890 4.22289 4.24821 4.34111
4.36584 4.38260 4.46610 4.48726 4.49370 4.54432 4.60175 4.60261
4.62284 4.72590 4.81136 4.86638 4.90300 4.96273 4.99107 5.01095
5.26770 5.36030 5.43037 5.67148 5.90693 5.98730 6.10597 6.16486
6.42397 6.56503 7.08849 7.28280 7.49863 8.07561 8.66940
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.009260 B = 0.003879 C = 0.003020
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3023.144131 B = 7217.505569 C = 9270.303504
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.406 6.406
3 C 0.052 3.948
4 C 0.071 3.929
5 H 0.094 0.906
6 O -0.390 6.390
7 C 0.032 3.968
8 C 0.513 3.487
9 O -0.539 6.539
10 N -0.608 5.608
11 C 0.060 3.940
12 C 0.138 3.862
13 C 0.008 3.992
14 H 0.102 0.898
15 C -0.112 4.112
16 C 0.001 3.999
17 N -0.455 5.455
18 C 0.035 3.965
19 C 0.437 3.563
20 O -0.618 6.618
21 N -0.572 5.572
22 C -0.335 4.335
23 H 0.072 0.928
24 C -0.008 4.008
25 N -0.917 5.917
26 Si 0.991 3.009
27 H -0.268 1.268
28 H -0.266 1.266
29 H -0.278 1.278
30 H 0.098 0.902
31 H 0.062 0.938
32 H 0.044 0.956
33 H 0.101 0.899
34 H 0.053 0.947
35 H 0.090 0.910
36 H 0.031 0.969
37 H 0.074 0.926
38 H 0.087 0.913
39 H 0.068 0.932
40 H 0.099 0.901
41 H 0.130 0.870
42 H 0.065 0.935
43 H 0.110 0.890
44 H 0.089 0.911
45 H 0.061 0.939
46 H 0.048 0.952
47 H 0.085 0.915
48 H 0.076 0.924
49 H 0.395 0.605
50 H 0.279 0.721
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.716 9.246 5.305 25.093
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.326 6.326
3 C -0.025 4.025
4 C 0.010 3.990
5 H 0.111 0.889
6 O -0.308 6.308
7 C -0.064 4.064
8 C 0.299 3.701
9 O -0.414 6.414
10 N -0.343 5.343
11 C -0.081 4.081
12 C 0.015 3.985
13 C -0.103 4.103
14 H 0.119 0.881
15 C -0.151 4.151
16 C -0.128 4.128
17 N -0.178 5.178
18 C -0.097 4.097
19 C 0.224 3.776
20 O -0.504 6.504
21 N -0.209 5.209
22 C -0.464 4.464
23 H 0.090 0.910
24 C -0.208 4.208
25 N -0.558 5.558
26 Si 0.814 3.186
27 H -0.194 1.194
28 H -0.190 1.190
29 H -0.203 1.203
30 H 0.116 0.884
31 H 0.080 0.920
32 H 0.063 0.937
33 H 0.118 0.882
34 H 0.071 0.929
35 H 0.108 0.892
36 H 0.050 0.950
37 H 0.092 0.908
38 H 0.105 0.895
39 H 0.087 0.913
40 H 0.118 0.882
41 H 0.147 0.853
42 H 0.084 0.916
43 H 0.128 0.872
44 H 0.107 0.893
45 H 0.079 0.921
46 H 0.067 0.933
47 H 0.103 0.897
48 H 0.094 0.906
49 H 0.229 0.771
50 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -21.962 9.276 3.442 24.088
hybrid contribution 1.016 -1.032 0.826 1.667
sum -20.946 8.244 4.268 22.911
Atomic orbital electron populations
1.22977 0.78866 1.04059 1.01166 1.87846 1.21993 1.27097 1.95637
1.23062 0.90414 0.86116 1.02887 1.22091 0.94319 0.93190 0.89438
0.88873 1.87953 1.88399 1.21534 1.32949 1.22978 1.01478 0.79267
1.02662 1.20268 0.80523 0.86367 0.82979 1.90758 1.39023 1.70944
1.40644 1.47722 1.52602 1.17942 1.16014 1.22312 0.96172 0.99863
0.89753 1.21591 0.91684 0.83008 1.02188 1.24102 0.94880 0.93123
0.98152 0.88072 1.23086 0.93525 0.95151 1.03289 1.23540 0.95609
0.93907 0.99722 1.69017 1.07113 0.99295 1.42407 1.22239 0.95517
0.95021 0.96923 1.20791 0.88093 0.83031 0.85667 1.90510 1.61453
1.68317 1.30091 1.41902 1.26684 1.23339 1.29021 1.19600 1.05600
1.07868 1.13382 0.90977 1.25982 1.01854 0.96997 0.95985 1.69653
1.41573 1.23980 1.20610 0.84973 0.77689 0.77694 0.78243 1.19356
