Wall clock time and date at job start Sat Apr 11 2020 06:59:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09003 * 109.47050 * 2 1
4 4 N 1.46902 * 109.47062 * 240.00336 * 2 1 3
5 5 C 1.46900 * 111.00018 * 85.00125 * 4 2 1
6 6 C 1.50702 * 109.47432 * 180.02562 * 5 4 2
7 7 O 1.21291 * 119.99577 * 359.97438 * 6 5 4
8 8 N 1.34769 * 120.00048 * 180.02562 * 6 5 4
9 9 C 1.37101 * 120.00058 * 179.97438 * 8 6 5
10 10 H 1.08002 * 119.99666 * 0.02562 * 9 8 6
11 11 C 1.38950 * 120.00203 * 179.97438 * 9 8 6
12 12 N 1.31409 * 120.00033 * 0.02562 * 11 9 8
13 13 Si 1.86802 * 119.99973 * 180.02562 * 11 9 8
14 14 H 1.48498 * 109.46951 * 89.99794 * 13 11 9
15 15 H 1.48496 * 109.47048 * 210.00147 * 13 11 9
16 16 H 1.48507 * 109.46959 * 330.00050 * 13 11 9
17 17 C 1.52995 * 109.47095 * 120.00354 * 2 1 3
18 18 H 1.09007 * 109.47080 * 184.99449 * 17 2 1
19 19 C 1.53000 * 109.47023 * 65.00125 * 17 2 1
20 20 N 1.46499 * 109.47455 * 305.00045 * 17 2 1
21 21 C 1.34777 * 120.00199 * 205.00257 * 20 17 2
22 22 O 1.21283 * 119.99750 * 359.97438 * 21 20 17
23 23 C 1.50702 * 119.99928 * 180.27479 * 21 20 17
24 24 C 1.52996 * 109.47159 * 179.72352 * 23 21 20
25 25 O 1.42970 * 109.46899 * 295.00180 * 24 23 21
26 26 C 1.43097 * 113.76701 * 181.20866 * 25 24 23
27 27 C 1.53259 * 108.94532 * 57.96615 * 26 25 24
28 28 C 1.53257 * 108.84172 * 305.47454 * 27 26 25
29 29 O 1.42960 * 109.47240 * 175.00030 * 24 23 21
30 30 H 1.09005 * 109.47027 * 59.99153 * 1 2 3
31 31 H 1.08994 * 109.47452 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.47135 * 299.99537 * 1 2 3
33 33 H 1.00893 * 111.00264 * 208.94969 * 4 2 1
34 34 H 1.09007 * 109.47063 * 300.00102 * 5 4 2
35 35 H 1.09005 * 109.47247 * 59.99711 * 5 4 2
36 36 H 0.96999 * 120.00488 * 359.97438 * 8 6 5
37 37 H 0.97003 * 120.00241 * 179.97438 * 12 11 9
38 38 H 1.09005 * 109.47473 * 179.97438 * 19 17 2
39 39 H 1.08998 * 109.46925 * 299.99562 * 19 17 2
40 40 H 1.08998 * 109.47598 * 59.99967 * 19 17 2
41 41 H 0.97000 * 119.99484 * 24.99354 * 20 17 2
42 42 H 1.09004 * 109.46965 * 299.72211 * 23 21 20
43 43 H 1.08994 * 109.46990 * 59.72065 * 23 21 20
44 44 H 1.09000 * 109.47017 * 54.99395 * 24 23 21
45 45 H 1.09000 * 109.55867 * 298.12281 * 26 25 24
46 46 H 1.09005 * 109.55314 * 177.80355 * 26 25 24
47 47 H 1.08994 * 109.57457 * 185.66822 * 27 26 25
48 48 H 1.09002 * 109.68210 * 65.34660 * 27 26 25
49 49 H 1.08999 * 109.56380 * 294.68159 * 28 27 26
50 50 H 1.09003 * 109.64659 * 174.41752 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0196 -0.6924 -1.1995
5 6 2.0824 0.2227 -2.3469
6 6 2.5873 -0.5216 -3.5561
7 8 2.8677 -1.6985 -3.4704
8 7 2.7282 0.1208 -4.7325
9 6 3.1880 -0.5562 -5.8325
10 1 3.4369 -1.6044 -5.7563
11 6 3.3328 0.1060 -7.0454
12 7 3.0295 1.3812 -7.1382
13 14 3.9585 -0.8167 -8.5443
14 1 2.8092 -1.3988 -9.2827
15 1 4.6934 0.1205 -9.4313
16 1 4.8706 -1.9053 -8.1103
17 6 2.0399 -0.7213 1.2492
18 1 3.1263 -0.6445 1.2950
19 6 1.6352 -2.1955 1.1877
20 7 1.4558 -0.1038 2.4424
21 6 2.0913 -0.1940 3.6275
22 8 3.1464 -0.7868 3.7062
23 6 1.4873 0.4359 4.8562
24 6 2.3985 0.1836 6.0590
25 8 2.4445 -1.2182 6.3363
26 6 3.2536 -1.5562 7.4671
27 6 2.7205 -0.8168 8.6991
28 6 2.6578 0.6825 8.3880
29 8 1.8865 0.8783 7.1987
30 1 -0.3633 0.5140 -0.8900
31 1 -0.3634 -1.0276 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 2.9172 -1.1204 -1.0289
34 1 1.0870 0.6165 -2.5525
35 1 2.7588 1.0464 -2.1182
36 1 2.5043 1.0621 -4.8010
37 1 3.1309 1.8436 -7.9849
38 1 1.9989 -2.7096 2.0775
39 1 0.5489 -2.2724 1.1419
40 1 2.0698 -2.6550 0.3000
41 1 0.6118 0.3700 2.3793
42 1 1.3814 1.5094 4.6994
43 1 0.5072 -0.0022 5.0446
44 1 3.4030 0.5428 5.8354
45 1 4.2850 -1.2574 7.2801
46 1 3.2090 -2.6316 7.6392
47 1 3.3877 -0.9869 9.5441
48 1 1.7225 -1.1813 8.9427
49 1 3.6667 1.0662 8.2360
50 1 2.1883 1.2098 9.2184
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001733966381.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:59:22
Heat of formation + Delta-G solvation = -167.777304 kcal
Electronic energy + Delta-G solvation = -30000.814144 eV
Core-core repulsion = 25642.006031 eV
Total energy + Delta-G solvation = -4358.808113 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 343.199 amu
Computer time = 4.79 seconds
Orbital eigenvalues (eV)
-40.63122 -39.78369 -38.43510 -37.30901 -36.02529 -34.44558 -33.77900 -33.62330
-31.53128 -31.15251 -30.05963 -29.02066 -26.56390 -26.39124 -24.90807 -24.24818
-23.13629 -21.59218 -20.65653 -19.77428 -19.30452 -18.15058 -17.90011 -17.23173
-16.99867 -16.39237 -16.27753 -15.82712 -15.53182 -15.33687 -15.15918 -14.99984
-14.85921 -14.42641 -14.00354 -13.78511 -13.70549 -13.68381 -13.31929 -13.18363
-12.87588 -12.68644 -12.24242 -12.16014 -12.01178 -11.95654 -11.79266 -11.58320
-11.53295 -11.52752 -11.41286 -11.08456 -10.89618 -10.67036 -10.42820 -10.38764
-10.21245 -10.08175 -9.99384 -9.50262 -9.22776 -8.45798 -8.10709 -7.95535
-6.41214 -3.81960 2.45954 2.63300 3.18656 3.26540 3.27225 3.33127
3.40578 3.91513 4.11139 4.26108 4.27865 4.32754 4.35764 4.50489
4.59095 4.65547 4.81942 4.86019 4.87829 4.94857 5.05845 5.15648
5.17267 5.25075 5.25818 5.28396 5.37598 5.45449 5.57540 5.59090
5.60772 5.76956 5.81836 5.95130 5.95919 5.99933 6.19104 6.28969
6.40487 6.41650 6.47206 6.77700 7.16640 7.30634 7.55878 7.61264
8.04142 8.06935 8.61765 9.18550 9.54856 10.06287 10.76507
Molecular weight = 343.20amu
Principal moments of inertia in cm(-1)
A = 0.032303 B = 0.001571 C = 0.001556
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 866.587300 B =17816.098506 C =17993.378165
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.076 3.924
3 H 0.047 0.953
4 N -0.656 5.656
5 C 0.051 3.949
6 C 0.441 3.559
7 O -0.582 6.582
8 N -0.564 5.564
9 C -0.299 4.299
10 H 0.103 0.897
11 C 0.022 3.978
12 N -0.902 5.902
13 Si 0.930 3.070
14 H -0.278 1.278
15 H -0.284 1.284
16 H -0.270 1.270
17 C 0.143 3.857
18 H 0.086 0.914
19 C -0.157 4.157
20 N -0.723 5.723
21 C 0.520 3.480
22 O -0.528 6.528
23 C -0.129 4.129
24 C 0.264 3.736
25 O -0.377 6.377
26 C 0.058 3.942
27 C -0.194 4.194
28 C 0.059 3.941
29 O -0.396 6.396
30 H 0.060 0.940
31 H 0.070 0.930
32 H 0.049 0.951
33 H 0.351 0.649
34 H 0.086 0.914
35 H 0.044 0.956
36 H 0.392 0.608
37 H 0.271 0.729
38 H 0.053 0.947
39 H 0.059 0.941
40 H 0.080 0.920
41 H 0.400 0.600
42 H 0.116 0.884
43 H 0.110 0.890
44 H 0.065 0.935
45 H 0.055 0.945
46 H 0.099 0.901
47 H 0.085 0.915
48 H 0.082 0.918
49 H 0.055 0.945
50 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.693 3.019 30.288 30.798
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.034 4.034
3 H 0.065 0.935
4 N -0.290 5.290
5 C -0.082 4.082
6 C 0.226 3.774
7 O -0.466 6.466
8 N -0.201 5.201
9 C -0.429 4.429
10 H 0.121 0.879
11 C -0.179 4.179
12 N -0.543 5.543
13 Si 0.757 3.243
14 H -0.204 1.204
15 H -0.210 1.210
16 H -0.194 1.194
17 C 0.038 3.962
18 H 0.104 0.896
19 C -0.215 4.215
20 N -0.377 5.377
21 C 0.305 3.695
22 O -0.403 6.403
23 C -0.169 4.169
24 C 0.169 3.831
25 O -0.297 6.297
26 C -0.018 4.018
27 C -0.232 4.232
28 C -0.017 4.017
29 O -0.317 6.317
30 H 0.079 0.921
31 H 0.089 0.911
32 H 0.068 0.932
33 H 0.172 0.828
34 H 0.105 0.895
35 H 0.062 0.938
36 H 0.225 0.775
37 H 0.081 0.919
38 H 0.072 0.928
39 H 0.078 0.922
40 H 0.099 0.901
41 H 0.236 0.764
42 H 0.134 0.866
43 H 0.129 0.871
44 H 0.083 0.917
45 H 0.073 0.927
46 H 0.117 0.883
47 H 0.103 0.897
48 H 0.100 0.900
49 H 0.073 0.927
50 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges -4.581 1.646 29.923 30.317
hybrid contribution 0.804 1.102 -0.429 1.430
sum -3.777 2.748 29.494 29.862
Atomic orbital electron populations
1.21883 0.94457 1.02958 1.00892 1.21722 0.96551 0.95876 0.89294
0.93510 1.60189 1.34955 1.31698 1.02205 1.21735 1.01323 0.93879
0.91255 1.19785 0.84951 0.88202 0.84419 1.90528 1.55237 1.16114
1.84732 1.41856 1.57798 1.12407 1.07989 1.19712 1.39930 0.96449
0.86806 0.87902 1.25257 0.97668 0.95770 0.99230 1.69611 1.48749
1.08840 1.27144 0.85855 0.78876 0.78947 0.80593 1.20395 1.20961
1.19426 1.21068 0.98625 0.93474 0.83021 0.89581 1.22119 1.02045
0.94629 1.02740 1.46114 1.26065 1.57390 1.08144 1.20147 0.84997
0.80167 0.84164 1.90746 1.22471 1.41846 1.85279 1.21464 1.01092
1.03572 0.90783 1.22845 0.96257 0.78787 0.85247 1.88180 1.69941
1.23725 1.47898 1.22622 0.93860 1.00712 0.84648 1.22813 1.03736
0.97019 0.99611 1.22642 0.96074 0.95421 0.87587 1.88048 1.54532
1.70118 1.19023 0.92070 0.91141 0.93208 0.82819 0.89540 0.93838
0.77486 0.91897 0.92762 0.92174 0.90071 0.76417 0.86615 0.87126
0.91736 0.92693 0.88268 0.89671 0.89972 0.92706 0.88182
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.45 8.93 37.16 0.33 -1.12 16
2 C 0.08 0.89 2.66 -67.72 -0.18 0.71 16
3 H 0.05 0.53 7.80 -51.93 -0.40 0.12 16
4 N -0.66 -10.15 5.14 -107.99 -0.55 -10.70 16
5 C 0.05 0.87 5.96 -4.97 -0.03 0.84 16
6 C 0.44 10.33 7.82 -10.99 -0.09 10.25 16
7 O -0.58 -15.73 15.78 5.55 0.09 -15.65 16
8 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16
9 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16
10 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16
11 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16
12 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16
13 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16
14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16
15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
17 C 0.14 1.63 2.30 -67.93 -0.16 1.47 16
18 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16
19 C -0.16 -1.92 9.02 37.16 0.33 -1.58 16
20 N -0.72 -6.66 4.99 -53.81 -0.27 -6.92 16
21 C 0.52 5.60 7.67 -10.98 -0.08 5.52 16
22 O -0.53 -7.83 15.08 -8.86 -0.13 -7.97 16
23 C -0.13 -1.03 5.78 -27.88 -0.16 -1.19 16
24 C 0.26 2.56 2.80 37.16 0.10 2.66 16
25 O -0.38 -4.22 9.77 -64.76 -0.63 -4.86 16
26 C 0.06 0.46 6.96 37.29 0.26 0.72 16
27 C -0.19 -1.13 6.35 -26.46 -0.17 -1.30 16
28 C 0.06 0.37 6.96 37.29 0.26 0.63 16
29 O -0.40 -3.57 10.54 -59.03 -0.62 -4.19 16
30 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16
31 H 0.07 0.77 6.57 -51.93 -0.34 0.43 16
32 H 0.05 0.36 6.29 -51.93 -0.33 0.03 16
33 H 0.35 5.77 7.62 -39.30 -0.30 5.47 16
34 H 0.09 1.37 7.44 -51.93 -0.39 0.98 16
35 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16
36 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16
37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16
38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
39 H 0.06 0.68 6.57 -51.93 -0.34 0.34 16
40 H 0.08 1.11 7.17 -51.93 -0.37 0.73 16
41 H 0.40 2.61 6.58 -40.82 -0.27 2.35 16
42 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16
43 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16
44 H 0.07 0.65 7.96 -51.93 -0.41 0.24 16
45 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
46 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16
47 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16
48 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16
49 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16
50 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16
LS Contribution 402.61 15.07 6.07 6.07
Total: -1.00 -34.52 402.61 -8.22 -42.74
By element:
Atomic # 1 Polarization: 21.88 SS G_CDS: -7.99 Total: 13.89 kcal
Atomic # 6 Polarization: 9.41 SS G_CDS: 0.18 Total: 9.60 kcal
Atomic # 7 Polarization: -55.56 SS G_CDS: -0.16 Total: -55.72 kcal
Atomic # 8 Polarization: -31.36 SS G_CDS: -1.30 Total: -32.66 kcal
Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal
Total LS contribution 6.07 Total: 6.07 kcal
Total: -34.52 -8.22 -42.74 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733966381.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -125.033 kcal
(2) G-P(sol) polarization free energy of solvation -34.524 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.557 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.744 kcal
(6) G-S(sol) free energy of system = (1) + (5) -167.777 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 4.79 seconds