1.19046 1.20275 0.88398 0.91956 0.93687 0.88176 0.92882 0.89164
0.95045 0.90793 0.89476 0.91304 0.88222 0.85253 0.91597 0.87202
0.89256 0.92095 0.93335 0.89727 0.90629 0.77108 0.91164
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.30 11.01 113.37 1.25 1.55 16
2 O -0.41 -8.13 8.83 -144.34 -1.27 -9.40 16
3 C 0.05 1.05 5.34 71.98 0.38 1.43 16
4 C 0.07 2.03 2.10 29.85 0.06 2.09 16
5 H 0.09 2.50 6.78 -2.39 -0.02 2.49 16
6 O -0.39 -14.13 9.88 -125.59 -1.24 -15.37 16
7 C 0.03 0.96 10.71 113.37 1.21 2.18 16
8 C 0.51 16.15 6.11 87.66 0.54 16.68 16
9 O -0.54 -23.38 15.52 15.96 0.25 -23.14 16
10 N -0.61 -12.80 2.81 -846.74 -2.38 -15.18 16
11 C 0.06 0.67 8.92 127.77 1.14 1.81 16
12 C 0.14 2.65 5.58 86.38 0.48 3.13 16
13 C 0.01 0.17 3.37 42.18 0.14 0.31 16
14 H 0.10 1.81 7.63 -2.39 -0.02 1.79 16
15 C -0.11 -2.54 8.00 30.94 0.25 -2.29 16
16 C 0.00 0.05 6.33 83.57 0.53 0.58 16
17 N -0.46 -16.54 4.78 -906.84 -4.33 -20.87 16
18 C 0.03 1.34 5.45 85.56 0.47 1.81 16
19 C 0.44 22.89 7.46 87.66 0.65 23.54 16
20 O -0.62 -38.12 14.98 -3.07 -0.05 -38.17 16
21 N -0.57 -31.19 5.29 -306.98 -1.62 -32.81 16
22 C -0.34 -20.04 9.68 84.04 0.81 -19.23 16
23 H 0.07 4.67 7.16 -2.91 -0.02 4.65 16
24 C -0.01 -0.45 5.50 84.93 0.47 0.02 16
25 N -0.92 -50.27 13.05 21.66 0.28 -49.99 16
26 Si 0.99 44.47 29.55 68.60 2.03 46.49 16
27 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16
28 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16
29 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16
30 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16
31 H 0.06 0.49 8.14 -2.39 -0.02 0.48 16
32 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16
33 H 0.10 1.29 5.06 -2.39 -0.01 1.27 16
34 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16
35 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16
36 H 0.03 0.99 8.08 -2.39 -0.02 0.97 16
37 H 0.07 1.90 6.40 -2.39 -0.02 1.89 16
38 H 0.09 0.49 6.95 -2.38 -0.02 0.47 16
39 H 0.07 0.85 6.11 -2.39 -0.01 0.83 16
40 H 0.10 0.68 8.07 -2.39 -0.02 0.66 16
41 H 0.13 1.21 8.07 -2.39 -0.02 1.19 16
42 H 0.07 1.64 7.16 -2.39 -0.02 1.63 16
43 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16
44 H 0.09 2.11 7.94 -2.39 -0.02 2.09 16
45 H 0.06 2.04 7.84 -2.39 -0.02 2.03 16
46 H 0.05 2.03 7.97 -2.38 -0.02 2.02 16
47 H 0.08 3.14 7.66 -2.39 -0.02 3.12 16
48 H 0.08 2.45 7.56 -2.39 -0.02 2.43 16
49 H 0.40 20.22 7.90 -92.71 -0.73 19.49 16
50 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16
Total: -1.00 -88.77 403.06 0.26 -88.51
By element:
Atomic # 1 Polarization: 36.09 SS G_CDS: 0.22 Total: 36.31 kcal
Atomic # 6 Polarization: 25.23 SS G_CDS: 8.39 Total: 33.62 kcal
Atomic # 7 Polarization: -110.79 SS G_CDS: -8.05 Total: -118.85 kcal
Atomic # 8 Polarization: -83.76 SS G_CDS: -2.31 Total: -86.07 kcal
Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal
Total: -88.77 0.26 -88.51 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001656092143.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.490 kcal
(2) G-P(sol) polarization free energy of solvation -88.772 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.261 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.265 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.507 kcal
(6) G-S(sol) free energy of system = (1) + (5) -127.997 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds